annotate test-data/output2.txt @ 0:716cdcccc919 draft default tip

planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
author megan-shortridge
date Tue, 15 Sep 2015 14:14:41 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
1 The total number of sequences that were analyzed was 166.
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
2
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
3 Adapter was found and removed for 28 sequences (16% of total).
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
4
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
5 Sequences that did not contain the adapter were kept.
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
6
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
7 The adapters were removed from the dataset.
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
8
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
9 Adapters were removed from the 3'end.
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
10
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
11 The name of the adapter that was removed was named UniB, and had the sequence GCTCGGTGGCGT.
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
12