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1 ID choice
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2 =======
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3
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4 Metadata
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5 -----------
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6
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7 * **@name**: ID choice
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8 * **@version**: 17.11
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9 * **@authors**: Melanie Petera - PFEM ; INRA ; MetaboHUB
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10 * **@init date**: 2017/06/07
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11 * **@main usage**: This tool is designed to make you choose a particular column in your metadata file to be considered as identifiers for your W4M-3-tables-format data.
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12
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13
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14 Context
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15 -----------
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16
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17 This tool is one of the [Workflow4Metabolomics](http://workflow4metabolomics.org) Galaxy instance utilities. W4M is a French infrastructure providing software tools to process, analyse and annotate metabolomics data.
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18
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19 User interface is based on the Galaxy platform (homepage: https://galaxyproject.org/). It is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.
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20
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21
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22 Configuration
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23 -----------
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24
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25 ### Requirement:
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26 * R software: version > 3.0.0 recommended
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27 * Specific R library: 'batch'
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28 * Submodule: [easyRlibrary](https://github.com/workflow4metabolomics/easyrlibrary-lib) (Required for internal input quality checks)
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29
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30 ### Deploy:
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31 * [get project data](https://github.com/workflow4metabolomics/idchoice)
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32 * How to get the submodule files:
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33 When pulling this module's Git repository, you may only obtain an empty folder for the needed submodule.
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34 You can initialise it then with the following command:
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35 ```bash
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36 git submodule update --init --recursive
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37 ```
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38
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39
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40 Travis test
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41 -----------
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42
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43 [](https://travis-ci.org/workflow4metabolomics/idchoice)
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44 Test and Deploy with Confidence. Easily sync your GitHub projects with Travis CI and you'll be testing your code in minutes!
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45
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46
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47 Technical description
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48 -----------
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49
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50 Main files:
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51
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52 - IDchoice_script.R: R function (core script)
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53 - IDchoice_wrap.R: R script to link the main R function to inputs
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54 - IDchoice.xml: XML wrapper (interface for Galaxy)
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55
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56
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57 Services provided
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58 -----------
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59
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60 * Help and support: support@workflow4metabolomics.org
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