Mercurial > repos > metaboflow_cam > isolab
changeset 2:678d1e95d448 draft
Deleted selected files
| author | metaboflow_cam |
|---|---|
| date | Tue, 24 Sep 2019 04:59:56 -0400 |
| parents | 1f2508f5423a |
| children | 63b35931859a |
| files | isolab |
| diffstat | 1 files changed, 0 insertions(+), 1131 deletions(-) [+] |
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<div class="d-lg-flex "> - <div class="header-search mr-3 scoped-search site-scoped-search js-site-search position-relative js-jump-to" - role="combobox" - aria-owns="jump-to-results" - aria-label="Search or jump to" - aria-haspopup="listbox" - aria-expanded="false" -> - <div class="position-relative"> - <!-- '"` --><!-- </textarea></xmp> --></option></form><form class="js-site-search-form" role="search" aria-label="Site" data-scope-type="Repository" data-scope-id="132626836" data-scoped-search-url="/wanchanglin/isolab/search" data-unscoped-search-url="/search" action="/wanchanglin/isolab/search" accept-charset="UTF-8" method="get"><input name="utf8" type="hidden" value="✓" /> - <label class="form-control input-sm header-search-wrapper p-0 header-search-wrapper-jump-to position-relative d-flex flex-justify-between flex-items-center js-chromeless-input-container"> - <input type="text" - class="form-control input-sm header-search-input jump-to-field js-jump-to-field js-site-search-focus js-site-search-field is-clearable" - 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<div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> - <svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 12 16" version="1.1" role="img"><path fill-rule="evenodd" d="M4 9H3V8h1v1zm0-3H3v1h1V6zm0-2H3v1h1V4zm0-2H3v1h1V2zm8-1v12c0 .55-.45 1-1 1H6v2l-1.5-1.5L3 16v-2H1c-.55 0-1-.45-1-1V1c0-.55.45-1 1-1h10c.55 0 1 .45 1 1zm-1 10H1v2h2v-1h3v1h5v-2zm0-10H2v9h9V1z"/></svg> - <svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 15 16" version="1.1" role="img"><path fill-rule="evenodd" d="M10 12h3V2h-3v10zm-4-2h3V2H6v8zm-4 4h3V2H2v12zm-1 1h13V1H1v14zM14 0H1a1 1 0 0 0-1 1v14a1 1 0 0 0 1 1h13a1 1 0 0 0 1-1V1a1 1 0 0 0-1-1z"/></svg> - <svg height="16" width="16" class="octicon octicon-search flex-shrink-0 js-jump-to-octicon-search d-none" title="Search" aria-label="Search" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M15.7 13.3l-3.81-3.83A5.93 5.93 0 0 0 13 6c0-3.31-2.69-6-6-6S1 2.69 1 6s2.69 6 6 6c1.3 0 2.48-.41 3.47-1.11l3.83 3.81c.19.2.45.3.7.3.25 0 .52-.09.7-.3a.996.996 0 0 0 0-1.41v.01zM7 10.7c-2.59 0-4.7-2.11-4.7-4.7 0-2.59 2.11-4.7 4.7-4.7 2.59 0 4.7 2.11 4.7 4.7 0 2.59-2.11 4.7-4.7 4.7z"/></svg> - </div> - - <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> - - <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> - </div> - - <div class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none js-jump-to-badge-search"> - <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> - In this repository - </span> - <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> - All GitHub - </span> - <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> - </div> - - <div aria-hidden="true" class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> - Jump to - <span class="d-inline-block ml-1 v-align-middle">↵</span> - </div> - </a> -</li> - -</ul> - -<ul class="d-none js-jump-to-no-results-template-container"> - <li class="d-flex flex-justify-center flex-items-center f5 d-none js-jump-to-suggestion p-2"> - <span class="text-gray">No suggested jump to results</span> - </li> -</ul> - -<ul id="jump-to-results" role="listbox" class="p-0 m-0 js-navigation-container jump-to-suggestions-results-container js-jump-to-suggestions-results-container"> - - -<li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-scoped-search d-none" role="option"> - <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href=""> - <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> - <svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 12 