Mercurial > repos > melpetera > generic_filter
comparison GalFilter/README.md @ 3:cfd7c4aa5c26 draft default tip
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| author | melpetera |
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| date | Fri, 03 Jan 2020 04:09:28 -0500 |
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| 1 Generic Filter | |
| 2 ======= | |
| 3 | |
| 4 Metadata | |
| 5 ----------- | |
| 6 | |
| 7 * **@name**: Generic Filter | |
| 8 * **@version**: 2020.01 | |
| 9 * **@authors**: Marion Landi and Melanie Petera for first version - Maintainer: Melanie Petera (PFEM ; INRAE ; MetaboHUB) | |
| 10 * **@init date**: 2014, december | |
| 11 * **@main usage**: This tool allows to remove all samples and/or variables corresponding to specific values regarding designated factors or numerical variables. | |
| 12 | |
| 13 | |
| 14 Context | |
| 15 ----------- | |
| 16 | |
| 17 This tool is provided as one of the [Workflow4Metabolomics](http://workflow4metabolomics.org) Galaxy instance utilities. W4M is a French infrastructure providing software tools to process, analyse and annotate metabolomics data. | |
| 18 | |
| 19 User interface is based on the Galaxy platform (homepage: https://galaxyproject.org/). It is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses. | |
| 20 | |
| 21 | |
| 22 Configuration | |
| 23 ----------- | |
| 24 | |
| 25 ### Requirement: | |
| 26 * R software: version > 3.0.0 recommended | |
| 27 * Specific R library: 'batch' | |
| 28 | |
| 29 ### Docker: | |
| 30 * Use of this tool in a docker context: | |
| 31 Information is provided in the [about_docker.md file](about_docker.md). | |
| 32 | |
| 33 | |
| 34 Technical description | |
| 35 ----------- | |
| 36 | |
| 37 Main files: | |
| 38 | |
| 39 - filter_script.R: R function (core script) | |
| 40 - filter_wrap.R: R script to link the main R function to inputs | |
| 41 - generic_filter.xml: XML wrapper (interface for Galaxy) | |
| 42 | |
| 43 | |
| 44 Services provided | |
| 45 ----------- | |
| 46 | |
| 47 * Help and support: support@workflow4metabolomics.org | |
| 48 | |
| 49 | |
| 50 License | |
| 51 ----------- | |
| 52 | |
| 53 * Cea Cnrs Inria Logiciel Libre License, version 2.1 (CECILL-2.1) |