Mercurial > repos > metexplore > met4j
changeset 3:6bd9aad9626d draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a078bf88575dac3d09462252eae92c24f34d0414
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data/XF_network_R_Seed.tab Fri Jul 29 13:23:40 2022 +0000 @@ -0,0 +1,2 @@ +R_ACGS +R_GLUN
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/attributes/DecomposeSBML/DecomposeSBML.xml Fri Jul 29 13:23:40 2022 +0000 @@ -0,0 +1,60 @@ +<?xml version="1.0" encoding="UTF-8"?> +<tool id="met4j_DecomposeSBML" name="DecomposeSBML" version="1.1.0"> + <description>Parse SBML to render list of composing entities: metabolites, reactions, genes and others.</description> + <xrefs> + <xref type="bio.tools">met4j</xref> + </xrefs> + <requirements> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> + </requirements> + <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.DecomposeSBML -i "$sbml" + $printMetabolites + $printReactions + $printCompartments + $printPathways + $printGenes + $noTypeCol + -o "$outputFile" +]]></command> + <inputs> + <param argument="-i" format="sbml" label="Input SBML file" name="sbml" optional="false" type="data" value=""/> + <param argument="-m" checked="false" falsevalue="" label="Extract Metabolites" name="printMetabolites" truevalue="-m" type="boolean" value="false"/> + <param argument="-r" checked="false" falsevalue="" label="Extract Reactions" name="printReactions" truevalue="-r" type="boolean" value="false"/> + <param argument="-c" checked="false" falsevalue="" label="Extract Compartments" name="printCompartments" truevalue="-c" type="boolean" value="false"/> + <param argument="-p" checked="false" falsevalue="" label="Extract Pathways" name="printPathways" truevalue="-p" type="boolean" value="false"/> + <param argument="-g" checked="false" falsevalue="" label="Extract Genes" name="printGenes" truevalue="-g" type="boolean" value="false"/> + <param argument="-nt" checked="false" falsevalue="" label="Do not output type column" name="noTypeCol" truevalue="-nt" type="boolean" value="false"/> + </inputs> + <outputs> + <data format="tsv" name="outputFile"/> + </outputs> + <tests> + <test> + <param name="sbml" value="Human-GEM_pathways.xml"/> + <output ftype="tsv" name="outputFile"> + <assert_contents> + <has_text_matching expression="GENE" n="86"/> + <has_text_matching expression="METABOLITE" n="111"/> + <has_text_matching expression="REACTION" n="75"/> + <has_text_matching expression="PATHWAY" n="3"/> + <has_text_matching expression="COMPARTMENT" n="5"/> + </assert_contents> + </output> + </test> + <test> + <param name="sbml" value="Human-GEM_pathways.xml"/> + <param name="printReactions" value="true"/> + <param name="printMetabolites" value="true"/> + <param name="printGenes" value="true"/> + <param name="printCompartments" value="true"/> + <param name="noTypeCol" value="true"/> + <output ftype="tsv" name="outputFile"> + <assert_contents> + <has_n_lines n="277"/> + </assert_contents> + </output> + </test> + </tests> + <help><![CDATA[Parse SBML to render list of composing entities: metabolites, reactions, genes, pathways and compartments. The output file is a tsv with two columns, one with entities identifiers, and one with the entity type. If no entity type is selected, by default all of them are taken into account. Only identifiers are written, attributes can be extracted from dedicated apps or from the SBML2Tab.]]></help> + <citations/> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/attributes/DecomposeSBML/test-data/Human-GEM_pathways.xml Fri Jul 29 13:23:40 2022 +0000 @@ -0,0 +1,7661 @@ +<?xml version="1.0" encoding="UTF-8"?> +<sbml fbc:required="false" groups:required="false" level="3" version="2" xmlns="http://www.sbml.org/sbml/level3/version2/core" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1"> + <model fbc:strict="true" id="HumanGEM" metaid="HumanGEM" name="Generic genome-scale metabolic model of Homo sapiens"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Genome-scale metabolic models are valuable tools to study metabolism and provide a scaffold for the integrative analysis of omics data. This is the latest version of Human-GEM, which is a genome-scale metabolic model of a generic human cell. The objective of Human-GEM is to serve as a community model for enabling integrative and mechanistic studies of human metabolism.</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#HumanGEM"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/taxonomy/9606"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:listOfObjectives fbc:activeObjective="obj"> + <fbc:objective fbc:id="obj" fbc:type="maximize"> + <fbc:listOfFluxObjectives> + <fbc:fluxObjective fbc:coefficient="1" fbc:reaction="R_biomass_human"/> + </fbc:listOfFluxObjectives> + </fbc:objective> + </fbc:listOfObjectives> + <fbc:listOfGeneProducts> + <fbc:geneProduct fbc:id="ENSG00000023697" fbc:label="ENSG00000023697" fbc:name="ENSG00000023697" metaid="_12915ddf-e017-4a38-a80d-e9982f8ac7cc"> + <notes> + <body 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<groups:member groups:idRef="R_HMR_4490"/> + <groups:member groups:idRef="R_HMR_4383"/> + <groups:member groups:idRef="R_HMR_4297"/> + <groups:member groups:idRef="R_HMR_4385"/> + <groups:member groups:idRef="R_HMR_0454"/> + <groups:member groups:idRef="R_HMR_4320"/> + <groups:member groups:idRef="R_HMR_4386"/> + <groups:member groups:idRef="R_HMR_4310"/> + <groups:member groups:idRef="R_HMR_4387"/> + <groups:member groups:idRef="R_HMR_4399"/> + <groups:member groups:idRef="R_HMR_4356"/> + <groups:member groups:idRef="R_HMR_4400"/> + </groups:listOfMembers> + </groups:group> + </groups:listOfGroups> + <listOfUnitDefinitions> + <unitDefinition id="mmol_per_gDW_per_hr" name="mmol_per_gDW_per_hr"> + <listOfUnits> + <unit exponent="-1" kind="gram" multiplier="1" scale="0"/> + <unit exponent="1" kind="mole" multiplier="1" scale="-3"/> + <unit exponent="-1" kind="second" multiplier="3600" scale="0"/> + </listOfUnits> + </unitDefinition> + </listOfUnitDefinitions> + <listOfCompartments> + 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metaid="cdf46bb5-653c-4e4c-bf33-28c9d8abecaa" name="NADH" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00004</p> + <p>hmdb: HMDB01487</p> + <p>bigg.metabolite: nadh</p> + <p>chebi: CHEBI:16908</p> + <p>pubchem.compound: 928</p> + <p>metanetx.chemical: MNXM10</p> + <p>formula: C21H27N7O14P2</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cdf46bb5-653c-4e4c-bf33-28c9d8abecaa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00004"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01487"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadh"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16908"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/928"/> + <rdf:li 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fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_m01965c" initialConcentration="0" metaid="_94c2bee0-9d72-498c-ac24-cfc89072b989" name="glucose" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00031</p> + <p>hmdb: HMDB00122</p> + <p>bigg.metabolite: glc__D</p> + <p>chebi: CHEBI:4167</p> + <p>pubchem.compound: 5793</p> + <p>metanetx.chemical: MNXM41 || MNXM99</p> + <p>formula: C6H12O6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_94c2bee0-9d72-498c-ac24-cfc89072b989"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00031"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00122"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glc__D"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:4167"/> + 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xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a013605d-e919-4407-ac07-58f2fa04eec0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00089"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00258"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sucr"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17992"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/5988"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM167"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_m01844c" initialConcentration="0" metaid="c12fb463-a912-4ae2-a619-e6e7123535ff" name="fructose-3-phosphate" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + <p>charge: -2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="g" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_m01965g" initialConcentration="0" metaid="c3ec1b4f-c423-4fb7-ba05-e21ba291103b" name="glucose" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00031</p> + <p>hmdb: HMDB00122</p> + <p>bigg.metabolite: glc__D</p> + <p>chebi: CHEBI:4167</p> + <p>pubchem.compound: 5793</p> + <p>metanetx.chemical: MNXM41 || MNXM99</p> + <p>formula: C6H12O6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c3ec1b4f-c423-4fb7-ba05-e21ba291103b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00031"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00122"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glc__D"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:4167"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/5793"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM41"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM99"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14O7" hasOnlySubstanceUnits="true" id="M_m03165c" initialConcentration="0" metaid="_7fccf573-a7f5-4aeb-823a-e1049fe4b5c1" name="sedoheptulose" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C02076</p> + <p>chebi: CHEBI:16802</p> + <p>metanetx.chemical: MNXM44065</p> + <p>formula: C7H14O7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7fccf573-a7f5-4aeb-823a-e1049fe4b5c1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02076"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16802"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM44065"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2" hasOnlySubstanceUnits="true" id="M_m01285c" initialConcentration="0" metaid="_521f7ad8-f72e-4338-a6f2-c0a842e7122b" name="ADP" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00008</p> + <p>hmdb: HMDB01341</p> + <p>bigg.metabolite: adp</p> + <p>chebi: CHEBI:16761</p> + <p>pubchem.compound: 6022</p> + <p>metanetx.chemical: MNXM7</p> + <p>formula: C10H12N5O10P2</p> + <p>charge: -3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_521f7ad8-f72e-4338-a6f2-c0a842e7122b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00008"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01341"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adp"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16761"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/6022"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3" hasOnlySubstanceUnits="true" id="M_m01981c" initialConcentration="0" metaid="_28c079d9-0897-4cc1-ac53-057881862cfb" name="glyceraldehyde" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C02154</p> + <p>hmdb: HMDB01051</p> + <p>bigg.metabolite: glyald</p> + <p>chebi: CHEBI:5445</p> + <p>inchi: InChI=1S/C3H6O3/c4-1-3(6)2-5/h1,3,5-6H,2H2/t3-/m0/s1</p> + <p>pubchem.compound: 751</p> + <p>metanetx.chemical: MNXM435</p> + <p>formula: C3H6O3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_28c079d9-0897-4cc1-ac53-057881862cfb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02154"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01051"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyald"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:5445"/> + <rdf:li rdf:resource="https://identifiers.org/inchi/InChI=1S/C3H6O3/c4-1-3(6)2-5/h1,3,5-6H,2H2/t3-/m0/s1"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/751"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM435"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O6" hasOnlySubstanceUnits="true" id="M_m01682c" initialConcentration="0" metaid="ae904b43-59ad-4e95-88e1-8e34700a9056" name="D-glucitol" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00794</p> + <p>hmdb: HMDB00247</p> + <p>bigg.metabolite: sbt__D</p> + <p>chebi: CHEBI:17924</p> + <p>pubchem.compound: 5780</p> + <p>metanetx.chemical: MNXM469</p> + <p>formula: C6H14O6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ae904b43-59ad-4e95-88e1-8e34700a9056"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00794"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00247"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sbt__D"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17924"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/5780"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM469"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H13O9P" hasOnlySubstanceUnits="true" id="M_m02917c" initialConcentration="0" metaid="_42c68707-b6eb-4d18-8cc4-456bd62297d4" name="sorbitol-3-phosphate" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>pubchem.compound: 129544</p> + <p>metanetx.chemical: MNXM48480</p> + <p>formula: C6H13O9P</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_42c68707-b6eb-4d18-8cc4-456bd62297d4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/129544"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM48480"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="l" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O" hasOnlySubstanceUnits="true" id="M_m02040l" initialConcentration="0" metaid="eb95a981-8590-48ef-b0b9-b05c3507c687" name="H2O" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>lipidmaps: LMST01040128</p> + <p>kegg.compound: C00001</p> + <p>hmdb: HMDB02111</p> + <p>bigg.metabolite: h2o</p> + <p>chebi: CHEBI:15377</p> + <p>pubchem.compound: 962</p> + <p>metanetx.chemical: MNXM2</p> + <p>formula: H2O</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eb95a981-8590-48ef-b0b9-b05c3507c687"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01040128"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00001"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02111"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15377"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/962"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="r" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N7O14P2" hasOnlySubstanceUnits="true" id="M_m02553r" initialConcentration="0" metaid="a2069c73-802b-49cf-8f06-0e3f0be5669b" name="NADH" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00004</p> + <p>hmdb: HMDB01487</p> + <p>bigg.metabolite: nadh</p> + <p>chebi: CHEBI:16908</p> + <p>pubchem.compound: 928</p> + <p>metanetx.chemical: MNXM10</p> + <p>formula: C21H27N7O14P2</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a2069c73-802b-49cf-8f06-0e3f0be5669b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00004"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01487"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadh"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16908"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/928"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="l" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_m01965l" initialConcentration="0" metaid="_25dd65f2-2228-440c-baf3-9f621a7e5ff0" name="glucose" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00031</p> + <p>hmdb: HMDB00122</p> + <p>bigg.metabolite: glc__D</p> + <p>chebi: CHEBI:4167</p> + <p>pubchem.compound: 5793</p> + <p>metanetx.chemical: MNXM41 || MNXM99</p> + <p>formula: C6H12O6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_25dd65f2-2228-440c-baf3-9f621a7e5ff0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00031"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00122"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glc__D"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:4167"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/5793"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM41"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM99"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="s" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N7O14P2" hasOnlySubstanceUnits="true" id="M_m02553s" initialConcentration="0" metaid="c0b50a6c-29cd-4c06-82af-9fce71d23255" name="NADH" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00004</p> + <p>hmdb: HMDB01487</p> + <p>bigg.metabolite: nadh</p> + <p>chebi: CHEBI:16908</p> + <p>pubchem.compound: 928</p> + <p>metanetx.chemical: MNXM10</p> + <p>formula: C21H27N7O14P2</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c0b50a6c-29cd-4c06-82af-9fce71d23255"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00004"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01487"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadh"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16908"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/928"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="s" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_m01965s" initialConcentration="0" metaid="ad2dbd72-4542-4c0b-8986-e308b158e31f" name="glucose" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00031</p> + <p>hmdb: HMDB00122</p> + <p>bigg.metabolite: glc__D</p> + <p>chebi: CHEBI:4167</p> + <p>pubchem.compound: 5793</p> + <p>metanetx.chemical: MNXM41 || MNXM99</p> + <p>formula: C6H12O6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ad2dbd72-4542-4c0b-8986-e308b158e31f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00031"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00122"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glc__D"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:4167"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/5793"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM41"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM99"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="s" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18O8" hasOnlySubstanceUnits="true" id="M_m01913s" initialConcentration="0" metaid="ae24b707-1474-48c9-bc3e-184c9fc59f80" name="galactosylglycerol" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05401</p> + <p>chebi: CHEBI:15754</p> + <p>pubchem.compound: 16048618</p> + <p>metanetx.chemical: MNXM2608</p> + <p>formula: C9H18O8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ae24b707-1474-48c9-bc3e-184c9fc59f80"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05401"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15754"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/16048618"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM2608"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O" hasOnlySubstanceUnits="true" id="M_m02040c" initialConcentration="0" metaid="dce3ae33-5567-405a-9fd7-b571c4dce0b0" name="H2O" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>lipidmaps: LMST01040128</p> + <p>kegg.compound: C00001</p> + <p>hmdb: HMDB02111</p> + <p>bigg.metabolite: h2o</p> + <p>chebi: CHEBI:15377</p> + <p>pubchem.compound: 962</p> + <p>metanetx.chemical: MNXM2</p> + <p>formula: H2O</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dce3ae33-5567-405a-9fd7-b571c4dce0b0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01040128"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00001"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02111"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15377"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/962"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O11P2" hasOnlySubstanceUnits="true" id="M_m02161c" initialConcentration="0" metaid="_6588a61e-6e8e-4abf-b113-5c7d7bd46a74" name="IDP" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00104</p> + <p>bigg.metabolite: idp</p> + <p>chebi: CHEBI:17808</p> + <p>pubchem.compound: 6831</p> + <p>metanetx.chemical: MNXM495</p> + <p>formula: C10H11N4O11P2</p> + <p>charge: -3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + 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sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01697</p> + <p>hmdb: HMDB00107</p> + <p>bigg.metabolite: galt</p> + <p>chebi: CHEBI:16813</p> + <p>inchi: InChI=1S/C6H14O6/c7-1-3(9)5(11)6(12)4(10)2-8/h3-12H,1-2H2/t3-,4+,5+,6-</p> + <p>pubchem.compound: 11850</p> + <p>metanetx.chemical: MNXM1233</p> + <p>formula: C6H14O6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_32fccb2f-e504-4de0-be7b-32b6e5e909af"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01697"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00107"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galt"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16813"/> + <rdf:li rdf:resource="https://identifiers.org/inchi/InChI=1S/C6H14O6/c7-1-3(9)5(11)6(12)4(10)2-8/h3-12H,1-2H2/t3-,4+,5+,6-"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/11850"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM1233"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_m02454c" initialConcentration="0" metaid="a9ce0266-f645-439d-b18d-d18a8b0913d4" name="mannose-1-phosphate" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00636</p> + <p>hmdb: HMDB06330</p> + <p>bigg.metabolite: man1p</p> + <p>chebi: CHEBI:35374</p> + <p>pubchem.compound: 644175</p> + <p>metanetx.chemical: MNXM721</p> + <p>formula: C6H11O9P</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF 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compartment="c" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O14P3" hasOnlySubstanceUnits="true" id="M_m02034c" initialConcentration="0" metaid="_949f82be-8e6d-4143-98fb-13e8a920d815" name="GTP" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00044</p> + <p>hmdb: HMDB01273</p> + <p>bigg.metabolite: gtp</p> + <p>chebi: CHEBI:15996</p> + <p>pubchem.compound: 6830</p> + <p>metanetx.chemical: MNXM51</p> + <p>formula: C10H12N5O14P3</p> + <p>charge: -4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_949f82be-8e6d-4143-98fb-13e8a920d815"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00044"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01273"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gtp"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15996"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/6830"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_m01911c" initialConcentration="0" metaid="_71807f0a-77fc-4a83-83ec-587af94cb10d" name="galactose-1-phosphate" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C03384</p> + <p>metanetx.chemical: MNXM336</p> + <p>formula: C6H11O9P</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_71807f0a-77fc-4a83-83ec-587af94cb10d"> + <bqbiol:is> + 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hasOnlySubstanceUnits="true" id="M_m01951c" initialConcentration="0" metaid="e11e80c6-cd80-4ea3-96ca-05f1b24ed09b" name="GDP-mannose" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00096</p> + <p>bigg.metabolite: gdpmann</p> + <p>chebi: CHEBI:15820</p> + <p>pubchem.compound: 18396</p> + <p>metanetx.chemical: MNXM82</p> + <p>formula: C16H23N5O16P2</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e11e80c6-cd80-4ea3-96ca-05f1b24ed09b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00096"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gdpmann"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15820"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/18396"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM82"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_m02846c" initialConcentration="0" metaid="f88cd838-6cfd-4de1-80dd-47d8a4a5ec8c" name="ribulose-5-phosphate" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00199</p> + <p>bigg.metabolite: ru5p__D</p> + <p>chebi: CHEBI:17363</p> + <p>pubchem.compound: 439184</p> + <p>metanetx.chemical: MNXM145 || MNXM186</p> + <p>formula: C5H9O8P</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f88cd838-6cfd-4de1-80dd-47d8a4a5ec8c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00199"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ru5p__D"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17363"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/439184"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM145"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM186"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H7O7P" hasOnlySubstanceUnits="true" id="M_m01785c" initialConcentration="0" metaid="_81dee1de-9ff0-4d2b-8f6f-99cf059accdf" name="erythrose-4-phosphate" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00279</p> + <p>bigg.metabolite: e4p</p> + <p>chebi: CHEBI:48153</p> + <p>pubchem.compound: 122357</p> + 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xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01801</p> + <p>hmdb: HMDB03224</p> + <p>bigg.metabolite: drib</p> + <p>chebi: CHEBI:28816</p> + <p>pubchem.compound: 22833604</p> + <p>metanetx.chemical: MNXM90412 || MNXM2474</p> + <p>formula: C5H10O4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c684250e-c857-4d7b-b61e-1695a0a407a8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01801"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB03224"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/drib"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28816"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/22833604"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM90412"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM2474"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="r" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H26N7O17P3" hasOnlySubstanceUnits="true" id="M_m02555r" initialConcentration="0" metaid="_9dd9e24d-3d87-43d4-a57f-7319fda9d5ae" name="NADPH" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00005</p> + <p>hmdb: HMDB00221</p> + <p>bigg.metabolite: nadph</p> + <p>chebi: CHEBI:16474</p> + <p>pubchem.compound: 22833512</p> + <p>metanetx.chemical: MNXM6</p> + <p>formula: C21H26N7O17P3</p> + <p>charge: -4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9dd9e24d-3d87-43d4-a57f-7319fda9d5ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00005"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00221"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadph"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16474"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/22833512"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="s" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O3" hasOnlySubstanceUnits="true" id="M_m01983s" initialConcentration="0" metaid="_681859d4-f24a-406f-8efe-f13934d5ffd5" name="glycerol" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00116</p> + <p>hmdb: HMDB00131</p> + <p>bigg.metabolite: glyc</p> + <p>chebi: CHEBI:17522</p> + <p>pubchem.compound: 753</p> + 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id="M_m02554c" initialConcentration="0" metaid="_9d6ff91d-ad3d-4e8d-9c4a-fce47e8acd53" name="NADP+" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00006</p> + <p>hmdb: HMDB00217</p> + <p>bigg.metabolite: nadp</p> + <p>chebi: CHEBI:18009</p> + <p>pubchem.compound: 5886</p> + <p>metanetx.chemical: MNXM5</p> + <p>formula: C21H25N7O17P3</p> + <p>charge: -3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9d6ff91d-ad3d-4e8d-9c4a-fce47e8acd53"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00006"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00217"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadp"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18009"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/5886"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H12O5" hasOnlySubstanceUnits="true" id="M_m02841c" initialConcentration="0" metaid="eb784776-6b61-4d67-9441-2af7f5d1e57f" name="ribitol" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00474</p> + <p>hmdb: HMDB00508</p> + <p>bigg.metabolite: rbt</p> + <p>chebi: CHEBI:15963</p> + <p>pubchem.compound: 827</p> + <p>metanetx.chemical: MNXM1820</p> + <p>formula: C5H12O5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eb784776-6b61-4d67-9441-2af7f5d1e57f"> + 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fbc:chemicalFormula="H2O" hasOnlySubstanceUnits="true" id="M_m02040s" initialConcentration="0" metaid="edc2812f-d50e-40df-9c9b-c62283dd5dfa" name="H2O" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>lipidmaps: LMST01040128</p> + <p>kegg.compound: C00001</p> + <p>hmdb: HMDB02111</p> + <p>bigg.metabolite: h2o</p> + <p>chebi: CHEBI:15377</p> + <p>pubchem.compound: 962</p> + <p>metanetx.chemical: MNXM2</p> + <p>formula: H2O</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#edc2812f-d50e-40df-9c9b-c62283dd5dfa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01040128"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00001"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02111"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15377"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/962"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H11N2O15P3" hasOnlySubstanceUnits="true" id="M_m03130c" initialConcentration="0" metaid="_623bdee5-7e3f-429d-8798-39cae174c79d" name="UTP" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00075</p> + <p>hmdb: HMDB00285</p> + <p>bigg.metabolite: utp</p> + <p>chebi: CHEBI:15713</p> + <p>pubchem.compound: 6133</p> + <p>metanetx.chemical: MNXM121</p> + <p>formula: C9H11N2O15P3</p> + <p>charge: -4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_623bdee5-7e3f-429d-8798-39cae174c79d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00075"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00285"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/utp"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15713"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/6133"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM121"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H13O10P" hasOnlySubstanceUnits="true" id="M_m03166c" initialConcentration="0" metaid="be62933b-1dd6-4a8b-87c9-a14eb36e9b49" name="sedoheptulose-1-phosphate" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C06222</p> + <p>chebi: CHEBI:9082</p> + <p>metanetx.chemical: MNXM12925</p> + <p>formula: C7H13O10P</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#be62933b-1dd6-4a8b-87c9-a14eb36e9b49"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C06222"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:9082"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM12925"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7" hasOnlySubstanceUnits="true" id="M_m01683c" initialConcentration="0" metaid="_7e64183c-bff4-44e2-bdb9-41d69f6bed98" name="D-gluconic acid" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00257</p> + <p>hmdb: HMDB00625</p> + <p>chebi: CHEBI:33198</p> + <p>pubchem.compound: 10690</p> + <p>metanetx.chemical: MNXM341</p> + <p>formula: C6H11O7</p> + <p>charge: -1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7e64183c-bff4-44e2-bdb9-41d69f6bed98"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00257"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00625"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:33198"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/10690"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM341"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="r" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O" hasOnlySubstanceUnits="true" id="M_m02040r" initialConcentration="0" metaid="e3ae9f2d-61b6-4fc2-b932-c251c833a03e" name="H2O" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>lipidmaps: LMST01040128</p> + <p>kegg.compound: C00001</p> + <p>hmdb: HMDB02111</p> + <p>bigg.metabolite: h2o</p> + <p>chebi: CHEBI:15377</p> + <p>pubchem.compound: 962</p> + <p>metanetx.chemical: MNXM2</p> + <p>formula: H2O</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e3ae9f2d-61b6-4fc2-b932-c251c833a03e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01040128"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00001"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02111"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15377"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/962"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="r" constant="false" fbc:charge="-3" fbc:chemicalFormula="C21H25N7O17P3" hasOnlySubstanceUnits="true" id="M_m02554r" initialConcentration="0" metaid="_2dffc121-cbfa-4ef2-bf72-85b96310b284" name="NADP+" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00006</p> + <p>hmdb: HMDB00217</p> + <p>bigg.metabolite: nadp</p> + <p>chebi: CHEBI:18009</p> + <p>pubchem.compound: 5886</p> + <p>metanetx.chemical: MNXM5</p> + <p>formula: C21H25N7O17P3</p> + <p>charge: -3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2dffc121-cbfa-4ef2-bf72-85b96310b284"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00006"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00217"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadp"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18009"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/5886"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O7P" hasOnlySubstanceUnits="true" id="M_m00640c" initialConcentration="0" metaid="_646e6e22-6191-458f-b8cb-359247dfbf5f" name="2-deoxy-D-ribose-5-phosphate" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00673</p> + <p>bigg.metabolite: 2dr5p</p> + <p>chebi: CHEBI:16132</p> + <p>pubchem.compound: 45934311</p> + <p>metanetx.chemical: MNXM2179</p> + <p>formula: C5H9O7P</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_646e6e22-6191-458f-b8cb-359247dfbf5f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00673"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2dr5p"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16132"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/45934311"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM2179"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + </listOfSpecies> + <listOfParameters> + <parameter constant="true" id="UPPER_BOUND_1000_0" units="mmol_per_gDW_per_hr" value="1000"/> + <parameter constant="true" id="LOWER_BOUND_1000_0" units="mmol_per_gDW_per_hr" value="-1000"/> + <parameter constant="true" id="LOWER_BOUND_0_0" units="mmol_per_gDW_per_hr" value="0"/> + </listOfParameters> + <listOfReactions> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4831" metaid="a3b700c3-d335-4df3-bb92-f8fc04db5f3d" name="R_HMR_4831" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 1.1.99.13</p> + <p>metanetx.reaction: MNXR107115</p> + <p>kegg.reaction: R01680</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 1.1.99.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a3b700c3-d335-4df3-bb92-f8fc04db5f3d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.99.13"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR107115"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01680"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <listOfReactants> + <speciesReference constant="true" species="M_m02552s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02332s" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02553s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m00812s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039s" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4710" metaid="e6a0e367-66fa-4310-a86d-7dde3669eac3" name="R_HMR_4710" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:3023765</p> + <p>ec-code: 5.4.2.7</p> + <p>metanetx.reaction: MNXR103116</p> + <p>kegg.reaction: R02749</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 5.4.2.7</p> + <p>pmids: 3023765</p> + <p>GENE_ASSOCIATION: ( ENSG00000169299 ) OR ( ENSG00000180953 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e6a0e367-66fa-4310-a86d-7dde3669eac3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.2.7"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103116"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R02749"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3023765"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000169299"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000180953"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m00639c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m00640c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4832" metaid="_0a972dea-1cbc-4140-9dc6-ed7934752c06" name="R_HMR_4832" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:3109378;UNIPROT:P16278</p> + <p>ec-code: 3.2.1.23</p> + <p>metanetx.reaction: MNXR109113 || MNXR105374</p> + <p>kegg.reaction: R04783</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 3.2.1.23</p> + <p>pmids: 3109378</p> + <p>GENE_ASSOCIATION: ENSG00000115850 AND ENSG00000163521 AND ENSG00000170266 AND ENSG00000188167</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0a972dea-1cbc-4140-9dc6-ed7934752c06"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.23"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR109113"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105374"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R04783"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3109378"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="ENSG00000170266"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000163521"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000188167"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000115850"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m00810s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01965s" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02040s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m00812s" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4315" metaid="_47e92709-8d94-4b33-a876-2890e1758a66" name="R_HMR_4315" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 1.1.1.14</p> + <p>metanetx.reaction: MNXR104283</p> + <p>kegg.reaction: R00875</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 1.1.1.14</p> + <p>GENE_ASSOCIATION: ENSG00000140263</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_47e92709-8d94-4b33-a876-2890e1758a66"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.14"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104283"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00875"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000140263"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02552c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01682c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01840c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02553c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4316" metaid="dc10854d-832c-4e85-a025-26973915eb3c" name="R_HMR_4316" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 1.1.1.21</p> + <p>metanetx.reaction: MNXR104287</p> + <p>kegg.reaction: R01787</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 1.1.1.21</p> + <p>GENE_ASSOCIATION: ( ENSG00000085662 ) OR ( ENSG00000198074 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dc10854d-832c-4e85-a025-26973915eb3c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.21"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104287"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01787"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000198074"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000085662"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02554c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01682c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01965c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02555c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4317" metaid="_36d1db72-1f57-4631-aff2-71a5a6395889" name="R_HMR_4317" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:2211634</p> + <p>ec-code: 2.7.1.-</p> + <p>metanetx.reaction: MNXR103725</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.1.-</p> + <p>pmids: 2211634</p> + <p>GENE_ASSOCIATION: ( ENSG00000116199 ) OR ( ENSG00000141560 ) OR ( ENSG00000162408 ) OR ( ENSG00000167363 ) OR ( ENSG00000172456 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_36d1db72-1f57-4631-aff2-71a5a6395889"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.-"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103725"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2211634"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000116199"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000141560"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000162408"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000172456"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000167363"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01682c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02917c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4318" metaid="_008e8008-7d8f-4404-bca8-d5c7e6a2b321" name="R_HMR_4318" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 2.7.1.