16" version="1.1" role="img"><path fill-rule="evenodd" d="M4 9H3V8h1v1zm0-3H3v1h1V6zm0-2H3v1h1V4zm0-2H3v1h1V2zm8-1v12c0 .55-.45 1-1 1H6v2l-1.5-1.5L3 16v-2H1c-.55 0-1-.45-1-1V1c0-.55.45-1 1-1h10c.55 0 1 .45 1 1zm-1 10H1v2h2v-1h3v1h5v-2zm0-10H2v9h9V1z"/></svg> - <svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 15 16" version="1.1" role="img"><path fill-rule="evenodd" d="M10 12h3V2h-3v10zm-4-2h3V2H6v8zm-4 4h3V2H2v12zm-1 1h13V1H1v14zM14 0H1a1 1 0 0 0-1 1v14a1 1 0 0 0 1 1h13a1 1 0 0 0 1-1V1a1 1 0 0 0-1-1z"/></svg> - <svg height="16" width="16" class="octicon octicon-search flex-shrink-0 js-jump-to-octicon-search d-none" title="Search" aria-label="Search" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M15.7 13.3l-3.81-3.83A5.93 5.93 0 0 0 13 6c0-3.31-2.69-6-6-6S1 2.69 1 6s2.69 6 6 6c1.3 0 2.48-.41 3.47-1.11l3.83 3.81c.19.2.45.3.7.3.25 0 .52-.09.7-.3a.996.996 0 0 0 0-1.41v.01zM7 10.7c-2.59 0-4.7-2.11-4.7-4.7 0-2.59 2.11-4.7 4.7-4.7 2.59 0 4.7 2.11 4.7 4.7 0 2.59-2.11 4.7-4.7 4.7z"/></svg> - </div> - - <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> - - <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> - </div> - - <div class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none js-jump-to-badge-search"> - <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> - In this repository - </span> - <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> - All GitHub - </span> - <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> - </div> - - <div aria-hidden="true" class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> - Jump to - <span class="d-inline-block ml-1 v-align-middle">↵</span> - </div> - </a> -</li> - - - -<li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-global-search d-none" role="option"> - <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href=""> - <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> - <svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 12 16" version="1.1" role="img"><path fill-rule="evenodd" d="M4 9H3V8h1v1zm0-3H3v1h1V6zm0-2H3v1h1V4zm0-2H3v1h1V2zm8-1v12c0 .55-.45 1-1 1H6v2l-1.5-1.5L3 16v-2H1c-.55 0-1-.45-1-1V1c0-.55.45-1 1-1h10c.55 0 1 .45 1 1zm-1 10H1v2h2v-1h3v1h5v-2zm0-10H2v9h9V1z"/></svg> - <svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 15 16" version="1.1" role="img"><path fill-rule="evenodd" d="M10 12h3V2h-3v10zm-4-2h3V2H6v8zm-4 4h3V2H2v12zm-1 1h13V1H1v14zM14 0H1a1 1 0 0 0-1 1v14a1 1 0 0 0 1 1h13a1 1 0 0 0 1-1V1a1 1 0 0 0-1-1z"/></svg> - <svg height="16" width="16" class="octicon octicon-search flex-shrink-0 js-jump-to-octicon-search d-none" title="Search" aria-label="Search" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M15.7 13.3l-3.81-3.83A5.93 5.93 0 0 0 13 6c0-3.31-2.69-6-6-6S1 2.69 1 6s2.69 6 6 6c1.3 0 2.48-.41 3.47-1.11l3.83 3.81c.19.2.45.3.7.3.25 0 .52-.09.7-.3a.996.996 0 0 0 0-1.41v.01zM7 10.7c-2.59 0-4.7-2.11-4.7-4.7 0-2.59 2.11-4.7 4.7-4.7 2.59 0 4.7 2.11 4.7 4.7 0 2.59-2.11 4.7-4.7 4.7z"/></svg> - </div> - - <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> - - <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> - </div> - - <div class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none js-jump-to-badge-search"> - <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> - In this repository - </span> - <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> - All GitHub - </span> - <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> - </div> - - <div aria-hidden="true" class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> - Jump to - <span class="d-inline-block ml-1 v-align-middle">↵</span> - </div> - </a> -</li> - - -</ul> - - </div> - </label> -</form> </div> -</div> - - </div> - - <a href="/login?return_to=%2Fwanchanglin%2Fisolab" - class="HeaderMenu-link no-underline mr-3" - data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header