<tool id="CreateMatrix" name="CreateMatrix" version="1.00">
<description>Create Genotyping Matrix</description>
<command interpreter="perl">
	CreateMatrix.pl -input_name $input_name -input_pileup_file $input_pileup_file -input_variant_unique_file $input_variant_unique_file > $output_file 
</command>
<inputs>
	<param name="input_name" size="30" type="text" label="Genotype name"/>
	<param name="input_pileup_file"  type="data" format="pileup" label="Select suitable PILEUP files from your history"/>
	<param name="input_variant_unique_file"  type="data" format="pileup" label="Select suitable VARIANT UNIQUE files from your history"/>
	
</inputs>
<outputs>
	<data name="output_file" format="txt" label="MATRIX on ${on_string}" />
</outputs>

<help>



</help>
</tool>