-</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.1.-</p> + <p>GENE_ASSOCIATION: ( ENSG00000116199 ) OR ( ENSG00000141560 ) OR ( ENSG00000162408 ) OR ( ENSG00000167363 ) OR ( ENSG00000172456 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_008e8008-7d8f-4404-bca8-d5c7e6a2b321"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.-"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000116199"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000141560"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000162408"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000172456"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000167363"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01840c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01844c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_3944" metaid="e3f7be38-4458-4c4b-9e00-ba70676d46ba" name="R_HMR_3944" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:223665;PMID:4433565;PMID:4436332;PMID:6318818;PMID:6320876;PMID:8612650</p> + <p>ec-code: 2.7.7.9</p> + <p>metanetx.reaction: MNXR100022</p> + <p>kegg.reaction: R00289</p> + <p>bigg.reaction: GALUi</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.7.7.9</p> + <p>pmids: 223665,4433565,4436332,6318818,6320876,8612650</p> + <p>GENE_ASSOCIATION: ENSG00000169764</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e3f7be38-4458-4c4b-9e00-ba70676d46ba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.9"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100022"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00289"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALUi"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/223665"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6318818"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/8612650"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6320876"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4433565"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4436332"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000169764"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m03130c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01967c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m03108c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02759c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4319" metaid="_45d0d167-05cb-4738-8b64-49f3791a4688" name="R_HMR_4319" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:16906315;PMID:7061426;PMID:7150652;PMID:8717435</p> + <p>ec-code: 2.7.1.1</p> + <p>metanetx.reaction: MNXR100614</p> + <p>kegg.reaction: R00760</p> + <p>bigg.reaction: HEX7</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.1.1</p> + <p>pmids: 7061426,7150652,8717435,16906315</p> + <p>GENE_ASSOCIATION: ( ENSG00000156510 ) OR ( ENSG00000156515 ) OR ( ENSG00000159399 ) OR ( ENSG00000160883 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_45d0d167-05cb-4738-8b64-49f3791a4688"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.1"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100614"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00760"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEX7"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7150652"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7061426"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/16906315"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/8717435"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000159399"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000160883"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000156510"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000156515"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01840c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01845c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_RPEc" metaid="_060005cd-e77c-4aec-9a9e-9953a24e631e" name="Ribulose 5-Phosphate 3-Epimerase" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID: 4382012, PMID: 13575411, Harpers illustrated Biochemistry (2009) 28th edition pages 174-183</p> + <p>ec-code: 5.1.3.1</p> + <p>bigg.reaction: RPEc</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 5.1.3.1</p> + <p>pmids: 4382012,13575411</p> + <p>GENE_ASSOCIATION: ENSG00000197713</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_060005cd-e77c-4aec-9a9e-9953a24e631e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.3.1"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RPEc"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/13575411"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4382012"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000197713"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02846c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01761c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_GLYPHEHYc" metaid="_841ed12c-3095-4d2d-88c0-b2d51dc181bc" name="Hydrolysis of Glycylphenylalanine" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: most probable reaction. added during gap filling.</p> + <p>metanetx.reaction: MNXR100357</p> + <p>bigg.reaction: GLYPHEHYc</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_841ed12c-3095-4d2d-88c0-b2d51dc181bc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100357"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYPHEHYc"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <listOfReactants> + <speciesReference constant="true" species="M_glyphe_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02040c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02724c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01986c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_8762" metaid="b7a3dbfa-eb0f-42d0-890e-a21c45957a2f" name="R_HMR_8762" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 4.1.2.13</p> + <p>metanetx.reaction: MNXR99466</p> + <p>bigg.reaction: FBP26</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 4.1.2.13</p> + <p>GENE_ASSOCIATION: ( ENSG00000109107 ) OR ( ENSG00000136872 ) OR ( ENSG00000149925 ) OR ( ENSG00000285043 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b7a3dbfa-eb0f-42d0-890e-a21c45957a2f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.13"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99466"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FBP26"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000136872"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000149925"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000109107"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000285043"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01746c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01690c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01981c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_7674" metaid="_3217a74c-f7b4-467b-a857-58e20a23c963" name="R_HMR_7674" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 2.4.1.22</p> + <p>metanetx.reaction: MNXR105080</p> + <p>kegg.reaction: R00503</p> + <p>bigg.reaction: UGALGTg</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.4.1.22</p> + <p>GENE_ASSOCIATION: ( ENSG00000086062 ) OR ( ENSG00000117411 ) OR ( ENSG00000167531 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3217a74c-f7b4-467b-a857-58e20a23c963"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.22"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105080"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00503"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UGALGTg"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000167531"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000086062"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000117411"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01965g" stoichiometry="1"/> + <speciesReference constant="true" species="M_m03107g" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02039g" stoichiometry="1"/> + <speciesReference constant="true" species="M_m03106g" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02332g" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_8761" metaid="_9b5f5c01-dd04-4b3e-a91e-008503d581a0" name="R_HMR_8761" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 2.7.1.3</p> + <p>metanetx.reaction: MNXR100938</p> + <p>kegg.reaction: R02927</p> + <p>bigg.reaction: KHK3</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.7.1.3</p> + <p>GENE_ASSOCIATION: ENSG00000138030</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9b5f5c01-dd04-4b3e-a91e-008503d581a0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.3"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100938"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R02927"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/KHK3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000138030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01745c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01746c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4320" metaid="a8abfc18-6328-4a50-8b08-d17a3f28c8b2" name="R_HMR_4320" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:10085245</p> + <p>ec-code: 2.7.1.-</p> + <p>metanetx.reaction: MNXR103514</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.1.-</p> + <p>pmids: 10085245</p> + <p>GENE_ASSOCIATION: ( ENSG00000116199 ) OR ( ENSG00000141560 ) OR ( ENSG00000162408 ) OR ( ENSG00000167363 ) OR ( ENSG00000172456 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a8abfc18-6328-4a50-8b08-d17a3f28c8b2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.-"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103514"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/10085245"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000116199"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000141560"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000162408"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000172456"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000167363"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02454c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01717c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_8766" metaid="_67a27b12-ccf1-4623-a972-3aff79c6f80d" name="R_HMR_8766" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 1.1.1.21</p> + <p>metanetx.reaction: MNXR100012</p> + <p>kegg.reaction: R01095</p> + <p>bigg.reaction: GALSIDEtl</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 1.1.1.21</p> + <p>GENE_ASSOCIATION: ( ENSG00000085662 ) OR ( ENSG00000198074 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_67a27b12-ccf1-4623-a972-3aff79c6f80d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.21"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100012"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01095"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALSIDEtl"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000198074"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000085662"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01910c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02555c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02554c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01909c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_8767" metaid="_8b416bb5-ba06-4ea8-a781-6758242e28a2" name="R_HMR_8767" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 2.7.7.12</p> + <p>metanetx.reaction: MNXR100027</p> + <p>kegg.reaction: R00502</p> + <p>bigg.reaction: GALt2_2</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.7.7.12</p> + <p>GENE_ASSOCIATION: ENSG00000213930</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8b416bb5-ba06-4ea8-a781-6758242e28a2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.12"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100027"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00502"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALt2_2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000213930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m03130c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01322c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02759c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m03107c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_8764" metaid="_4a18991c-afe6-4ab4-9518-7eea4183c3a8" name="R_HMR_8764" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 3.2.1.108</p> + <p>metanetx.reaction: MNXR101000</p> + <p>kegg.reaction: R06114</p> + <p>bigg.reaction: LACZly</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 3.2.1.108</p> + <p>GENE_ASSOCIATION: ENSG00000115850</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4a18991c-afe6-4ab4-9518-7eea4183c3a8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.108"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR101000"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R06114"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LACZly"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000115850"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02040l" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02332l" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01910l" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01965l" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4400" metaid="_24e2c246-dc4f-43cb-b817-8363e45ca0f0" name="R_HMR_4400" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:10410995;PMID:2428310;PMID:9603974</p> + <p>ec-code: 1.1.1.271</p> + <p>metanetx.reaction: MNXR100108 || MNXR105384</p> + <p>kegg.reaction: R05692</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 1.1.1.271</p> + <p>pmids: 2428310,9603974,10410995</p> + <p>GENE_ASSOCIATION: ENSG00000104522</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_24e2c246-dc4f-43cb-b817-8363e45ca0f0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.271"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100108"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105384"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R05692"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2428310"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/9603974"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/10410995"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000104522"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01949c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02553c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02552c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01950c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4565" metaid="dc55ec50-f182-42db-834f-d0cf1b380879" name="R_HMR_4565" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:8549825;UNIPROT:P37837</p> + <p>ec-code: 2.2.1.2</p> + <p>metanetx.reaction: MNXR104715</p> + <p>kegg.reaction: R08575</p> + <p>bigg.reaction: TALA</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.2.1.2</p> + <p>pmids: 8549825</p> + <p>GENE_ASSOCIATION: ENSG00000177156</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dc55ec50-f182-42db-834f-d0cf1b380879"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.2.1.2"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104715"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R08575"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TALA"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/8549825"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000177156"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01939c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02884c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01785c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01845c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4841" metaid="f74d8639-e4ff-4f06-b6de-2c4de6cff989" name="R_HMR_4841" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:15234337</p> + <p>ec-code: 1.2.1.5</p> + <p>metanetx.reaction: MNXR105388</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 1.2.1.5</p> + <p>pmids: 15234337</p> + <p>GENE_ASSOCIATION: ( ENSG00000006534 ) OR ( ENSG00000108602 ) OR ( ENSG00000132746 ) OR ( ENSG00000184254 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f74d8639-e4ff-4f06-b6de-2c4de6cff989"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105388"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15234337"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000108602"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000132746"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000184254"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000006534"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02553c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02843c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02552c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02841c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4401" metaid="_784dbb17-65c3-4806-8d58-6101b6f50cb1" name="R_HMR_4401" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:5646162;PMID:6251080</p> + <p>ec-code: 2.7.7.30</p> + <p>metanetx.reaction: MNXR99061</p> + <p>kegg.reaction: R01951</p> + <p>bigg.reaction: F1PGT</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.7.30</p> + <p>pmids: 5646162,6251080</p> + <p>GENE_ASSOCIATION: ( ENSG00000116783 ) OR ( ENSG00000254685 ) OR ( ENSG00000259030 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_784dbb17-65c3-4806-8d58-6101b6f50cb1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.30"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99061"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01951"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/F1PGT"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/5646162"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6251080"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000116783"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000254685"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000259030"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01950c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02759c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02034c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02372c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_RE1342C" metaid="_35970be8-355d-4991-bcbd-bf773e56c260" name="Aldehyde Reductase" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:9537432</p> + <p>ec-code: 1.1.1.21</p> + <p>metanetx.reaction: MNXR103511</p> + <p>bigg.reaction: RE1342C</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 1.1.1.21</p> + <p>pmids: 9537432</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_35970be8-355d-4991-bcbd-bf773e56c260"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.21"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103511"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE1342C"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/9537432"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <listOfReactants> + <speciesReference constant="true" species="M_m02552c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01682c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02553c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01965c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4402" metaid="f3a0a958-fed9-477e-ae39-8cdedad1f5bc" name="R_HMR_4402" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:12056818;PMID:12413479</p> + <p>ec-code: 2.7.1.52</p> + <p>metanetx.reaction: MNXR99595 || MNXR107992</p> + <p>kegg.reaction: R03161</p> + <p>bigg.reaction: FK</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.1.52</p> + <p>pmids: 12056818,12413479</p> + <p>GENE_ASSOCIATION: ENSG00000157353</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f3a0a958-fed9-477e-ae39-8cdedad1f5bc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.52"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99595"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR107992"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R03161"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FK"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/12056818"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/12413479"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000157353"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01159c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02372c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4567" metaid="_9ff90316-748a-4f8a-91f7-86e61fbd681e" name="R_HMR_4567" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:4084320;PMID:4272358</p> + <p>ec-code: 2.7.1.11</p> + <p>metanetx.reaction: MNXR105338 || MNXR102510</p> + <p>kegg.reaction: R01843</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.7.1.11</p> + <p>pmids: 4084320,4272358</p> + <p>GENE_ASSOCIATION: ( ENSG00000067057 ) OR ( ENSG00000141959 ) OR ( ENSG00000152556 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9ff90316-748a-4f8a-91f7-86e61fbd681e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.11"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105338"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR102510"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01843"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4272358"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4084320"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000067057"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000141959"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000152556"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02883c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02884c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4403" metaid="_41178734-fe7b-47f2-b84a-e69e20728adb" name="R_HMR_4403" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:457669;PMID:5050937</p> + <p>ec-code: 5.3.1.25</p> + <p>metanetx.reaction: MNXR99468 || MNXR107994</p> + <p>kegg.reaction: R03163</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 5.3.1.25</p> + <p>pmids: 457669,5050937</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_41178734-fe7b-47f2-b84a-e69e20728adb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.25"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99468"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR107994"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R03163"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/457669"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/5050937"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <listOfReactants> + <speciesReference constant="true" species="M_m01159c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02373c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4568" metaid="_414cb744-0f0d-4837-b547-ca5fc7b2529a" name="R_HMR_4568" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:11945275</p> + <p>ec-code: 2.7.1.11</p> + <p>metanetx.reaction: MNXR105339</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.7.1.11</p> + <p>pmids: 11945275</p> + <p>GENE_ASSOCIATION: ( ENSG00000067057 ) OR ( ENSG00000141959 ) OR ( ENSG00000152556 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_414cb744-0f0d-4837-b547-ca5fc7b2529a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.11"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105339"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/11945275"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000067057"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000141959"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000152556"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m03106c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02883c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m03130c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02884c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4128" metaid="_093ee677-4ba5-4528-856e-60f371fedfe8" name="R_HMR_4128" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:191453;PMID:845161</p> + <p>ec-code: 5.1.3.2</p> + <p>metanetx.reaction: MNXR105057</p> + <p>kegg.reaction: R00291</p> + <p>bigg.reaction: UDPG4E</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 5.1.3.2</p> + <p>pmids: 191453,845161</p> + <p>GENE_ASSOCIATION: ENSG00000117308</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_093ee677-4ba5-4528-856e-60f371fedfe8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.3.2"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105057"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00291"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UDPG4E"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/845161"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/191453"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000117308"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m03107c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m03108c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_8768" metaid="_8bcb4fd6-2dbe-4ec7-a1ff-10766373c9c1" name="R_HMR_8768" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 1.1.1.271</p> + <p>metanetx.reaction: MNXR100108</p> + <p>kegg.reaction: R05692</p> + <p>bigg.reaction: GFUCS</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 1.1.1.271</p> + <p>GENE_ASSOCIATION: ENSG00000104522</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8bcb4fd6-2dbe-4ec7-a1ff-10766373c9c1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.271"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100108"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R05692"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GFUCS"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000104522"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01949c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02555c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01950c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02554c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4404" metaid="_53153327-0fb7-4573-bd62-024a6dbd9d90" name="R_HMR_4404" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:234468;PMID:2495942;PMID:2843500;PMID:3089282;PMID:5141430;PMID:7115375;PMID:7154948;PMID:9924800</p> + <p>ec-code: 2.2.1.1</p> + <p>metanetx.reaction: MNXR104869 || MNXR106812</p> + <p>kegg.reaction: R01067</p> + <p>bigg.reaction: TKT2</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.2.1.1</p> + <p>pmids: 234468,2495942,2843500,3089282,5141430,7115375,7154948,9924800</p> + <p>GENE_ASSOCIATION: ( ENSG00000007350 ) OR ( ENSG00000151005 ) OR ( ENSG00000163931 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_53153327-0fb7-4573-bd62-024a6dbd9d90"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.2.1.1"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104869"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106812"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01067"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TKT2"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2495942"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7115375"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/234468"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2843500"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/9924800"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/5141430"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7154948"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3089282"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000163931"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000007350"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000151005"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01761c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01785c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01939c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01845c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4490" metaid="f0088831-0d71-400f-b3b3-78d25c47e1f4" name="R_HMR_4490" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:16906315;PMID:7061426;PMID:7150652;PMID:8717435</p> + <p>ec-code: 2.7.1.1</p> + <p>metanetx.reaction: MNXR95795</p> + <p>kegg.reaction: R01326</p> + <p>bigg.reaction: HEX4</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.1.1</p> + <p>pmids: 7061426,7150652,8717435,16906315</p> + <p>GENE_ASSOCIATION: ( ENSG00000156510 ) OR ( ENSG00000156515 ) OR ( ENSG00000159399 ) OR ( ENSG00000160883 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f0088831-0d71-400f-b3b3-78d25c47e1f4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.1"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR95795"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01326"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEX4"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7150652"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7061426"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/16906315"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/8717435"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000159399"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000160883"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000156510"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000156515"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02453c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02455c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4052" metaid="f3773fb2-a697-4ad0-b9c8-70f626e44da0" name="R_HMR_4052" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:11101685;PMID:7572345</p> + <p>ec-code: 2.7.6.1</p> + <p>metanetx.reaction: MNXR106802 || MNXR103215</p> + <p>kegg.reaction: R01049</p> + <p>bigg.reaction: PRPPS</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.7.6.1</p> + <p>pmids: 7572345,11101685</p> + <p>GENE_ASSOCIATION: ( ENSG00000101911 ) OR ( ENSG00000147224 ) OR ( ENSG00000229937 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f3773fb2-a697-4ad0-b9c8-70f626e44da0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.6.1"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106802"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103215"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01049"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PRPPS"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7572345"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/11101685"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000147224"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000229937"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000101911"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02845c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01334c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02806c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4130" metaid="a1e6f11c-2c01-45d7-aa41-39764568a681" name="R_HMR_4130" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 2.7.1.6</p> + <p>metanetx.reaction: MNXR99985</p> + <p>bigg.reaction: GALKr</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.7.1.6</p> + <p>GENE_ASSOCIATION: ( ENSG00000108479 ) OR ( ENSG00000156958 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a1e6f11c-2c01-45d7-aa41-39764568a681"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.6"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99985"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALKr"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000108479"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000156958"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01910c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01322c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_8653" metaid="_22f2d06f-d7c0-4287-a929-46293b17c7af" name="R_HMR_8653" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 3.1.1.31</p> + <p>metanetx.reaction: MNXR99907</p> + <p>kegg.reaction: R10520</p> + <p>bigg.reaction: G6PDH2r</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 3.1.1.31</p> + <p>GENE_ASSOCIATION: ( ENSG00000049239 ) OR ( ENSG00000130313 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_22f2d06f-d7c0-4287-a929-46293b17c7af"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.31"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99907"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R10520"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G6PDH2r"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000049239"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000130313"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01961r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02553r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039r" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01968r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02552r" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4131" metaid="fba7f9cd-fa2b-4c7a-a4a5-02318cc57a68" name="R_HMR_4131" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 2.7.7.12</p> + <p>metanetx.reaction: MNXR105090</p> + <p>kegg.reaction: R00955</p> + <p>bigg.reaction: UGLT</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.7.7.12</p> + <p>GENE_ASSOCIATION: ENSG00000213930</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fba7f9cd-fa2b-4c7a-a4a5-02318cc57a68"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.12"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105090"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00955"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UGLT"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000213930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m03107c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01967c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m03108c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01322c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4297" metaid="c5cf5503-7811-4ea5-b3d5-159879fdbf6a" name="R_HMR_4297" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:7506254;PMID:7688733</p> + <p>ec-code: 2.7.1.105</p> + <p>metanetx.reaction: MNXR102508</p> + <p>kegg.reaction: R00757</p> + <p>bigg.reaction: PFK26</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.1.105</p> + <p>pmids: 7506254,7688733</p> + <p>GENE_ASSOCIATION: ( ENSG00000114268 ) OR ( ENSG00000123836 ) OR ( ENSG00000158571 ) OR ( ENSG00000170525 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c5cf5503-7811-4ea5-b3d5-159879fdbf6a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.105"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR102508"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00757"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PFK26"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7688733"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7506254"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000123836"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000170525"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000114268"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000158571"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01845c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01843c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4132" metaid="_7fd1e0ad-5113-42aa-963e-6215ef481843" name="R_HMR_4132" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:10993714</p> + <p>ec-code: 2.7.7.12</p> + <p>metanetx.reaction: MNXR105090</p> + <p>kegg.reaction: R00955</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.7.7.12</p> + <p>pmids: 10993714</p> + <p>GENE_ASSOCIATION: ENSG00000213930</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7fd1e0ad-5113-42aa-963e-6215ef481843"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.12"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105090"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00955"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/10993714"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000213930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01911c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m03108c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m03107c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01967c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_0454" metaid="c76ba226-384c-4b57-84b2-6140f038c756" name="R_HMR_0454" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:12125098</p> + <p>ec-code: 2.7.1.28</p> + <p>metanetx.reaction: MNXR104940</p> + <p>kegg.reaction: R01059</p> + <p>bigg.reaction: TRIOK</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.1.28</p> + <p>pmids: 12125098</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c76ba226-384c-4b57-84b2-6140f038c756"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.28"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104940"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01059"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRIOK"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/12125098"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01981c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01939c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4774" metaid="_3d04496d-3c88-44ef-a0f4-1566551ef2a7" name="R_HMR_4774" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:131802;PMID:1810251;PMID:193556;PMID:2987258;PMID:6091737</p> + <p>ec-code: 2.7.1.11</p> + <p>metanetx.reaction: MNXR108039 || MNXR105355</p> + <p>kegg.reaction: R03237</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.7.1.11</p> + <p>pmids: 131802,193556,1810251,2987258,6091737</p> + <p>GENE_ASSOCIATION: ( ENSG00000067057 ) OR ( ENSG00000141959 ) OR ( ENSG00000152556 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d04496d-3c88-44ef-a0f4-1566551ef2a7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.11"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR108039"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105355"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R03237"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/1810251"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6091737"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/193556"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2987258"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/131802"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000067057"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000141959"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000152556"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01424c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02955c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01623c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01746c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4775" metaid="b71ca27b-2233-4904-bf68-12c5c97c9300" name="R_HMR_4775" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:131802;PMID:1810251</p> + <p>ec-code: 2.7.1.11</p> + <p>metanetx.reaction: MNXR105356 || MNXR108041</p> + <p>kegg.reaction: R03239</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.7.1.11</p> + <p>pmids: 131802,1810251</p> + <p>GENE_ASSOCIATION: ( ENSG00000067057 ) OR ( ENSG00000141959 ) OR ( ENSG00000152556 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b71ca27b-2233-4904-bf68-12c5c97c9300"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.11"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105356"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR108041"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R03239"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/1810251"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/131802"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000067057"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000141959"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000152556"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02193c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01746c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02161c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02955c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4414" metaid="b4722a38-261b-454e-93b5-c84c4aa10035" name="R_HMR_4414" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:8908517</p> + <p>ec-code: 