menu","repository_id":null,"auth_type":"SIGN_UP","client_id":null,"originating_request_id":"DF72:73F6:96CE7:EEB59:5D89DA44","originating_url":"https://github.com/wanchanglin/isolab","referrer":null,"user_id":null}}" data-hydro-click-hmac="2bbd3ece1feb1435bf2af526154d218cf1249395a51fba0e41889e65787d6e0a" - data-ga-click="(Logged out) Header, clicked Sign in, text:sign-in"> - Sign in - </a> - <a href="/join" - class="HeaderMenu-link d-inline-block no-underline border border-gray-dark rounded-1 px-2 py-1" - data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header menu","repository_id":null,"auth_type":"SIGN_UP","client_id":null,"originating_request_id":"DF72:73F6:96CE7:EEB59:5D89DA44","originating_url":"https://github.com/wanchanglin/isolab","referrer":null,"user_id":null}}" data-hydro-click-hmac="2bbd3ece1feb1435bf2af526154d218cf1249395a51fba0e41889e65787d6e0a" - data-ga-click="(Logged out) Header, clicked Sign up, text:sign-up"> - Sign up - </a> - </div> - </div> - </div> -</header> - - </div> - - <div id="start-of-content" class="show-on-focus"></div> - - - <div id="js-flash-container"> - -</div> - - - - <div class="application-main " data-commit-hovercards-enabled> - <div itemscope itemtype="http://schema.org/SoftwareSourceCode" class=""> - <main id="js-repo-pjax-container" data-pjax-container > - - - - - - - - - - - - - <div class="pagehead repohead instapaper_ignore readability-menu experiment-repo-nav "> - <div class="repohead-details-container clearfix container"> - - <ul class="pagehead-actions"> - - - - - <li> - - <a class="tooltipped tooltipped-s btn btn-sm btn-with-count" aria-label="You must be signed in to watch a repository" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"notification subscription menu watch","repository_id":null,"auth_type":"LOG_IN","client_id":null,"originating_request_id":"DF72:73F6:96CE7:EEB59:5D89DA44","originating_url":"https://github.com/wanchanglin/isolab","referrer":null,"user_id":null}}" data-hydro-click-hmac="d28d1f404daf088682782950e84fe91a5e36d45a511b72cfa375d5ad5d6545b3" href="/login?return_to=%2Fwanchanglin%2Fisolab"> - <svg class="octicon octicon-eye v-align-text-bottom" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M8.06 2C3 2 0 8 0 8s3 6 8.06 6C13 14 16 8 16 8s-3-6-7.94-6zM8 12c-2.2 0-4-1.78-4-4 0-2.2 1.8-4 4-4 2.22 0 4 1.8 4 4 0 2.22-1.78 4-4 4zm2-4c0 1.11-.89 2-2 2-1.11 0-2-.89-2-2 0-1.11.89-2 2-2 1.11 0 2 .89 2 2z"/></svg> - Watch -</a> <a class="social-count" href="/wanchanglin/isolab/watchers" - aria-label="1 user is watching this repository"> - 1 - </a> - - </li> - - <li> - <a class="btn btn-sm btn-with-count tooltipped tooltipped-s" aria-label="You must be signed in to star a repository" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"star button","repository_id":132626836,"auth_type":"LOG_IN","client_id":null,"originating_request_id":"DF72:73F6:96CE7:EEB59:5D89DA44","originating_url":"https://github.com/wanchanglin/isolab","referrer":null,"user_id":null}}" data-hydro-click-hmac="61779c564b80d04c18a647b20ce438fb2170af20f53b33b6f3783e35e87dd16b" href="/login?return_to=%2Fwanchanglin%2Fisolab"> - <svg class="octicon octicon-star v-align-text-bottom" viewBox="0 0 14 16" version="1.1" width="14" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M14 6l-4.9-.64L7 1 4.9 5.36 0 6l3.6 3.26L2.67 14 7 11.67 11.33 14l-.93-4.74L14 6z"/></svg> - Star -</a> - <a class="social-count js-social-count" href="/wanchanglin/isolab/stargazers" - aria-label="0 users starred this repository"> - 0 - </a> - - </li> - - <li> - <a class="btn btn-sm btn-with-count tooltipped tooltipped-s" aria-label="You must be signed in to fork a repository" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"repo details fork button","repository_id":132626836,"auth_type":"LOG_IN","client_id":null,"originating_request_id":"DF72:73F6:96CE7:EEB59:5D89DA44","originating_url":"https://github.com/wanchanglin/isolab","referrer":null,"user_id":null}}" data-hydro-click-hmac="c2e29e2a4f19ae7e7a277a0acb3846a46b4b01b41c54eeca44047382bf9e02d5" href="/login?return_to=%2Fwanchanglin%2Fisolab"> - <svg