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comparison CorrTable/README.md @ 1:29ec7e3afdd4 draft

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author melpetera
date Thu, 01 Aug 2019 11:30:58 -0400
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1 Between-table Correlation
2 =======
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4 Metadata
5 -----------
6
7 * **@name**: Between-table Correlation
8 * **@version**: 1.0.0
9 * **@authors**: Original code: Ophelie Barbet (PFEM - INRA) - Maintainer: Melanie Petera (PFEM - INRA - MetaboHUB)
10 * **@init date**: 2018, May
11 * **@main usage**: This tool builds a correlation table from two seperate tables, with filtering options and graphical outputs.
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14 Context
15 -----------
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17 This tool is provided as one of the [Workflow4Metabolomics](http://workflow4metabolomics.org) Galaxy instance statistical tools.
18 W4M is a French infrastructure providing software tools to process, analyse and annotate metabolomics data.
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20 User interface is based on the Galaxy platform (homepage: https://galaxyproject.org/). It is an open, web-based platform for data intensive biomedical research.
21 Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.
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24 Configuration
25 -----------
26
27 ### Requirement:
28 * R software: version > 3.0.0 recommended
29 * Specific R libraries: 'batch', 'ggplot2' and 'reshape2'
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32 Technical description
33 -----------
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35 Main files:
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37 - Corr_Script_samples_row.R: R function (core script)
38 - Corr_wrap.R: R script to link the main R function to inputs
39 - Corr.xml: XML wrapper (interface for Galaxy)
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42 Services provided
43 -----------
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45 * Help and support: support@workflow4metabolomics.org