Mercurial > repos > metaboflow_cam > ionflow

diff ionflow/macros.xml @ 0:3b461dc9568b draft default tip

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author metaboflow_cam
date Mon, 09 Aug 2021 09:41:22 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ionflow/macros.xml	Mon Aug 09 09:41:22 2021 +0000
@@ -0,0 +1,44 @@
+<macros>
+  <xml name="requirements">
+    <requirements>
+      <requirement type="package" version="1.6.6">r-optparse</requirement>
+      <requirement type="package" version="1.4.4">r-reshape2</requirement>
+      <requirement type="package" version="1.8.6">r-plyr</requirement>
+      <requirement type="package" version="1.0.6">r-dplyr</requirement>
+      <requirement type="package" version="1.1.3">r-tidyr</requirement>
+      <requirement type="package" version="3.3.3">r-ggplot2</requirement>
+      <requirement type="package" version="0.9.1">r-ggrepel</requirement>
+      <requirement type="package" version="0.89">r-corrplot</requirement>
+      <requirement type="package" version="3.1.1">r-gplots</requirement>
+      <requirement type="package" version="1.16.1">r-network</requirement>
+      <requirement type="package" version="2.6">r-sna</requirement>
+      <requirement type="package" version="2.1.1">r-ggally</requirement>
+      <requirement type="package" version="3.13.0">bioconductor-go.db</requirement>
+      <requirement type="package" version="2.58.0">bioconductor-gostats</requirement>
+      <requirement type="package" version="1.0.12">r-pheatmap</requirement>
+      <requirement type="package" version="1.2.6">r-igraph</requirement>
+      <requirement type="package" version="3.2.4">bioconductor-kegg.db</requirement>
+      <requirement type="package" version="3.13.0">bioconductor-org.sc.sgd.db</requirement>
+      <requirement type="package" version="3.13.0">bioconductor-org.hs.eg.db</requirement>
+    </requirements>
+  </xml>
+  <xml name="stdio">
+    <stdio>
+      <regex match="Execution halted"
+            source="both"
+            level="fatal"
+            description="Execution halted." />
+      <regex match="Error in"
+            source="both"
+            level="fatal"
+            description="An undefined error occurred, please check your input
+                          carefully and contact your administrator." />
+      <regex match="Fatal error"
+            source="both"
+            level="fatal"
+            description="An undefined error occurred, please check your input
+                          carefully and contact your administrator." />
+    </stdio>
+  </xml>
+
+</macros>