class="octicon octicon-repo-forked v-align-text-bottom" viewBox="0 0 10 16" version="1.1" width="10" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M8 1a1.993 1.993 0 0 0-1 3.72V6L5 8 3 6V4.72A1.993 1.993 0 0 0 2 1a1.993 1.993 0 0 0-1 3.72V6.5l3 3v1.78A1.993 1.993 0 0 0 5 15a1.993 1.993 0 0 0 1-3.72V9.5l3-3V4.72A1.993 1.993 0 0 0 8 1zM2 4.2C1.34 4.2.8 3.65.8 3c0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2zm3 10c-.66 0-1.2-.55-1.2-1.2 0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2zm3-10c-.66 0-1.2-.55-1.2-1.2 0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2z"/></svg> - Fork -</a> - <a href="/wanchanglin/isolab/network/members" class="social-count" - aria-label="0 users forked this repository"> - 0 - </a> - </li> -</ul> - - <h1 class="public "> - <svg class="octicon octicon-repo" viewBox="0 0 12 16" version="1.1" width="12" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M4 9H3V8h1v1zm0-3H3v1h1V6zm0-2H3v1h1V4zm0-2H3v1h1V2zm8-1v12c0 .55-.45 1-1 1H6v2l-1.5-1.5L3 16v-2H1c-.55 0-1-.45-1-1V1c0-.55.45-1 1-1h10c.55 0 1 .45 1 1zm-1 10H1v2h2v-1h3v1h5v-2zm0-10H2v9h9V1z"/></svg> - <span class="author" itemprop="author"><a class="url fn" rel="author" data-hovercard-type="user" data-hovercard-url="/hovercards?user_id=17029420" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="/wanchanglin">wanchanglin</a></span><!-- ---><span class="path-divider">/</span><!-- ---><strong itemprop="name"><a data-pjax="#js-repo-pjax-container" href="/wanchanglin/isolab">isolab</a></strong> - - -</h1> - - </div> - -<nav class="hx_reponav reponav js-repo-nav js-sidenav-container-pjax container" - itemscope - itemtype="http://schema.org/BreadcrumbList" - aria-label="Repository" - data-pjax="#js-repo-pjax-container"> - - <span itemscope itemtype="http://schema.org/ListItem" itemprop="itemListElement"> - <a class="js-selected-navigation-item selected reponav-item" itemprop="url" data-hotkey="g c" aria-current="page" data-selected-links="repo_source repo_downloads repo_commits repo_releases repo_tags repo_branches repo_packages /wanchanglin/isolab" href="/wanchanglin/isolab"> - 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<button type="submit" class="position-absolute top-0 right-0 btn-link link-gray" data-ga-click="(Logged out) Sign up prompt, clicked Dismiss, text:dismiss"> - Dismiss - </button> -</form> <h3 class="pt-2">Join GitHub today</h3> - <p class="col-6 mx-auto">GitHub is home to over 40 million developers working together to host and review code, manage projects, and build software together.</p> - <a class="btn btn-primary" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"files signup prompt","repository_id":null,"auth_type":"SIGN_UP","client_id":null,"originating_request_id":"DF72:73F6:96CE7:EEB59:5D89DA44","originating_url":"https://github.com/wanchanglin/isolab","referrer":null,"user_id":null}}" data-hydro-click-hmac="974768b8d0a0188cf5cacd94743debbe4acf691556cc32bf3178f45d6dee36c5" data-ga-click="(Logged out) Sign up prompt, clicked Sign up, text:sign-up" href="/join?source=prompt-code">Sign up</a> - </div> - </div> - </div> - - - <div class="mb-3"> <div class="f4"> - <em class="d-block text-gray"> - No description, website, or topics provided. - </em> - </div> -</div> - - - - - <div class="overall-summary overall-summary-bottomless"> - <ul class="numbers-summary"> - <li class="commits"> - <a data-pjax href="/wanchanglin/isolab/commits/master"> - <svg class="octicon octicon-history" viewBox="0 0 14 16" version="1.1" width="14" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M8 13H6V6h5v2H8v5zM7 1C4.81 1 2.87 2.02 1.59 3.59L0 2v4h4L2.5 4.5C3.55 3.17 5.17 2.3 7 2.3c3.14 0 5.7 2.56 5.7 5.7s-2.56 5.7-5.7 5.7A5.71 5.71 0 0 1 1.3 8c0-.34.03-.67.09-1H.08C.03 7.33 0 7.66 0 8c0 3.86 3.14 7 7 7s7-3.14 7-7-3.14-7-7-7z"/></svg> - <span class="num text-emphasized"> - 49 - </span> - commits - </a> - </li> - <li> - <a data-pjax