Mercurial > repos > md-anderson-bioinformatics > heat_map_creation_advanced
comparison mda_advanced_heatmap_gen.xml @ 4:d747292c486f draft
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author | insilico-bob |
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date | Tue, 06 Nov 2018 16:30:12 -0500 |
parents | 9359e0a0d40b |
children | 15c71ed09efa |
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3:9359e0a0d40b | 4:d747292c486f |
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1 <?xml version="1.0" encoding="UTF-8" ?> | 1 <?xml version="1.0" encoding="UTF-8" ?> |
2 <tool id="mda_advanced_heatmap_gen" name="Advanced NG-CHM Generator" version="2.5.3"> | 2 <tool id="mda_advanced_heatmap_gen" name="Advanced NG-CHM Generator" version="2.3"> |
3 <requirements> | 3 <requirements> |
4 <requirement type="package" version="3.4.1">r-base</requirement> | 4 <requirement type="package" version="3.4.1">r-base</requirement> |
5 <requirement type="package" version="1.8">java</requirement> | 5 <requirement type="package" version="8.0.144">openjdk</requirement> |
6 </requirements> | 6 </requirements> |
7 <description> Create Clustered Heat Maps with Advanced Options</description> | 7 <description> Create Clustered Heat Maps with Advanced Options</description> |
8 <command interpreter="bash" detect_errors="aggressive">$__tool_directory__/heatmap_advanced.sh 'advanced' 'Heat_Map_$hmname' '$hmdesc' '$inputmatrix' ${d_rows.rowOrderMethod} ${d_rows.rowDistanceMeasure} ${d_rows.rowAgglomerationMethod} ${d_cols.columnOrderMethod} ${d_cols.columnDistanceMeasure} ${d_cols.columnAgglomerationMethod} $summarymethod '$__tool_directory__;$__tool_data_path__' ${d_rows.rowDendroCut} ${d_cols.colDendroCut} $rowDataType $colDataType 'c_${d_rows.rcutrows.rowDendroTreeCut}' 'c_${d_cols.ccutrows.colDendroTreeCut}' 't_$rowTopItems' 't_$colTopItems' | 8 <command interpreter="bash" detect_errors="aggressive">$__tool_directory__/heatmap_advanced.sh 'advanced' 'Heat_Map_$hmname' '$hmdesc' '$inputmatrix' ${d_rows.rowOrderMethod} ${d_rows.rowDistanceMeasure} ${d_rows.rowAgglomerationMethod} ${d_cols.columnOrderMethod} ${d_cols.columnDistanceMeasure} ${d_cols.columnAgglomerationMethod} $summarymethod '$__tool_directory__;$__tool_data_path__' ${d_rows.rowDendroCut} ${d_cols.colDendroCut} $rowDataType $colDataType 'c_${d_rows.rcutrows.rowDendroTreeCut}' 'c_${d_cols.ccutrows.colDendroTreeCut}' 't_$rowTopItems' 't_$colTopItems' |
9 | 9 |
10 " | 10 " |
11 #for $attr in $hm_attribute | 11 #for $attr in $hm_attribute |
12 '${attr.attrbute_key}':'${attr.attrbute_value}'; | 12 '${attr.attrbute_key}':'${attr.attrbute_value}'; |
13 #end for | 13 #end for |