2.7.1.6</p> + <p>metanetx.reaction: MNXR99985</p> + <p>kegg.reaction: R01092</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.7.1.6</p> + <p>pmids: 8908517</p> + <p>GENE_ASSOCIATION: ( ENSG00000108479 ) OR ( ENSG00000156958 ) OR ( ENSG00000166262 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b4722a38-261b-454e-93b5-c84c4aa10035"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.6"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99985"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01092"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/8908517"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000108479"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000156958"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000166262"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01910c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01911c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4415" metaid="_0e1118fe-ec5c-4f40-b7ba-0a043f91a0d0" name="R_HMR_4415" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:6786877</p> + <p>ec-code: 3.2.1.108 || 3.2.1.23</p> + <p>metanetx.reaction: MNXR101000</p> + <p>kegg.reaction: R01100</p> + <p>bigg.reaction: LACZe</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 3.2.1.23;3.2.1.108</p> + <p>pmids: 6786877</p> + <p>GENE_ASSOCIATION: ENSG00000115850 AND ENSG00000163521 AND ENSG00000170266 AND ENSG00000188167</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0e1118fe-ec5c-4f40-b7ba-0a043f91a0d0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.108"/> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.23"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR101000"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01100"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LACZe"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6786877"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="ENSG00000170266"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000163521"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000188167"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000115850"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02040s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02332s" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01910s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01965s" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4416" metaid="b1a0bbd3-03c8-481d-87b1-808aebb90ef2" name="R_HMR_4416" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:3569296</p> + <p>ec-code: 3.2.1.23 || 3.2.1.22</p> + <p>metanetx.reaction: MNXR100115</p> + <p>kegg.reaction: R01104</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 3.2.1.22;3.2.1.23</p> + <p>pmids: 3569296</p> + <p>GENE_ASSOCIATION: ( ENSG00000102393 ) OR ( ENSG00000170266 ) OR ( ENSG00000241343 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b1a0bbd3-03c8-481d-87b1-808aebb90ef2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.23"/> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.22"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100115"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01104"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3569296"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000102393"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000170266"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000241343"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02040s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01913s" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01910s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01983s" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_FBA5" metaid="f429561f-98d2-434a-860a-ddff29f21ebd" name="D-Tagatose 1-Phosphate D-Glyceraldehyde-3-Phosphate-Lyase" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:2996495,PMID:6284103,PMID:6298387</p> + <p>ec-code: 4.1.2.13</p> + <p>metanetx.reaction: MNXR99463</p> + <p>bigg.reaction: FBA5</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 4.1.2.13</p> + <p>pmids: 2996495,6284103,6298387</p> + <p>GENE_ASSOCIATION: ENSG00000136872</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f429561f-98d2-434a-860a-ddff29f21ebd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.13"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99463"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FBA5"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2996495"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6298387"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6284103"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000136872"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tag1p_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01690c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01981c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_PGLc" metaid="_3648fd3f-6668-495c-b2e0-e7ce9105a0bd" name="6-Phosphogluconolactonase" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID: 4382012, PMID: 13575411, Harpers illustrated Biochemistry (2009) 28th edition pages 174-183</p> + <p>ec-code: 3.1.1.31</p> + <p>bigg.reaction: PGLc</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 3.1.1.31</p> + <p>pmids: 4382012,13575411</p> + <p>GENE_ASSOCIATION: ENSG00000130313</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3648fd3f-6668-495c-b2e0-e7ce9105a0bd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.31"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PGLc"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/13575411"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4382012"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000130313"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02040c" stoichiometry="3"/> + <speciesReference constant="true" species="M_m01961c" stoichiometry="3"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01169c" stoichiometry="3"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="3"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4383" metaid="_0ea26d9f-b8bd-4193-8626-31efb5856906" name="R_HMR_4383" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:10571009;PMID:12231825;PMID:15033941;PMID:2085314;PMID:7702210;PMID:8381960</p> + <p>ec-code: 5.3.1.8</p> + <p>metanetx.reaction: MNXR106679 || MNXR101382</p> + <p>kegg.reaction: R00772</p> + <p>bigg.reaction: MAN6PI</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 5.3.1.8</p> + <p>pmids: 2085314,7702210,8381960,10571009,12231825,15033941</p> + <p>GENE_ASSOCIATION: ENSG00000178802</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0ea26d9f-b8bd-4193-8626-31efb5856906"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.8"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106679"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR101382"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00772"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MAN6PI"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/10571009"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15033941"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7702210"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/8381960"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/12231825"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2085314"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000178802"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01845c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02455c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_GNDc" metaid="ef163958-45f6-498d-acb0-0e2d72945b19" name="Phosphogluconate Dehydrogenase" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID: 4382012, PMID: 13575411, Harpers illustrated Biochemistry (2009) 28th edition pages 174-183</p> + <p>ec-code: 1.1.1.44</p> + <p>bigg.reaction: GNDc</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 1.1.1.44</p> + <p>pmids: 4382012,13575411</p> + <p>GENE_ASSOCIATION: ENSG00000142657</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ef163958-45f6-498d-acb0-0e2d72945b19"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.44"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GNDc"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/13575411"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4382012"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000142657"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01169c" stoichiometry="3"/> + <speciesReference constant="true" species="M_m02554c" stoichiometry="3"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02846c" stoichiometry="3"/> + <speciesReference constant="true" species="M_m02555c" stoichiometry="3"/> + <speciesReference constant="true" species="M_m01596c" stoichiometry="3"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4385" metaid="_83fb9834-0745-47d2-b88f-9cb966a0eefd" name="R_HMR_4385" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:10593562;PMID:12889654;PMID:15361947</p> + <p>ec-code: 5.4.2.8</p> + <p>metanetx.reaction: MNXR101729</p> + <p>kegg.reaction: R01818</p> + <p>bigg.reaction: PMANM</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 5.4.2.8</p> + <p>pmids: 10593562,12889654,15361947</p> + <p>GENE_ASSOCIATION: ( ENSG00000100413 ) OR ( ENSG00000100417 ) OR ( ENSG00000140650 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_83fb9834-0745-47d2-b88f-9cb966a0eefd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.2.8"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR101729"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01818"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PMANM"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15361947"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/12889654"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/10593562"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000140650"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000100417"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000100413"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02455c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02454c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4386" metaid="_1b139dd2-60dd-4d29-b9db-c7cd0c97d62b" name="R_HMR_4386" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:13876695</p> + <p>ec-code: 2.7.7.13 || 2.7.7.22</p> + <p>metanetx.reaction: MNXR101376</p> + <p>kegg.reaction: R00883</p> + <p>bigg.reaction: MAN1PT2</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.7.22;2.7.7.13</p> + <p>pmids: 13876695</p> + <p>GENE_ASSOCIATION: ( ENSG00000144591 ) OR ( ENSG00000164068 ) OR ( ENSG00000173540 ) OR ( ENSG00000176020 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1b139dd2-60dd-4d29-b9db-c7cd0c97d62b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.13"/> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.22"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR101376"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00883"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MAN1PT2"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/13876695"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000164068"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000176020"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000173540"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000144591"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01948c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02454c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01951c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02751c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_ABTD1" metaid="_030d6c02-c016-4e4d-a3a0-100f8b573715" name="L-Arabinitol 4-Dehydrogenase" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID: 16435225</p> + <p>ec-code: 3.1.1.4</p> + <p>bigg.reaction: ABTD1</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 3.1.1.4</p> + <p>pmids: 16435225</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_030d6c02-c016-4e4d-a3a0-100f8b573715"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ABTD1"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/16435225"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <listOfReactants> + <speciesReference constant="true" species="M_m02552c" stoichiometry="1"/> + <speciesReference constant="true" species="M_abt_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02553c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02425c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4387" metaid="_642e9305-23e4-4e3a-b6ef-fe32f9051987" name="R_HMR_4387" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:10025667;PMID:8549746;PMID:9451026</p> + <p>ec-code: 2.7.7.13</p> + <p>metanetx.reaction: MNXR101375</p> + <p>kegg.reaction: R00885</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.7.13</p> + <p>pmids: 8549746,9451026,10025667</p> + <p>GENE_ASSOCIATION: ( ENSG00000144591 ) OR ( ENSG00000173540 ) OR ( ENSG00000176020 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_642e9305-23e4-4e3a-b6ef-fe32f9051987"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.13"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR101375"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00885"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/8549746"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/9451026"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/10025667"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000176020"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000173540"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000144591"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02454c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02034c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01951c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02759c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_9799" metaid="_57352ce2-7ff7-4510-8c37-fe046275ab37" name="R_HMR_9799" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 2.7.1.14</p> + <p>metanetx.reaction: MNXR107202</p> + <p>kegg.reaction: R01844</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.7.1.14</p> + <p>GENE_ASSOCIATION: ENSG00000197417</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_57352ce2-7ff7-4510-8c37-fe046275ab37"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.14"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR107202"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01844"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000197417"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m03165c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02884c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4303" metaid="_073189d4-50c2-4cf1-b826-23bdb07507f8" name="R_HMR_4303" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:12055199</p> + <p>ec-code: 3.2.1.48 || 3.2.1.10 || 3.2.1.20</p> + <p>metanetx.reaction: MNXR104638</p> + <p>kegg.reaction: R00801</p> + <p>bigg.reaction: SUCRe</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 3.2.1.10;3.2.1.20;3.2.1.48</p> + <p>pmids: 12055199</p> + <p>GENE_ASSOCIATION: ( ENSG00000090402 ) OR ( ENSG00000171298 ) OR ( ENSG00000214013 ) OR ( ENSG00000257335 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_073189d4-50c2-4cf1-b826-23bdb07507f8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.48"/> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.10"/> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.20"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104638"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00801"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SUCRe"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/12055199"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000171298"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000257335"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000090402"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000214013"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02040s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02945s" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01965s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01840s" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4501" metaid="_94343e1c-c62d-4149-953b-237ef55a08ca" name="R_HMR_4501" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:13385248;PMID:2495942;UNIPROT:P29401</p> + <p>ec-code: 2.2.1.1</p> + <p>metanetx.reaction: MNXR107105 || MNXR104868</p> + <p>kegg.reaction: R01641</p> + <p>bigg.reaction: TKT1</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.2.1.1</p> + <p>pmids: 2495942,13385248</p> + <p>GENE_ASSOCIATION: ( ENSG00000007350 ) OR ( ENSG00000151005 ) OR ( ENSG00000163931 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_94343e1c-c62d-4149-953b-237ef55a08ca"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.2.1.1"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR107105"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104868"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01641"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TKT1"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2495942"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/13385248"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000163931"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000007350"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000151005"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02845c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01761c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01939c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02884c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4304" metaid="_4a19056f-9291-4536-aee2-1f674e94327c" name="R_HMR_4304" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:15774558;PMID:16756494;PMID:2753047;PMID:4169027</p> + <p>ec-code: 1.1.1.49</p> + <p>metanetx.reaction: MNXR99907</p> + <p>kegg.reaction: R00835</p> + <p>bigg.reaction: G6PDH2er</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 1.1.1.49</p> + <p>pmids: 2753047,4169027,15774558,16756494</p> + <p>GENE_ASSOCIATION: ENSG00000160211</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4a19056f-9291-4536-aee2-1f674e94327c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.49"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99907"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00835"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G6PDH2er"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/16756494"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4169027"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2753047"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15774558"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000160211"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01968r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02554r" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01961r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02555r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039r" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4623" metaid="_977981ea-549f-4af8-8bc9-8f06a599033d" name="R_HMR_4623" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:3858849;PMID:3932573;PMID:6852020;PMID:971315</p> + <p>ec-code: 3.1.1.31</p> + <p>metanetx.reaction: MNXR102539</p> + <p>kegg.reaction: R02035</p> + <p>bigg.reaction: PGLer</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 3.1.1.31</p> + <p>pmids: 971315,3858849,3932573,6852020</p> + <p>GENE_ASSOCIATION: ( ENSG00000049239 ) OR ( ENSG00000130313 