href="/wanchanglin/isolab/branches"> - <svg class="octicon octicon-git-branch" viewBox="0 0 10 16" version="1.1" width="10" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M10 5c0-1.11-.89-2-2-2a1.993 1.993 0 0 0-1 3.72v.3c-.02.52-.23.98-.63 1.38-.4.4-.86.61-1.38.63-.83.02-1.48.16-2 .45V4.72a1.993 1.993 0 0 0-1-3.72C.88 1 0 1.89 0 3a2 2 0 0 0 1 1.72v6.56c-.59.35-1 .99-1 1.72 0 1.11.89 2 2 2 1.11 0 2-.89 2-2 0-.53-.2-1-.53-1.36.09-.06.48-.41.59-.47.25-.11.56-.17.94-.17 1.05-.05 1.95-.45 2.75-1.25S8.95 7.77 9 6.73h-.02C9.59 6.37 10 5.73 10 5zM2 1.8c.66 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2C1.35 4.2.8 3.65.8 3c0-.65.55-1.2 1.2-1.2zm0 12.41c-.66 0-1.2-.55-1.2-1.2 0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2zm6-8c-.66 0-1.2-.55-1.2-1.2 0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2z"/></svg> - <span class="num text-emphasized"> - 1 - </span> - branch - </a> - </li> - - - <li> - <a href="/wanchanglin/isolab/releases"> - <svg class="octicon octicon-tag" viewBox="0 0 14 16" version="1.1" width="14" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M7.73 1.73C7.26 1.26 6.62 1 5.96 1H3.5C2.13 1 1 2.13 1 3.5v2.47c0 .66.27 1.3.73 1.77l6.06 6.06c.39.39 1.02.39 1.41 0l4.59-4.59a.996.996 0 0 0 0-1.41L7.73 1.73zM2.38 7.09c-.31-.3-.47-.7-.47-1.13V3.5c0-.88.72-1.59 1.59-1.59h2.47c.42 0 .83.16 1.13.47l6.14 6.13-4.73 4.73-6.13-6.15zM3.01 3h2v2H3V3h.01z"/></svg> - <span class="num text-emphasized"> - 0 - </span> - releases - </a> - </li> - - - <li > - <a href="/wanchanglin/isolab/graphs/contributors"> - <svg class="octicon octicon-organization" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M16 12.999c0 .439-.45 1-1 1H7.995c-.539 0-.994-.447-.995-.999H1c-.54 0-1-.561-1-1 0-2.634 3-4 3-4s.229-.409 0-1c-.841-.621-1.058-.59-1-3 .058-2.419 1.367-3 2.5-3s2.442.58 2.5 3c.058 2.41-.159 2.379-1 3-.229.59 0 1 0 1s1.549.711 2.42 2.088C9.196 9.369 10 8.999 10 8.999s.229-.409 0-1c-.841-.62-1.058-.59-1-3 .058-2.419 1.367-3 2.5-3s2.437.581 2.495 3c.059 2.41-.158 2.38-1 3-.229.59 0 1 0 1s3.005 1.366 3.005 4z"/></svg> - <span class="num text-emphasized"> - 2 - </span> - contributors -</a> - </li> - - </ul> - </div> - - <details class="details-reset"> - <summary title="Click for language details" data-ga-click="Repository, language bar stats toggle, location:repo overview"> - <div class="d-flex repository-lang-stats-graph"> - <span class="language-color" aria-label="R 96.8%" style="width:96.8%; background-color:#198CE7;" itemprop="keywords">R</span> - <span class="language-color" aria-label="Shell 3.2%" style="width:3.2%; background-color:#89e051;" itemprop="keywords">Shell</span> - </div> - </summary> - <div class="repository-lang-stats"> - <ol class="repository-lang-stats-numbers"> - <li> - <a href="/wanchanglin/isolab/search?l=r" data-ga-click="Repository, language stats search click, location:repo overview"> - <span class="color-block language-color" style="background-color:#198CE7;"></span> - <span class="lang">R</span> - <span class="percent">96.8%</span> - </a> - </li> - <li> - <a href="/wanchanglin/isolab/search?l=shell" data-ga-click="Repository, language stats search click, location:repo overview"> - <span class="color-block language-color" style="background-color:#89e051;"></span> - <span class="lang">Shell</span> - <span class="percent">3.2%</span> - </a> - </li> - </ol> - </div> - </details> - - - - - - - <div class="file-navigation in-mid-page d-flex flex-items-start"> - -<details class="details-reset details-overlay select-menu branch-select-menu hx_rsm" id="branch-select-menu"> - <summary class="btn btn-sm select-menu-button css-truncate" - data-hotkey="w" - title="Switch branches or tags"> - <i>Branch:</i> - <span class="css-truncate-target" data-menu-button>master</span> - </summary> - - <details-menu class="select-menu-modal hx_rsm-modal position-absolute" style="z-index: 99;" src="/wanchanglin/isolab/ref-list/master?source_action=disambiguate&source_controller=files" preload> - <include-fragment