Mercurial > repos > md-anderson-bioinformatics > heat_map_creation_advanced

changeset 4:d747292c486f draft

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Uploaded
author insilico-bob
date Tue, 06 Nov 2018 16:30:12 -0500
parents 9359e0a0d40b
children 15c71ed09efa
files mda_advanced_heatmap_gen.xml
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/mda_advanced_heatmap_gen.xml	Mon Nov 05 11:23:57 2018 -0500
+++ b/mda_advanced_heatmap_gen.xml	Tue Nov 06 16:30:12 2018 -0500
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8" ?>
-<tool id="mda_advanced_heatmap_gen" name="Advanced NG-CHM Generator" version="2.5.3">
+<tool id="mda_advanced_heatmap_gen" name="Advanced NG-CHM Generator" version="2.3">
   <requirements>
-    <requirement type="package" version="3.4.1">r-base</requirement> 
-	 <requirement type="package" version="1.8">java</requirement>
+       <requirement type="package" version="3.4.1">r-base</requirement> 
+	   <requirement type="package" version="8.0.144">openjdk</requirement>
   </requirements>
   <description> Create Clustered Heat Maps with Advanced Options</description>
-  <command interpreter="bash" detect_errors="aggressive">$__tool_directory__/heatmap_advanced.sh  'advanced' 'Heat_Map_$hmname' '$hmdesc' '$inputmatrix' ${d_rows.rowOrderMethod} ${d_rows.rowDistanceMeasure} ${d_rows.rowAgglomerationMethod} ${d_cols.columnOrderMethod} ${d_cols.columnDistanceMeasure} ${d_cols.columnAgglomerationMethod} $summarymethod '$__tool_directory__;$__tool_data_path__' ${d_rows.rowDendroCut} ${d_cols.colDendroCut} $rowDataType $colDataType 'c_${d_rows.rcutrows.rowDendroTreeCut}' 'c_${d_cols.ccutrows.colDendroTreeCut}' 't_$rowTopItems' 't_$colTopItems' 
+<command interpreter="bash" detect_errors="aggressive">$__tool_directory__/heatmap_advanced.sh  'advanced' 'Heat_Map_$hmname' '$hmdesc' '$inputmatrix' ${d_rows.rowOrderMethod} ${d_rows.rowDistanceMeasure} ${d_rows.rowAgglomerationMethod} ${d_cols.columnOrderMethod} ${d_cols.columnDistanceMeasure} ${d_cols.columnAgglomerationMethod} $summarymethod '$__tool_directory__;$__tool_data_path__' ${d_rows.rowDendroCut} ${d_cols.colDendroCut} $rowDataType $colDataType 'c_${d_rows.rcutrows.rowDendroTreeCut}' 'c_${d_cols.ccutrows.colDendroTreeCut}' 't_$rowTopItems' 't_$colTopItems' 
 
     "
     #for $attr in $hm_attribute