view ionflow/macros.xml @ 0:3b461dc9568b draft default tip

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author metaboflow_cam
date Mon, 09 Aug 2021 09:41:22 +0000
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<macros>
  <xml name="requirements">
    <requirements>
      <requirement type="package" version="1.6.6">r-optparse</requirement>
      <requirement type="package" version="1.4.4">r-reshape2</requirement>
      <requirement type="package" version="1.8.6">r-plyr</requirement>
      <requirement type="package" version="1.0.6">r-dplyr</requirement>
      <requirement type="package" version="1.1.3">r-tidyr</requirement>
      <requirement type="package" version="3.3.3">r-ggplot2</requirement>
      <requirement type="package" version="0.9.1">r-ggrepel</requirement>
      <requirement type="package" version="0.89">r-corrplot</requirement>
      <requirement type="package" version="3.1.1">r-gplots</requirement>
      <requirement type="package" version="1.16.1">r-network</requirement>
      <requirement type="package" version="2.6">r-sna</requirement>
      <requirement type="package" version="2.1.1">r-ggally</requirement>
      <requirement type="package" version="3.13.0">bioconductor-go.db</requirement>
      <requirement type="package" version="2.58.0">bioconductor-gostats</requirement>
      <requirement type="package" version="1.0.12">r-pheatmap</requirement>
      <requirement type="package" version="1.2.6">r-igraph</requirement>
      <requirement type="package" version="3.2.4">bioconductor-kegg.db</requirement>
      <requirement type="package" version="3.13.0">bioconductor-org.sc.sgd.db</requirement>
      <requirement type="package" version="3.13.0">bioconductor-org.hs.eg.db</requirement>
    </requirements>
  </xml>
  <xml name="stdio">
    <stdio>
      <regex match="Execution halted"
            source="both"
            level="fatal"
            description="Execution halted." />
      <regex match="Error in"
            source="both"
            level="fatal"
            description="An undefined error occurred, please check your input
                          carefully and contact your administrator." />
      <regex match="Fatal error"
            source="both"
            level="fatal"
            description="An undefined error occurred, please check your input
                          carefully and contact your administrator." />
    </stdio>
  </xml>

</macros>