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comparison tools/convert/Kegg2Sbml/Kegg2Sbml.xml @ 9:0976a6257300 draft

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planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 05db35f63cadb9d56dafff594a3507c59cd85273
author metexplore
date Fri, 31 Jan 2025 18:28:53 +0000
parents 7a6f2380fc1d
children 6a112eaf8f38
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8:1274e2a62479 9:0976a6257300
1 <?xml version="1.0" encoding="UTF-8"?> 1 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 <tool id="met4j_Kegg2Sbml" name="Kegg2Sbml" version="MET4J_VERSION_TEST"> 2 <tool id="met4j_Kegg2Sbml" name="Kegg2Sbml" version="develop">
3 <description>Build a SBML file from KEGG organism-specific pathways. Uses Kegg API.</description> 3 <description>Build a SBML file from KEGG organism-specific pathways. Uses Kegg API.</description>
4 <xrefs> 4 <xrefs>
5 <xref type="bio.tools">met4j</xref> 5 <xref type="bio.tools">met4j</xref>
6 </xrefs> 6 </xrefs>
7 <requirements> 7 <requirements>
8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:MET4J_VERSION_TEST</container> 8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:develop</container>
9 </requirements> 9 </requirements>
10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.Kegg2Sbml#if str($org): 10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.Kegg2Sbml#if str($org):
11 -org "$org" 11 -org "$org"
12 #end if 12 #end if
13 -sbml "$sbml" 13 -o "$sbml"
14 ]]></command> 14 ]]></command>
15 <inputs> 15 <inputs>
16 <param argument="-org" label="[] Kegg org id. Must be 3 letters (" name="org" optional="true" type="text" value=""> 16 <param argument="-org" label="[] Kegg org id. Must be 3 letters (" name="org" optional="true" type="text" value="">
17 <sanitizer invalid_char="_"> 17 <sanitizer invalid_char="_">
18 <valid initial="string.printable"/> 18 <valid initial="string.printable"/>