class="select-menu-loading-overlay anim-pulse"> - <svg height="32" class="octicon octicon-octoface" viewBox="0 0 16 16" version="1.1" width="32" aria-hidden="true"><path fill-rule="evenodd" d="M14.7 5.34c.13-.32.55-1.59-.13-3.31 0 0-1.05-.33-3.44 1.3-1-.28-2.07-.32-3.13-.32s-2.13.04-3.13.32c-2.39-1.64-3.44-1.3-3.44-1.3-.68 1.72-.26 2.99-.13 3.31C.49 6.21 0 7.33 0 8.69 0 13.84 3.33 15 7.98 15S16 13.84 16 8.69c0-1.36-.49-2.48-1.3-3.35zM8 14.02c-3.3 0-5.98-.15-5.98-3.35 0-.76.38-1.48 1.02-2.07 1.07-.98 2.9-.46 4.96-.46 2.07 0 3.88-.52 4.96.46.65.59 1.02 1.3 1.02 2.07 0 3.19-2.68 3.35-5.98 3.35zM5.49 9.01c-.66 0-1.2.8-1.2 1.78s.54 1.79 1.2 1.79c.66 0 1.2-.8 1.2-1.79s-.54-1.78-1.2-1.78zm5.02 0c-.66 0-1.2.79-1.2 1.78s.54 1.79 1.2 1.79c.66 0 1.2-.8 1.2-1.79s-.53-1.78-1.2-1.78z"/></svg> - </include-fragment> - </details-menu> -</details> - - - <button type="button" class="btn btn-sm disabled tooltipped tooltipped-n new-pull-request-btn" aria-label="You must be signed in to create a pull request"> - New pull request - </button> - - <div class="breadcrumb flex-auto"> - - </div> - - <div class="BtnGroup"> - - <a class="btn btn-sm empty-icon float-right BtnGroup-item" data-hydro-click="{"event_type":"repository.click","payload":{"target":"FIND_FILE_BUTTON","repository_id":132626836,"client_id":null,"originating_request_id":"DF72:73F6:96CE7:EEB59:5D89DA44","originating_url":"https://github.com/wanchanglin/isolab","referrer":null,"user_id":null}}" data-hydro-click-hmac="3f8e985b6a3f66c0a20094aa782a2b2453a4b021f7e68146b3b815245874ac43" data-ga-click="Repository, find file, location:repo overview" data-hotkey="t" data-pjax="true" href="/wanchanglin/isolab/find/master">Find File</a> - </div> - - - - - <details class="get-repo-select-menu js-get-repo-select-menu js-anon-get-repo-select-menu position-relative details-overlay details-reset"> - <summary class="btn btn-sm ml-2 btn-primary" data-hydro-click="{"event_type":"repository.click","payload":{"repository_id":132626836,"target":"CLONE_OR_DOWNLOAD_BUTTON","client_id":null,"originating_request_id":"DF72:73F6:96CE7:EEB59:5D89DA44","originating_url":"https://github.com/wanchanglin/isolab","referrer":null,"user_id":null}}" data-hydro-click-hmac="b6727d95e7b3d2e5b04dfbf2336ad836d7e501bcf0ea0eee4ea70c2e095f25f4"> - Clone or download - <span class="dropdown-caret"></span> -</summary> <div class="position-relative"> - <div class="get-repo-modal dropdown-menu dropdown-menu-sw pb-0 js-toggler-container js-get-repo-modal"> - - <div class="get-repo-modal-options"> - <div class="clone-options https-clone-options"> - - <h4 class="mb-1"> - Clone with HTTPS - <a class="muted-link" href="https://help.github.com/articles/which-remote-url-should-i-use" target="_blank" title="Which remote URL should I use?"> - <svg class="octicon octicon-question" viewBox="0 0 14 16" version="1.1" width="14" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M6 10h2v2H6v-2zm4-3.5C10 8.64 8 9 8 9H6c0-.55.45-1 1-1h.5c.28 0 .5-.22.5-.5v-1c0-.28-.22-.5-.5-.5h-1c-.28 0-.5.22-.5.5V7H4c0-1.5 1.5-3 3-3s3 1 3 2.5zM7 2.3c3.14 0 5.7 2.56 5.7 5.7s-2.56 5.7-5.7 5.7A5.71 5.71 0 0 1 1.3 8c0-3.14 2.56-5.7 5.7-5.7zM7 1C3.14 1 0 4.14 0 8s3.14 7 7 7 7-3.14 7-7-3.14-7-7-7z"/></svg> - </a> - </h4> - <p class="mb-2 get-repo-decription-text"> - Use Git or checkout with SVN using the web URL. - </p> - - <div class="input-group"> - <input type="text" class="form-control input-monospace input-sm" data-autoselect value="https://github.com/wanchanglin/isolab.git" aria-label="Clone this repository at https://github.com/wanchanglin/isolab.git" readonly> - <div class="input-group-button"> - <clipboard-copy value="https://github.com/wanchanglin/isolab.git" aria-label="Copy to clipboard" class="btn