Mercurial > repos > metexplore > met4j

diff tools/reconstruction/SbmlCheckBalance/SbmlCheckBalance.xml @ 9:0976a6257300 draft

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planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 05db35f63cadb9d56dafff594a3507c59cd85273
author metexplore
date Fri, 31 Jan 2025 18:28:53 +0000
parents 7a6f2380fc1d
children 6a112eaf8f38
line wrap: on
line diff
--- a/tools/reconstruction/SbmlCheckBalance/SbmlCheckBalance.xml	Wed Jul 26 15:33:45 2023 +0000
+++ b/tools/reconstruction/SbmlCheckBalance/SbmlCheckBalance.xml	Fri Jan 31 18:28:53 2025 +0000
@@ -1,17 +1,17 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<tool id="met4j_SbmlCheckBalance" name="SbmlCheckBalance" version="MET4J_VERSION_TEST">
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<tool id="met4j_SbmlCheckBalance" name="SbmlCheckBalance" version="develop">
   <description>Check balance of all the reactions in a SBML.</description>
   <xrefs>
     <xref type="bio.tools">met4j</xref>
   </xrefs>
   <requirements>
-    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:MET4J_VERSION_TEST</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:develop</container>
   </requirements>
-  <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh reconstruction.SbmlCheckBalance -sbml "$sbml"
+  <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh reconstruction.SbmlCheckBalance -i "$sbml"
  -out "$out"
 ]]></command>
   <inputs>
-    <param argument="-sbml" format="sbml" label="Original sbml file" name="sbml" optional="false" type="data" value=""/>
+    <param argument="-i" format="sbml" label="Input Sbml file" name="sbml" optional="false" type="data" value=""/>
   </inputs>
   <outputs>
     <data format="tsv" name="out"/>