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comparison tools/networkAnalysis/CarbonSkeletonNet/CarbonSkeletonNet.xml @ 3:6bd9aad9626d draft

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planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a078bf88575dac3d09462252eae92c24f34d0414
author metexplore
date Fri, 29 Jul 2022 13:23:40 +0000
parents e69a78624877
children ae4c301919c4
comparison
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2:e69a78624877 3:6bd9aad9626d
1 <?xml version="1.0" encoding="UTF-8"?> 1 <?xml version="1.0" encoding="UTF-8"?>
2 <tool id="met4j_CarbonSkeletonNet" name="CarbonSkeletonNet" version="1.0.1"> 2 <tool id="met4j_CarbonSkeletonNet" name="CarbonSkeletonNet" version="1.1.0">
3 <description>Create a carbon skeleton graph representation of a SBML file content, using GSAM atom-mapping file (see https://forgemia.inra.fr/metexplore/gsam)</description> 3 <description>Create a carbon skeleton graph representation of a SBML file content, using GSAM atom-mapping file (see https://forgemia.inra.fr/metexplore/gsam)</description>
4 <xrefs> 4 <xrefs>
5 <xref type="bio.tools">met4j</xref> 5 <xref type="bio.tools">met4j</xref>
6 </xrefs> 6 </xrefs>
7 <requirements> 7 <requirements>
8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> 8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container>
9 </requirements> 9 </requirements>
10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.CarbonSkeletonNet -s "$inputPath" 10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.CarbonSkeletonNet -s "$inputPath"
11 -g "$inputAAM" 11 -g "$inputAAM"
12 $keepSingleCarbon 12 $keepSingleCarbon
13 $mergeComp 13 $mergeComp