btn-sm" data-hydro-click="{"event_type":"clone_or_download.click","payload":{"feature_clicked":"COPY_URL","git_repository_type":"REPOSITORY","repository_id":132626836,"client_id":null,"originating_request_id":"DF72:73F6:96CE7:EEB59:5D89DA44","originating_url":"https://github.com/wanchanglin/isolab","referrer":null,"user_id":null}}" data-hydro-click-hmac="d75b2cd61fef65cc896e9cc034c975dac9e3b49f493589679bee33eaa84fa64c"><svg class="octicon octicon-clippy" viewBox="0 0 14 16" version="1.1" width="14" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M2 13h4v1H2v-1zm5-6H2v1h5V7zm2 3V8l-3 3 3 3v-2h5v-2H9zM4.5 9H2v1h2.5V9zM2 12h2.5v-1H2v1zm9 1h1v2c-.02.28-.11.52-.3.7-.19.18-.42.28-.7.3H1c-.55 0-1-.45-1-1V4c0-.55.45-1 1-1h3c0-1.11.89-2 2-2 1.11 0 2 .89 2 2h3c.55 0 1 .45 1 1v5h-1V6H1v9h10v-2zM2 5h8c0-.55-.45-1-1-1H8c-.55 0-1-.45-1-1s-.45-1-1-1-1 .45-1 1-.45 1-1 1H3c-.55 0-1 .45-1 1z"/></svg></clipboard-copy> - </div> -</div> - - </div> - - <div class="mt-2"> - -<a class="btn btn-outline get-repo-btn js-anon-download-zip-link " rel="nofollow" data-hydro-click="{"event_type":"clone_or_download.click","payload":{"feature_clicked":"DOWNLOAD_ZIP","git_repository_type":"REPOSITORY","repository_id":132626836,"client_id":null,"originating_request_id":"DF72:73F6:96CE7:EEB59:5D89DA44","originating_url":"https://github.com/wanchanglin/isolab","referrer":null,"user_id":null}}" data-hydro-click-hmac="3f8d17cade212500993a655a6a9e96538550aefe3ed525fbf8f6796695210e65" data-ga-click="Repository, download zip, location:repo overview" href="/wanchanglin/isolab/archive/master.zip">Download ZIP</a> - - </div> - </div> - - <div class="js-modal-downloading" hidden> - <div class="py-2 px-3"> - <h4 class="lh-condensed mb-3">Downloading<span class="animated-ellipsis-container"><span class="animated-ellipsis">...</span></span></h4> - <p class="text-gray"> - Want to be notified of new releases in - <span class="text-bold">wanchanglin/isolab</span>? - 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<h3 class="Box-title pr-3"> - <svg class="octicon octicon-book" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M3 5h4v1H3V5zm0 3h4V7H3v1zm0 2h4V9H3v1zm11-5h-4v1h4V5zm0 2h-4v1h4V7zm0 2h-4v1h4V9zm2-6v9c0 .55-.45 1-1 1H9.5l-1 1-1-1H2c-.55 0-1-.45-1-1V3c0-.55.45-1 1-1h5.5l1 1 1-1H15c.55 0 1 .45 1 1zm-8 .5L7.5 3H2v9h6V3.5zm7-.5H9.5l-.5.5V12h6V3z"/></svg> - README.md - </h3> - </div> - <div class="Popover anim-scale-in js-tagsearch-popover" - hidden - data-tagsearch-url="/wanchanglin/isolab/find-symbols" - data-tagsearch-ref="master" - data-tagsearch-path="README.md" - data-tagsearch-lang="Markdown" - data-hydro-click="{"event_type":"code_navigation.click_on_symbol","payload":{"action":"click_on_symbol","repository_id":132626836,"ref":"master","client_id":null,"originating_request_id":"DF72:73F6:96CE7:EEB59:5D89DA44","originating_url":"https://github.com/wanchanglin/isolab","referrer":null,"user_id":null}}" - data-hydro-click-hmac="f72a4c22d9286db2651a41658fcf4fe4c9811fbc0a2e080dfba2478dbcd49daf"> - <div class="Popover-message Popover-message--large Popover-message--top-left TagsearchPopover mt-1 mb-4 mx-auto Box box-shadow-large"> - <div class="TagsearchPopover-content js-tagsearch-popover-content overflow-auto" style="will-change:transform;"> - </div> - </div> -</div> - - <div class="Box-body"> - <article class="markdown-body entry-content p-5" itemprop="text"><h1><a id="user-content-isolab-for-galaxy" class="anchor" aria-hidden="true" href="#isolab-for-galaxy"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>isolab for Galaxy</h1> -<p>This is Galaxy tool for R package -<a href="https://github.com/RuggeroFerrazza/IsotopicLabelling">IsotopicLabelling</a> -which analyses mass spectrometric isotopic patterns obtained following -isotopic labelling experiments. For more details, see the -<a href="https://academic.oup.com/bioinformatics/article/33/2/300/2525697" rel="nofollow">IsotopicLabelling: an R package for the analysis of MS isotopic patterns of -labelled -analytes</a>.