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_977981ea-549f-4af8-8bc9-8f06a599033d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.31"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR102539"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R02035"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PGLer"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3932573"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3858849"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6852020"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/971315"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000049239"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000130313"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01961r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02040r" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01169r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039r" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4306" metaid="c51de190-dee0-491f-93ed-9eebe9f571ff" name="R_HMR_4306" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:15774558;PMID:16756494;PMID:2753047;PMID:4169027</p> + <p>ec-code: 1.1.1.49</p> + <p>metanetx.reaction: MNXR99907</p> + <p>kegg.reaction: R00835</p> + <p>bigg.reaction: G6PDH2r</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 1.1.1.49</p> + <p>pmids: 2753047,4169027,15774558,16756494</p> + <p>GENE_ASSOCIATION: ENSG00000160211</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c51de190-dee0-491f-93ed-9eebe9f571ff"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.49"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99907"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00835"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G6PDH2r"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/16756494"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4169027"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2753047"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15774558"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000160211"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01961c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02555c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02554c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01968c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4625" metaid="ce25ac8c-d5cd-45bf-aa0f-b5091cc8f920" name="R_HMR_4625" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:3858849;PMID:3932573;PMID:6852020;PMID:971315</p> + <p>ec-code: 3.1.1.31</p> + <p>metanetx.reaction: MNXR102539</p> + <p>kegg.reaction: R02035</p> + <p>bigg.reaction: PGL</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 3.1.1.31</p> + <p>pmids: 971315,3858849,3932573,6852020</p> + <p>GENE_ASSOCIATION: ( ENSG00000049239 ) OR ( ENSG00000130313 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ce25ac8c-d5cd-45bf-aa0f-b5091cc8f920"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.31"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR102539"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R02035"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PGL"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3932573"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3858849"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6852020"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/971315"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000049239"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000130313"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02040c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01961c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01169c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4706" metaid="_76f44f32-e827-409c-9f89-d39564cf363b" name="R_HMR_4706" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:11245921;PMID:12379646;PMID:15170386;PMID:15581487;PMID:16316985;PMID:2837207</p> + <p>ec-code: 3.1.3.46 || 3.1.3.11</p> + <p>metanetx.reaction: MNXR106671 || MNXR99466</p> + <p>kegg.reaction: R00763</p> + <p>bigg.reaction: FBP26</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 3.1.3.46;3.1.3.11</p> + <p>pmids: 2837207,11245921,12379646,15170386,15581487,16316985</p> + <p>GENE_ASSOCIATION: ( ENSG00000078237 ) OR ( ENSG00000108813 ) OR ( ENSG00000114268 ) OR ( ENSG00000123836 ) OR ( ENSG00000158571 ) OR ( ENSG00000170525 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_76f44f32-e827-409c-9f89-d39564cf363b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.46"/> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.11"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106671"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99466"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00763"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FBP26"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/16316985"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/12379646"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15581487"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15170386"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/11245921"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2837207"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000123836"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000170525"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000108813"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000158571"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000078237"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000114268"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02040c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01843c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02751c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01845c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_G6PDH2c" metaid="_65f65765-bf14-48a2-8308-72aa949d0dd7" name="Glucose 6-Phosphate Dehydrogenase" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID: 4382012, PMID: 13575411, Harpers illustrated Biochemistry (2009) 28th edition pages 174-183</p> + <p>bigg.reaction: G6PDH2c</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>pmids: 4382012,13575411</p> + <p>GENE_ASSOCIATION: ENSG00000160211</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_65f65765-bf14-48a2-8308-72aa949d0dd7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G6PDH2c"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/13575411"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4382012"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000160211"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02554c" stoichiometry="3"/> + <speciesReference constant="true" species="M_m01968c" stoichiometry="3"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01961c" stoichiometry="3"/> + <speciesReference constant="true" species="M_m02555c" stoichiometry="3"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="3"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_8074" metaid="c6249ea1-2eba-44b9-b389-c3bb870070af" name="R_HMR_8074" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 2.7.1.15</p> + <p>metanetx.reaction: MNXR97787</p> + <p>kegg.reaction: R02750</p> + <p>bigg.reaction: DRPA</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.7.1.15</p> + <p>GENE_ASSOCIATION: ( ENSG00000158019 ) OR ( ENSG00000171174 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c6249ea1-2eba-44b9-b389-c3bb870070af"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.15"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97787"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R02750"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DRPA"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000171174"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000158019"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01672c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m00640c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4350" metaid="cd869f58-5452-4226-8cfe-b859d4054a8f" name="R_HMR_4350" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:13295274;PMID:17618002</p> + <p>ec-code: 2.7.1.15</p> + <p>metanetx.reaction: MNXR106804 || MNXR103431</p> + <p>kegg.reaction: R01051</p> + <p>bigg.reaction: RBK</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.7.1.15</p> + <p>pmids: 13295274,17618002</p> + <p>GENE_ASSOCIATION: ( ENSG00000158019 ) OR ( ENSG00000171174 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cd869f58-5452-4226-8cfe-b859d4054a8f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.15"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106804"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103431"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01051"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RBK"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/13295274"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/17618002"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000171174"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000158019"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02845c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02843c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_KHK3" metaid="_2f83a279-1e91-4c20-ab35-0fbd94c31885" name="Ketohexokinase (D-Tagatose)" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:2996495,PMID:6284103,PMID:6298387</p> + <p>ec-code: 2.7.1.3</p> + <p>metanetx.reaction: MNXR100938</p> + <p>bigg.reaction: KHK3</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.7.1.3</p> + <p>pmids: 2996495,6284103,6298387</p> + <p>GENE_ASSOCIATION: ENSG00000138030</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2f83a279-1e91-4c20-ab35-0fbd94c31885"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.3"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100938"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/KHK3"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2996495"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6298387"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6284103"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000138030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01745c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_tag1p_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4351" metaid="_6bfc4346-8d59-4fd8-af6b-41405b4de8a1" name="R_HMR_4351" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:14690456;PMID:14988808;PMID:15234337;PMID:2843500</p> + <p>ec-code: 5.3.1.6</p> + <p>metanetx.reaction: MNXR104084 || MNXR106809</p> + <p>kegg.reaction: R01056</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 5.3.1.6</p> + <p>pmids: 2843500,14690456,14988808,15234337</p> + <p>GENE_ASSOCIATION: ENSG00000153574</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6bfc4346-8d59-4fd8-af6b-41405b4de8a1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.6"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104084"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106809"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01056"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2843500"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/14690456"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15234337"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/14988808"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000153574"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02845r" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02846r" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4473" metaid="c7c1f092-4aea-48a2-8d25-feb3f47ea431" name="R_HMR_4473" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:12398160;PMID:1504088;PMID:15558954;PMID:16756494;PMID:2753047;PMID:3943305;PMID:6212636;PMID:7194116;PMID:7225115;PMID:7623792</p> + <p>ec-code: 1.1.1.44</p> + <p>metanetx.reaction: MNXR100389</p> + <p>kegg.reaction: R01528</p> + <p>bigg.reaction: GNDer</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 1.1.1.44</p> + <p>pmids: 1504088,2753047,3943305,6212636,7194116,7225115,7623792,12398160,15558954,16756494</p> + <p>GENE_ASSOCIATION: ENSG00000142657</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c7c1f092-4aea-48a2-8d25-feb3f47ea431"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.44"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100389"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01528"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GNDer"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/16756494"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6212636"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7623792"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3943305"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7225115"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15558954"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7194116"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/12398160"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2753047"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/1504088"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000142657"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01169r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02554r" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02846r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02555r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01596r" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4352" metaid="be77e7e9-9978-4d8f-9533-2dd900d0bde5" name="R_HMR_4352" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:14690456;PMID:14988808;PMID:15234337;PMID:2843500</p> + <p>ec-code: 5.3.1.6</p> + <p>metanetx.reaction: MNXR104084 || MNXR106809</p> + <p>kegg.reaction: R01056</p> + <p>bigg.reaction: RPI</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 5.3.1.6</p> + <p>pmids: 2843500,14690456,14988808,15234337</p> + <p>GENE_ASSOCIATION: ENSG00000153574</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#be77e7e9-9978-4d8f-9533-2dd900d0bde5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.6"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104084"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106809"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01056"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RPI"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2843500"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/14690456"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15234337"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/14988808"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000153574"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02845c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02846c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4474" metaid="_83d5dfd1-ca06-416b-8f50-068a6b157458" name="R_HMR_4474" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:12398160;PMID:1504088;PMID:15558954;PMID:16756494;PMID:2753047;PMID:3943305;PMID:6212636;PMID:7194116;PMID:7225115;PMID:7623792</p> + <p>ec-code: 1.1.1.44</p> + <p>metanetx.reaction: MNXR100389</p> + <p>kegg.reaction: R01528</p> + <p>bigg.reaction: GND</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 1.1.1.44</p> + <p>pmids: 1504088,2753047,3943305,6212636,7194116,7225115,7623792,12398160,15558954,16756494</p> + <p>GENE_ASSOCIATION: ENSG00000142657</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_83d5dfd1-ca06-416b-8f50-068a6b157458"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.44"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100389"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01528"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GND"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/16756494"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6212636"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7623792"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3943305"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7225115"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15558954"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7194116"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/12398160"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2753047"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/1504088"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000142657"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01169c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02554c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02846c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02555c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01596c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_9800" metaid="_329c99c1-064e-4527-a8da-785581323147" name="R_HMR_9800" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 2.7.1.3</p> + <p>metanetx.reaction: MNXR108451</p> + <p>kegg.reaction: R03819</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.7.1.3</p> + <p>GENE_ASSOCIATION: ENSG00000138030</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_329c99c1-064e-4527-a8da-785581323147"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.3"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR108451"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R03819"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000138030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m03165c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m03166c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4398" metaid="c2e9d022-c156-4c88-a796-2bc148714535" name="R_HMR_4398" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:4989681;PMID:9226884</p> + <p>ec-code: 4.1.2.4</p> + <p>metanetx.reaction: MNXR97787</p> + <p>kegg.reaction: R01066</p> + <p>bigg.reaction: DRPA</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 4.1.2.4</p> + <p>pmids: 4989681,9226884</p> + <p>GENE_ASSOCIATION: ENSG00000023697</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c2e9d022-c156-4c88-a796-2bc148714535"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.4"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97787"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01066"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DRPA"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/9226884"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4989681"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000023697"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m00640c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01939c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01249c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4354" metaid="f7108fb4-b7e5-49a3-ada1-a6024a22b77c" name="R_HMR_4354" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:14953458;PMID:3023765;PMID:5769188;PMID:8050998</p> + <p>ec-code: 5.4.2.2 || 5.4.2.7</p> + <p>metanetx.reaction: MNXR106810 || MNXR103115</p> + <p>kegg.reaction: R01057</p> + <p>bigg.reaction: PPM</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 5.4.2.2;5.4.2.7</p> + <p>pmids: 3023765,5769188,8050998,14953458</p> + <p>GENE_ASSOCIATION: ( ENSG00000079739 ) OR ( ENSG00000169299 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f7108fb4-b7e5-49a3-ada1-a6024a22b77c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.2.2"/> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.2.7"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106810"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103115"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01057"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PPM"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/14953458"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3023765"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/5769188"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/8050998"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000169299"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000079739"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02844c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02845c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4310" metaid="_9239b4c7-a967-4956-b094-a7de9aff2cba" name="R_HMR_4310" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:2996495;PMID:7833921</p> + <p>ec-code: 2.7.1.3</p> + <p>metanetx.reaction: MNXR100936</p> + <p>kegg.reaction: R00866</p> + <p>bigg.reaction: KHK</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.1.3</p> + <p>pmids: 