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comparison tools/reconstruction/SbmlCheckBalance/SbmlCheckBalance.xml @ 9:0976a6257300 draft

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planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 05db35f63cadb9d56dafff594a3507c59cd85273
author metexplore
date Fri, 31 Jan 2025 18:28:53 +0000
parents 7a6f2380fc1d
children 6a112eaf8f38
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8:1274e2a62479 9:0976a6257300
1 <?xml version="1.0" encoding="UTF-8"?> 1 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 <tool id="met4j_SbmlCheckBalance" name="SbmlCheckBalance" version="MET4J_VERSION_TEST"> 2 <tool id="met4j_SbmlCheckBalance" name="SbmlCheckBalance" version="develop">
3 <description>Check balance of all the reactions in a SBML.</description> 3 <description>Check balance of all the reactions in a SBML.</description>
4 <xrefs> 4 <xrefs>
5 <xref type="bio.tools">met4j</xref> 5 <xref type="bio.tools">met4j</xref>
6 </xrefs> 6 </xrefs>
7 <requirements> 7 <requirements>
8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:MET4J_VERSION_TEST</container> 8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:develop</container>
9 </requirements> 9 </requirements>
10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh reconstruction.SbmlCheckBalance -sbml "$sbml" 10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh reconstruction.SbmlCheckBalance -i "$sbml"
11 -out "$out" 11 -out "$out"
12 ]]></command> 12 ]]></command>
13 <inputs> 13 <inputs>
14 <param argument="-sbml" format="sbml" label="Original sbml file" name="sbml" optional="false" type="data" value=""/> 14 <param argument="-i" format="sbml" label="Input Sbml file" name="sbml" optional="false" type="data" value=""/>
15 </inputs> 15 </inputs>
16 <outputs> 16 <outputs>
17 <data format="tsv" name="out"/> 17 <data format="tsv" name="out"/>
18 </outputs> 18 </outputs>
19 <tests/> 19 <tests/>