</p> -<h2><a id="user-content-installation" class="anchor" aria-hidden="true" href="#installation"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>Installation</h2> -<ul> -<li> -<p>Install <a href="https://github.com/galaxyproject/galaxy">Galaxy</a> under Linux.</p> -</li> -<li> -<p>Install <a href="https://docs.conda.io/en/latest/miniconda.html" rel="nofollow">conda</a> under -Linux. <code>conda</code> is used to install <code>requirements</code> of this tool.</p> -</li> -<li> -<p>Use <code>git</code> to clone this tool</p> -<div class="highlight highlight-source-shell"><pre>git clone https://github.com/wanchanglin/isolab.git</pre></div> -</li> -<li> -<p>Add this tool's location into Galaxy' tool config file: -<code>~/Galaxy/config/tool_conf.xml</code>. For example, one simplified -<code>tool_conf.xml</code> looks like:</p> -<div class="highlight highlight-text-xml"><pre><?<span class="pl-ent">xml</span><span class="pl-e"> version</span>=<span class="pl-s"><span class="pl-pds">'</span>1.0<span class="pl-pds">'</span></span><span class="pl-e"> encoding</span>=<span class="pl-s"><span class="pl-pds">'</span>utf-8<span class="pl-pds">'</span></span>?> -<<span class="pl-ent">toolbox</span> <span class="pl-e">monitor</span>=<span class="pl-s"><span class="pl-pds">"</span>true<span class="pl-pds">"</span></span>> - - <<span class="pl-ent">section</span> <span class="pl-e">id</span>=<span class="pl-s"><span class="pl-pds">"</span>getext<span class="pl-pds">"</span></span> <span class="pl-e">name</span>=<span class="pl-s"><span class="pl-pds">"</span>Get Data<span class="pl-pds">"</span></span>> - <<span class="pl-ent">tool</span> <span class="pl-e">file</span>=<span class="pl-s"><span class="pl-pds">"</span>data_source/upload.xml<span class="pl-pds">"</span></span> /> - </<span class="pl-ent">section</span>> - - <<span class="pl-ent">section</span> <span class="pl-e">id</span>=<span class="pl-s"><span class="pl-pds">"</span>MyTools<span class="pl-pds">"</span></span> <span class="pl-e">name</span>=<span class="pl-s"><span class="pl-pds">"</span>My Tools<span class="pl-pds">"</span></span>> - <<span class="pl-ent">tool</span> <span class="pl-e">file</span>=<span class="pl-s"><span class="pl-pds">"</span>/path/to/isolab/isolab.xml<span class="pl-pds">"</span></span> /> - </<span class="pl-ent">section</span>> - -</<span class="pl-ent">toolbox</span>></pre></div> -</li> -<li> -<p>The Galaxy tool uses <a href="https://cran.r-project.org/" rel="nofollow">R</a> packages <code>optparse</code>, -<code>WriteXLS</code> and <code>gsubfn</code>. All of these packages will be installed by -<code>conda</code> in its virtual environment. Two R packages <code>IsotopicLabelling</code> and -<code>ecipes</code> are already included.</p> -</li> -<li> -<p>Some test data are located in <code>test-data</code>.</p> -</li> -</ul> -<h2><a id="user-content-notes" class="anchor" aria-hidden="true" href="#notes"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>Notes</h2> -<ul> -<li><code>planemo test</code> compares the history results in <code>test-data/res</code> produced by -shell scripts in <code>test</code>. (27-03-2019, Wed)</li> -<li>White spaces in <code>groups</code> input: Group factor delimiter is comma. No any -extra white spaces are allowed otherwise an error will be encountered. -Note that <code>isolab.sh</code> has no problem with white spaces. Probably it is -'Cheetah' or Galaxy's text input problem. (31-05-2018, Thu)</li> -</ul> -<h2><a id="user-content-authors-contributors--contacts" class="anchor" aria-hidden="true" href="#authors-contributors--contacts"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>Authors, contributors & contacts</h2> -<ul> -<li>Wanchang Lin (<a href="mailto:wl361@cam.ac.uk">wl361@cam.ac.uk</a>), University of Cambridge</li> -<li>Julian L Griffin (<a href="mailto:jlg40@cam.ac.uk">jlg40@cam.ac.uk</a>), University of Cambridge</li> -</ul> -</article> - </div> - </div> - - - - </div> -</div> - - </main> - </div> - - - </div> - 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