2996495,7833921</p> + <p>GENE_ASSOCIATION: ENSG00000138030</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9239b4c7-a967-4956-b094-a7de9aff2cba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.3"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100936"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00866"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/KHK"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2996495"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7833921"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000138030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01840c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01842c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4476" metaid="_9560c25f-9d92-4a3c-bfbb-374877a611c3" name="R_HMR_4476" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:10978316</p> + <p>ec-code: 2.3.1.57</p> + <p>metanetx.reaction: MNXR100390</p> + <p>kegg.reaction: R01737</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.3.1.57</p> + <p>pmids: 10978316</p> + <p>GENE_ASSOCIATION: ( ENSG00000130066 ) OR ( ENSG00000141504 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9560c25f-9d92-4a3c-bfbb-374877a611c3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.57"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100390"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01737"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/10978316"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000141504"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000130066"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01169c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01683c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4399" metaid="_961e9144-e77b-430b-8dd8-8001acf778ea" name="R_HMR_4399" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:9893952</p> + <p>ec-code: 4.2.1.47</p> + <p>metanetx.reaction: MNXR100377</p> + <p>kegg.reaction: R00888</p> + <p>bigg.reaction: GMAND</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 4.2.1.47</p> + <p>pmids: 9893952</p> + <p>GENE_ASSOCIATION: ENSG00000112699</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_961e9144-e77b-430b-8dd8-8001acf778ea"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.47"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100377"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00888"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GMAND"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/9893952"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000112699"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01951c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02040c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01949c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4477" metaid="_44d922a9-9c8a-409b-b662-408d43f39b21" name="R_HMR_4477" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:15234337;PMID:234468;PMID:2843500</p> + <p>ec-code: 5.1.3.1</p> + <p>metanetx.reaction: MNXR104083</p> + <p>kegg.reaction: R01529</p> + <p>bigg.reaction: RPE</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 5.1.3.1</p> + <p>pmids: 234468,2843500,15234337</p> + <p>GENE_ASSOCIATION: ( ENSG00000197713 ) OR ( ENSG00000235376 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_44d922a9-9c8a-409b-b662-408d43f39b21"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.3.1"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104083"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01529"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RPE"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/234468"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2843500"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15234337"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000197713"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000235376"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01761c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02846c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4356" metaid="e6efa094-5aeb-412c-8390-f6707d0794e0" name="R_HMR_4356" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:5114731;PMID:5655259;PMID:6054986</p> + <p>ec-code: 4.1.2.13</p> + <p>metanetx.reaction: MNXR99460</p> + <p>kegg.reaction: R02568</p> + <p>bigg.reaction: FBA2</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 4.1.2.13</p> + <p>pmids: 5114731,5655259,6054986</p> + <p>GENE_ASSOCIATION: ( ENSG00000109107 ) OR ( ENSG00000136872 ) OR ( ENSG00000149925 ) OR ( ENSG00000285043 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e6efa094-5aeb-412c-8390-f6707d0794e0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.13"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99460"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R02568"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FBA2"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/5114731"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6054986"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/5655259"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000136872"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000149925"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000109107"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000285043"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01690c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01981c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01842c" stoichiometry="1"/> + </listOfProducts> + </reaction> + </listOfReactions> + </model> +</sbml>
--- a/tools/attributes/ExtractPathways/ExtractPathways.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/attributes/ExtractPathways/ExtractPathways.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_ExtractPathways" name="ExtractPathways" version="1.0.1"> +<tool id="met4j_ExtractPathways" name="ExtractPathways" version="1.1.0"> <description>Extract pathway(s) from GSMN</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.ExtractPathways -i "$inputPath" -p "$pathwayId"
--- a/tools/attributes/ExtractSbmlAnnot/ExtractSbmlAnnot.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/attributes/ExtractSbmlAnnot/ExtractSbmlAnnot.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_ExtractSbmlAnnot" name="ExtractSbmlAnnot" version="1.0.1"> +<tool id="met4j_ExtractSbmlAnnot" name="ExtractSbmlAnnot" version="1.1.0"> <description>Extract databases' references from SBML annotations or notes.</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.ExtractSbmlAnnot -i "$inputPath" -export "$export"
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/attributes/GetGenesFromReactions/GetGenesFromReactions.xml Fri Jul 29 13:23:40 2022 +0000 @@ -0,0 +1,50 @@ +<?xml version="1.0" encoding="UTF-8"?> +<tool id="met4j_GetGenesFromReactions" name="GetGenesFromReactions" version="1.1.0"> + <description>Get gene lists from a list of reactions and a GSMN.</description> + <xrefs> + <xref type="bio.tools">met4j</xref> + </xrefs> + <requirements> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> + </requirements> + <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.GetGenesFromReactions -i "$sbml" + -r "$reactionFile" +#if str($sep): + -sep "$sep" +#end if + $hasHeader +#if str($i) != 'nan': + -col "$i" +#end if + -o "$outputFile" +]]></command> + <inputs> + <param argument="-i" format="sbml" label="Input SBML file" name="sbml" optional="false" type="data" value=""/> + <param argument="-r" format="tsv" label="Input Reaction file" name="reactionFile" optional="false" type="data" value=""/> + <param argument="-sep" label="Separator in reaction file" name="sep" optional="true" type="text" value="	"> + <sanitizer invalid_char="_"> + <valid initial="string.printable"/> + </sanitizer> + </param> + <param argument="-header" checked="false" falsevalue="" label="Skip reaction file header" name="hasHeader" truevalue="-header" type="boolean" value="false"/> + <param argument="-col" label="Column number in reaction file (first as 1)" name="i" optional="true" type="integer" value="1"/> + </inputs> + <outputs> + <data format="tsv" name="outputFile"/> + </outputs> + <tests> + <test> + <param name="sbml" value="XF_network.sbml"/> + <param name="reactionFile" value="XF_network_R_Seed.tab"/> + <output ftype="tsv" name="outputFile"> + <assert_contents> + <has_n_lines n="2"/> + <has_line_matching expression="R_GLUN.*XFCFBP8418_026750" n="1"/> + <has_line_matching expression="R_ACGS.*XFCFBP8418_025260" n="1"/> + </assert_contents> + </output> + </test> + </tests> + <help><![CDATA[Get associated gene list from a list of reactions and a GSMN. Parse GSMN GPR annotations and output a tab-separated file with one row per gene, associated reaction identifiers from input file in first column, gene identifiers in second column.]]></help> + <citations/> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/attributes/GetGenesFromReactions/test-data/XF_network.sbml Fri Jul 29 13:23:40 2022 +0000 @@ -0,0 +1,47267 @@ +<?xml version="1.0" encoding="UTF-8"?> +<sbml fbc:required="false" groups:required="false" level="3" version="2" xmlns="http://www.sbml.org/sbml/level3/version2/core" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1"> + <model fbc:strict="true" id="Xfm1158" metaid="Xfm1158" name="Xfm1158"> + <fbc:listOfGeneProducts> + <fbc:geneProduct fbc:id="XFCFBP8418_007090" fbc:label="XFCFBP8418_007090" fbc:name="XFCFBP8418_007090" metaid="_8a7d7180-d79e-4dbb-86ed-f8d7eb60e698"/> + <fbc:geneProduct fbc:id="XFCFBP8418_005900" fbc:label="XFCFBP8418_005900" fbc:name="XFCFBP8418_005900" metaid="_867487dd-ff57-4e93-8de9-b5ecb805e0eb"/> + <fbc:geneProduct fbc:id="XFCFBP8418_011590" fbc:label="XFCFBP8418_011590" fbc:name="XFCFBP8418_011590" 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spatialDimensions="3"/> + </listOfCompartments> + <listOfSpecies> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H29O2" hasOnlySubstanceUnits="true" id="M_hdcea_c" metaid="_83a30aa3-d844-48f9-a634-0d61506245d3" name="M_hdcea_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H29O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H29O2" hasOnlySubstanceUnits="true" id="M_hdcea_e" metaid="_5b81de6a-46d4-4aa1-b51a-a61989930aa1" name="Hexadecenoate__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H29O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H29N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ohexACP_c" metaid="_09cc2866-3763-4a58-b634-1e9391011c2c" name="3_Oxohexanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H29N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO6" hasOnlySubstanceUnits="true" id="M_sucgsa_c" metaid="_95bdb449-54c9-4128-a9b7-5d7bee0b8728" name="M_sucgsa_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11NO6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H21N5O15P2" hasOnlySubstanceUnits="true" id="M_gdpddman_c" metaid="_5621cf38-5dfc-4cf2-b7e3-283d7235c86b" name="GDP_4_dehydro_6_deoxy_D_mannose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H21N5O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H13N2O2" hasOnlySubstanceUnits="true" id="M_orn_p" metaid="c3c6cd96-69bb-4134-bd0d-223a4a770348" name="Ornithine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H13N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO4" hasOnlySubstanceUnits="true" id="M_glu_D_c" metaid="_71a68abb-5db5-4c53-91d2-24a2e4beab94" name="D_Glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="MoO4" hasOnlySubstanceUnits="true" id="M_mobd_e" metaid="_42cec621-b997-409f-ae61-2b06e193e88c" name="Molybdate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: MoO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O8P" hasOnlySubstanceUnits="true" id="M_g3pg_c" metaid="_4195cc12-3ead-499a-babc-f43402625ce1" name="Glycerophosphoglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H14O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O" hasOnlySubstanceUnits="true" id="M_h2o_p" metaid="_1d2341b1-a141-4a22-bd62-fa338f7f2346" name="H2O" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O8P" hasOnlySubstanceUnits="true" id="M_g3pg_e" metaid="_2afa5d9d-9d23-45cd-a848-5b2daa9ce630" name="Glycerophosphoglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H14O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaasp_c" metaid="_81402407-ed90-4c32-b133-7c1b5a2e1a6e" name="tRNA_Asp_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Ni" hasOnlySubstanceUnits="true" id="M_ni2_p" metaid="c63ab7cd-3059-44f4-ae8f-9b967625ebca" name="nickel" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Ni</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H74N1O8P1" hasOnlySubstanceUnits="true" id="M_pe160_c" metaid="_59c509d6-1751-4e87-b01c-14cf34ac9b4c" name="phosphatidylethanolamine__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H74N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H31N2O8PRS" hasOnlySubstanceUnits="true" id="M_hexACP_c" metaid="d3d3b718-243e-4d20-b658-13f3bb77c444" name="Hexanoyl_ACP__n_C6_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H31N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="MoO4" hasOnlySubstanceUnits="true" id="M_mobd_c" metaid="cf476b69-9c74-45db-bf2b-145a2fd50ba3" name="Molybdate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: MoO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C77H117N15O40" hasOnlySubstanceUnits="true" id="M_murein5px4p_p" metaid="c53ad754-9f5c-4984-af4c-6b2b5e446284" name="two_disacharide_linked_murein_units__pentapeptide_crosslinked_tetrapeptide__A2pm__D_ala___middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C77H117N15O40</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10O3" hasOnlySubstanceUnits="true" id="M_dmoxpol_c" metaid="beb0eb5d-519f-4b06-8171-7dc4a7d1af7b" name="Dimethoxyphenol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H10O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H74N1O8P1" hasOnlySubstanceUnits="true" id="M_pe160_p" metaid="a44dcca2-66e7-44ae-9186-978f6b1542ba" name="phosphatidylethanolamine__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H74N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Ni" hasOnlySubstanceUnits="true" id="M_ni2_e" metaid="_6949f66e-e627-4fdb-9009-56246e4dc4b0" name="nickel" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Ni</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Ni" hasOnlySubstanceUnits="true" id="M_ni2_c" metaid="_40131acb-4ecf-4acd-af9c-91224f8e4960" name="nickel" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Ni</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9O6" hasOnlySubstanceUnits="true" id="M_3dhq_c" metaid="_89b598af-c5d9-4d78-a32f-886d14936013" name="3_Dehydroquinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H9O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11N3O4P" hasOnlySubstanceUnits="true" id="M_hisp_c" metaid="_406b497f-432f-4b2b-a34a-075cb4a46571" name="L_Histidinol_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11N3O4P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O4" hasOnlySubstanceUnits="true" id="M_23dhmb_c" metaid="_07921bfa-da8f-4679-84dc-9765988d4938" name="R__2_3_Dihydroxy_3_methylbutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N4O9P" hasOnlySubstanceUnits="true" id="M_fprica_c" metaid="_72798c59-4852-475e-a2d5-2e972bc9ac1c" name="5_Formamido_1__5_phospho_D_ribosyl_imidazole_4_carboxamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N4O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15O2" hasOnlySubstanceUnits="true" id="M_octa_p" metaid="_30c3518e-a938-43f3-9051-a3e711f90b51" name="octanoate__n_C8_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H15O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H65N1O10P1" hasOnlySubstanceUnits="true" id="M_ps140_c" metaid="_3aa73b52-633a-48e2-b679-62294e71a142" name="phosphatidylserine__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H65N1O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_man6p_c" metaid="_6a1d6c5a-1a82-48c8-b683-6aaa8bc960f0" name="D_Mannose_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N4O9P" hasOnlySubstanceUnits="true" id="M_5aprbu_c" metaid="_956bb393-be66-4b4b-a4ba-2d429c8bd248" name="5_Amino_6__5__phosphoribitylamino_uracil" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H15N4O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="X" hasOnlySubstanceUnits="true" id="M_dsbdox_c" metaid="_284731a5-c739-47cf-8d77-97ce4a14ed4a" name="fused_thiol_disulfide_interchange_protein__oxidized_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: X</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O13P3" hasOnlySubstanceUnits="true" id="M_atp_c" metaid="_19cd466b-47a4-41ff-8587-533476481886" name="ATP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O13P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5" hasOnlySubstanceUnits="true" id="M_fuc_L_p" metaid="_61db7a7f-c90a-4ce6-bca1-2f069f020836" name="M_fuc_L_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N2O3S" hasOnlySubstanceUnits="true" id="M_btn_e" metaid="_927232ea-6021-48bc-9666-ef542c59560c" name="M_btn_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H15N2O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NOSR" hasOnlySubstanceUnits="true" id="M_cystrna_c" metaid="f79ecc3e-685c-48e1-80dc-e13aa96fbbed" name="L_Cysteinyl_tRNA_Cys_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NOSR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15O2" hasOnlySubstanceUnits="true" id="M_octa_c" metaid="cc6b7289-42de-4e34-8da9-691d9ccc8500" name="octanoate__n_C8_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H15O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N2O3S" hasOnlySubstanceUnits="true" id="M_btn_p" metaid="_749e35e8-ab24-45d7-93ba-1afe7f049832" name="M_btn_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H15N2O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8NO4PS" hasOnlySubstanceUnits="true" id="M_4mpetz_c" metaid="cd921023-9544-4ec4-b121-887e4358d966" name="4_Methyl_5__2_phosphoethyl__thiazole" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H8NO4PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H13N2O2" hasOnlySubstanceUnits="true" id="M_orn_c" metaid="c72afa0a-cfdb-4bcf-ab8d-2d7b74fb2088" name="Ornithine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H13N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NOR" hasOnlySubstanceUnits="true" id="M_valtrna_c" metaid="_4251ba8b-01cc-4752-9443-08cef24bdb93" name="L_Valyl_tRNA_Val_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NOR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnagly_c" metaid="_9c1bcdbe-60da-4ece-bd5a-0a9bf30c26b0" name="tRNA_Gly_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H13N2O2" hasOnlySubstanceUnits="true" id="M_orn_e" metaid="_86686940-58f7-40a6-b87b-9bcfb66c59e9" name="Ornithine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H13N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H36N7O19P3S" hasOnlySubstanceUnits="true" id="M_malcoame_c" metaid="_1052078b-3eba-478d-9087-7b7e0e161b42" name="malonyl_CoA_methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H36N7O19P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O" hasOnlySubstanceUnits="true" id="M_h2o_e" metaid="e11a6b2b-0b7e-4a36-8a04-0af722bbf9c1" name="H2O" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H32N4O4" hasOnlySubstanceUnits="true" id="M_ppp9_c" metaid="d533814d-ad29-4c19-8387-463c4c6fa319" name="Protoporphyrin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H32N4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2" hasOnlySubstanceUnits="true" id="M_co2_e" metaid="_3421dea5-b95e-4be2-b898-7349691945a2" name="Carbon_dioxide_CO2" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O" hasOnlySubstanceUnits="true" id="M_h2o_c" metaid="ba40bb8c-cf64-404e-9faa-1c5435e09c2c" name="H2O" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N2O3S" hasOnlySubstanceUnits="true" id="M_btn_c" metaid="e34048c3-50fa-419d-9e5d-ac985f6fdf30" name="Biotin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H15N2O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2" hasOnlySubstanceUnits="true" id="M_co2_c" metaid="_7f7c8e07-16ce-490f-b701-6cfb7edd1cc5" name="Carbon_dioxide_CO2" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O8P" hasOnlySubstanceUnits="true" id="M_cmp_c" metaid="ce3a8631-3514-4927-a5fc-9266053df778" name="CMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N3O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N2O5" hasOnlySubstanceUnits="true" id="M_sucorn_c" metaid="_49eee4fa-a32f-4d62-99a1-a758a3e171b8" name="M_sucorn_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H15N2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11O7P" hasOnlySubstanceUnits="true" id="M_2me4p_c" metaid="_74b04e95-84b3-4aab-94da-f8858bd56b44" name="2_C_methyl_D_erythritol_4_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C107H177N29O29S2" hasOnlySubstanceUnits="true" id="M_LesA_e" metaid="_795a3dc1-b108-47e4-82da-a966f9204c0e" name="M_LesA_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C107H177N29O29S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H61O13P2" hasOnlySubstanceUnits="true" id="M_pgp141_c" metaid="_7bc2cd0a-2755-4383-9602-b2b68e04de0e" name="Phosphatidylglycerophosphate__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H61O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C107H177N29O29S2" hasOnlySubstanceUnits="true" id="M_LesA_c" metaid="_9a311e5a-f85b-4af7-83b1-307bb1e1a41e" name="M_LesA_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C107H177N29O29S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N10O21P4" hasOnlySubstanceUnits="true" id="M_gp4g_c" metaid="_7f862854-7604-4f31-90ef-06ec0af81a4a" name="P1_P4_Bis_5__guanosyl__tetraphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H24N10O21P4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HSe" hasOnlySubstanceUnits="true" id="M_seln_c" metaid="_7f45bce4-645d-4eb0-a162-61532f8bb480" name="Selenide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HSe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2" hasOnlySubstanceUnits="true" id="M_co2_p" metaid="e3fda4fd-1cd7-4cfc-9921-a79e27f8ce10" name="Carbon_dioxide_CO2" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10O5" hasOnlySubstanceUnits="true" id="M_3c3hmp_c" metaid="_216d7643-f563-44c8-9cd7-6c6f804a68b7" name="3_Carboxy_3_hydroxy_4_methylpentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H66N7O17P3S" hasOnlySubstanceUnits="true" id="M_stcoa_c" metaid="bded8546-6745-4b87-a769-96038f1148b6" name="Stearoyl_CoA__n_C18_0CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H66N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdhdecg_c" metaid="_71e9eef0-13ec-4a15-ae4e-41e4f8012ba2" name="CDP_1_2_dihexadecanoylglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C44H79N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H61O13P2" hasOnlySubstanceUnits="true" id="M_pgp141_p" metaid="f1441528-9bed-4ed1-81d1-40a0e3d45edf" name="Phosphatidylglycerophosphate__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H61O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H12O11P" hasOnlySubstanceUnits="true" id="M_kdo8p_c" metaid="_3870b262-b055-423b-82f9-cceb24028cf0" name="3_Deoxy_D_manno_octulosonate_8_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H12O11P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H21N4O9P" hasOnlySubstanceUnits="true" id="M_fmnh2_c" metaid="fbc52601-3142-4153-a874-df831c3329e3" name="Reduced_FMN" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H21N4O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_f1p_c" metaid="_732925ea-c862-44b5-b095-fc72f48c84c1" name="D_Fructose_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C80H124N16O42" hasOnlySubstanceUnits="true" id="M_murein5p5p_p" metaid="_767502c9-bffc-4038-9454-353c3eec46b5" name="two_linked_disacharide_pentapeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C80H124N16O42</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H63O8P" hasOnlySubstanceUnits="true" id="M_pa161_p" metaid="_859222c2-bac6-476c-aec6-1e01bb937695" name="1_2_dihexadec_9_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H63O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25N2O8PRS" hasOnlySubstanceUnits="true" id="M_but2eACP_c" metaid="e30db6f9-3447-42ac-bfd6-6c005ac804b3" name="But_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H25N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H58N7O17P3S" hasOnlySubstanceUnits="true" id="M_tdcoa_c" metaid="_40b38630-6ac7-4df3-b3d1-b8b6c5937bf9" name="Tetradecanoyl_CoA__n_C14_0CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H58N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C107H177N29O29S2" hasOnlySubstanceUnits="true" id="M_LesA_p" metaid="fab00509-5733-4be1-812b-dcd3bf58f433" name="M_LesA_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C107H177N29O29S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18O11P" hasOnlySubstanceUnits="true" id="M_g3pi_p" metaid="_0c73fa4a-1bce-4d13-84df-e0da19418edc" name="sn_Glycero_3_phospho_1_inositol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H18O11P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H29O7P1" hasOnlySubstanceUnits="true" id="M_1ddecg3p_c" metaid="ecffca5d-e302-4a6b-831c-ea3a5c41242e" name="1_dodecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H29O7P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H63O8P" hasOnlySubstanceUnits="true" id="M_pa161_c" metaid="_435728ef-032c-4a1e-b01c-fa04d674b275" name="1_2_dihexadec_9_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H63O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H76O4" hasOnlySubstanceUnits="true" id="M_q8h2_c" metaid="_4974a112-1b7c-4849-ba38-76daac76671f" name="Ubiquinol_8" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C49H76O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C940H1548N8O661P8" hasOnlySubstanceUnits="true" id="M_core_kdo2lip6_XF_p" metaid="cff7fb8f-ce56-4a84-acd8-a2651d1805c3" name="M_core_kdo2lip6_XF_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C940H1548N8O661P8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="HPO4" hasOnlySubstanceUnits="true" id="M_pi_e" metaid="_42bc2734-835b-4640-9646-02c816f521ca" name="Phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HPO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C71H109N13O39" hasOnlySubstanceUnits="true" id="M_murein4p3p_p" metaid="f8f7d39e-bdaa-4ee9-814d-c0b4ec9160f5" name="two_linked_disacharide_tetrapeptide_and_tripeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C71H109N13O39</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="HPO4" hasOnlySubstanceUnits="true" id="M_pi_p" metaid="_61d6192c-12fb-4874-8564-e8046e4c5c4b" name="Phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HPO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O2" hasOnlySubstanceUnits="true" id="M_ac_p" metaid="_5b78739f-a245-49b5-a6c1-569bfc8d4190" name="Acetate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H3O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H23N5O15P2" hasOnlySubstanceUnits="true" id="M_gdp6dm_c" metaid="f67b76aa-cca5-41d4-aa13-b154bd82377c" name="M_gdp6dm_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H23N5O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaser_c" metaid="_94ef3223-799e-471a-a1c8-613e870c7f5d" name="tRNA_Ser_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18O11P" hasOnlySubstanceUnits="true" id="M_g3pi_c" metaid="fc2173d0-12bd-44f8-89a1-2a39027bfe36" name="sn_Glycero_3_phospho_1_inositol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H18O11P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H27N3O15" hasOnlySubstanceUnits="true" id="M_enter_c" metaid="e0461604-6ffb-422a-b6b7-7b113fa01607" name="M_enter_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H27N3O15</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18O11P" hasOnlySubstanceUnits="true" id="M_g3pi_e" metaid="_4b9027db-81ed-47db-90e0-74b9277095ad" name="sn_Glycero_3_phospho_1_inositol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H18O11P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H27N3O15" hasOnlySubstanceUnits="true" id="M_enter_e" metaid="_5703cd1f-aea5-4cf1-8f7d-5f9cf0f72c8d" name="M_enter_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H27N3O15</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaasn_c" metaid="_1e5964c2-05d7-4d2a-a5b9-dec66466ab0e" name="M_trnaasn_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="R" hasOnlySubstanceUnits="true" id="M_CopA_p" metaid="_12b71ebf-a259-4f49-8429-b7845a88e872" name="Protein_CopA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N6O12S2" hasOnlySubstanceUnits="true" id="M_gthox_c" metaid="c7bf02ef-66b8-4dc1-9026-53fec7f7feee" name="Oxidized_glutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H30N6O12S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C940H1548N8O661P8" hasOnlySubstanceUnits="true" id="M_core_kdo2lip6_XF_c" metaid="_523bd485-6a20-4c1c-ba49-a4bcd8e839f5" name="M_core_kdo2lip6_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C940H1548N8O661P8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C940H1548N8O661P8" hasOnlySubstanceUnits="true" id="M_core_kdo2lip6_XF_e" metaid="_3c4b17e4-1a58-4d30-a679-831996c94151" name="M_core_kdo2lip6_XF_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C940H1548N8O661P8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H27N2O11PRS" hasOnlySubstanceUnits="true" id="M_ogmeACP_c" metaid="_83613f5f-54e6-4465-b92a-7751cae06841" name="3_Oxo_glutaryl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H27N2O11PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaleu_c" metaid="_107bbd4f-b67f-4387-9455-7b833fcf6e1e" name="tRNA_Leu_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnalys_c" metaid="_79f3e812-04d9-429e-be7d-00d183252771" name="tRNA_Lys_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O6P" hasOnlySubstanceUnits="true" id="M_g3p_c" metaid="_2455d675-97e0-427d-80b5-ef339cc6e2ac" name="Glyceraldehyde_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H27N3O15" hasOnlySubstanceUnits="true" id="M_enter_p" metaid="_36d171ac-68e5-47ea-84de-7f657cad5803" name="M_enter_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H27N3O15</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2Se" hasOnlySubstanceUnits="true" id="M_selcys_c" metaid="_2ef535bc-d692-4e1e-9cc9-ce51d614b918" name="M_selcys_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2Se</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O3" hasOnlySubstanceUnits="true" id="M_acorn_c" metaid="_2df9a240-cce3-45d5-92ab-8d8b55b249ba" name="N2_Acetyl_L_ornithine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H14N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HPO4" hasOnlySubstanceUnits="true" id="M_pi_c" metaid="b321ede9-f332-40f5-bd9c-8757e9fae686" name="Phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HPO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N6O12S2" hasOnlySubstanceUnits="true" id="M_gthox_e" metaid="cb7ad6c5-1d9d-46be-985b-1580063ca9d6" name="Oxidized_glutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H30N6O12S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2R" hasOnlySubstanceUnits="true" id="M_sertrna_sec_c" metaid="_813b9900-7e83-4d33-8f58-d813654969ef" name="M_sertrna_sec_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO4" hasOnlySubstanceUnits="true" id="M_achms_c" metaid="_654b6487-592d-4ac2-9d08-f499b6df30b3" name="O_Acetyl_L_homoserine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H21N7O7" hasOnlySubstanceUnits="true" id="M_10fthf_c" metaid="a18c185f-3892-48a6-9c88-b7d7fb0619e6" name="10_Formyltetrahydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H21N7O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32N7O16P3S" hasOnlySubstanceUnits="true" id="M_coa_c" metaid="c9061d98-c8fc-433d-a37f-e984fe545067" name="Coenzyme_A" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H32N7O16P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O2S" hasOnlySubstanceUnits="true" id="M_so2_c" metaid="_20457c4d-2162-49a6-807b-5e5f4d4227af" name="M_so2_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O" hasOnlySubstanceUnits="true" id="M_acald_p" metaid="_3d51ca32-ee50-4913-a791-0c41f0989c06" name="M_acald_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H4O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6NO4" hasOnlySubstanceUnits="true" id="M_2ogm_c" metaid="_5884f0fd-9263-47df-88ea-da40d9d374e3" name="M_2ogm_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H6NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N5O6S" hasOnlySubstanceUnits="true" id="M_amob_c" metaid="_1d835c16-17ae-4d73-93bb-36cb6d93ba15" name="S_Adenosyl_4_methylthio_2_oxobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H19N5O6S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O" hasOnlySubstanceUnits="true" id="M_acald_e" metaid="_0abd461f-9a15-4211-9311-ce43c62aab62" name="M_acald_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H4O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O" hasOnlySubstanceUnits="true" id="M_acald_c" metaid="_143625ae-b64c-4fb0-80f6-9efe13a7b9d0" name="Acetaldehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H4O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8N5O3" hasOnlySubstanceUnits="true" id="M_cph4_c" metaid="afd05253-971f-4a66-8b65-5ac1f306509d" name="6_carboxy_5_6_7_8_tetrahydropterin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H8N5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H24N2O16P2" hasOnlySubstanceUnits="true" id="M_dtdpglu_c" metaid="_0bba1122-5723-4fd3-8f21-e2e91020abec" name="dTDPglucose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H24N2O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O7PS" hasOnlySubstanceUnits="true" id="M_5mdr1p_c" metaid="_184f9078-bb7d-46cf-8a62-b5539976b76d" name="M_5mdr1p_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O7PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H89O7P2" hasOnlySubstanceUnits="true" id="M_udcpdp_c" metaid="ad0e2184-1624-418e-9618-17b79197331f" name="Undecaprenyl_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C55H89O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Mg" hasOnlySubstanceUnits="true" id="M_mg2_c" metaid="_8d2dc306-1ffd-4add-8283-c1b37704bcb9" name="Magnesium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Mg</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H21N7O7" hasOnlySubstanceUnits="true" id="M_5fthf_c" metaid="acdfb364-95bd-4e0e-a46f-f1920c900da7" name="5_Formyltetrahydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H21N7O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hcpalm9eACP_c" metaid="f543c9a3-fd16-4ccb-9272-7617c7a973f0" name="R__3_hydroxy_cis_palm_9_eoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H49N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H82NO8P" hasOnlySubstanceUnits="true" id="M_pe180_c" metaid="_4048579e-4f31-481a-947b-5325a88a525f" name="phosphatidylethanolamine__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C41H82NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="S4Fe4" hasOnlySubstanceUnits="true" id="M_4fe4s_c" metaid="_9b98389e-5f17-43b1-97af-987fda6edd76" name="4Fe_4S__iron_sulfur_cluster" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: S4Fe4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Mg" hasOnlySubstanceUnits="true" id="M_mg2_e" metaid="_6204c224-60fd-496c-ae7d-3a640cf96806" name="Magnesium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Mg</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O5" hasOnlySubstanceUnits="true" id="M_gsn_c" metaid="_675aea4f-9d89-4316-b21d-8835e7bdf088" name="Guanosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N5O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5O" hasOnlySubstanceUnits="true" id="M_gua_p" metaid="bd079a49-4a78-4596-b5a4-e1e2e0ce31a1" name="M_gua_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H5N5O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="S" hasOnlySubstanceUnits="true" id="M_s_c" metaid="_0abe441f-373f-44a8-a346-438e07c487ed" name="M_s_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="S" hasOnlySubstanceUnits="true" id="M_s_e" metaid="_02ce892b-ee70-4605-826f-fac5cfb92aa4" name="M_s_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H23N6O5S" hasOnlySubstanceUnits="true" id="M_amet_c" metaid="_05c3b996-37d0-476c-bd6b-8e86a72850b0" name="S_Adenosyl_L_methionine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H23N6O5S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C800H1302N100O501" hasOnlySubstanceUnits="true" id="M_chitin_polymer_e" metaid="_2f386823-86f0-417b-a5d8-4ddbd63d6fe5" name="M_chitin_polymer_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C800H1302N100O501</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H82NO8P" hasOnlySubstanceUnits="true" id="M_pe180_p" metaid="_4aa176f4-546c-4bce-bbbc-259d7819815a" name="phosphatidylethanolamine__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C41H82NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H12N3O7P" hasOnlySubstanceUnits="true" id="M_air_c" metaid="bafef441-55b1-482a-83ef-2628e0331c85" name="5_amino_1__5_phospho_D_ribosyl_imidazole" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H12N3O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H57N1O10P1" hasOnlySubstanceUnits="true" id="M_ps120_c" metaid="_7286fb91-0c02-49b2-9a94-7e458d73ae30" name="phosphatidylserine__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H57N1O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N2OR" hasOnlySubstanceUnits="true" id="M_lystrna_c" metaid="adb25803-b9e7-4b8b-a860-1b9ffd6ad032" name="L_Lysine_tRNA__Lys_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N2OR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5O" hasOnlySubstanceUnits="true" id="M_gua_e" metaid="b20f58dc-f884-461b-a907-84d41e230386" name="M_gua_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H5N5O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5O" hasOnlySubstanceUnits="true" id="M_gua_c" metaid="_8174d229-a534-4c7b-b1e1-9157c17c78fb" name="Guanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H5N5O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Mg" hasOnlySubstanceUnits="true" id="M_mg2_p" metaid="_3478a092-b7f3-4a06-b4b7-2932b0c98361" name="Magnesium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Mg</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2R" hasOnlySubstanceUnits="true" id="M_tyrtrna_c" metaid="_104ba3cc-a31b-4300-b87d-1d71d75e5eb4" name="L_Tyrosyl_tRNA_Tyr_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11NO2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H20N4O6" hasOnlySubstanceUnits="true" id="M_ribflv_c" metaid="_355d6a80-123c-435c-86bd-93b68e593626" name="Riboflavin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H20N4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H20N2O9PS" hasOnlySubstanceUnits="true" id="M_4ppcys_c" metaid="_2279bafc-1eda-409b-8625-74311a00675d" name="N___R__4_Phosphopantothenoyl__L_cysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H20N2O9PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H65O7P2" hasOnlySubstanceUnits="true" id="M_octdp_c" metaid="_699d66d7-799f-41db-829e-575eb4fd5124" name="all_trans_Octaprenyl_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C40H65O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N6O12S2" hasOnlySubstanceUnits="true" id="M_gthox_p" metaid="_26ddbc66-1814-4d9a-99fa-e789983744f4" name="Oxidized_glutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H30N6O12S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H7N2O3" hasOnlySubstanceUnits="true" id="M_4izp_c" metaid="_35b8c0ec-00e3-478a-8b32-e6ea450f48ca" name="4_Imidazolone_5_propanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H7N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5N4O3" hasOnlySubstanceUnits="true" id="M_cdg_c" metaid="ba9e8d8e-5f5a-4d46-a4eb-ee9bc01d6cc8" name="7_deaza_7_carboxyguanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5N4O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" hasOnlySubstanceUnits="true" id="M_BIOMASS_XF_c" metaid="_977000d3-3f7b-4a5e-9b66-f76349244748" name="M_BIOMASS_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C41.554061837540075H71.78553537948964N9.85382400884015O14.938244017389934P0.8811200258000156R1.27675647831893E-15Mn7.34919E-4Mo7.37685E-6Cl0.005532639K0.207473951Co2.67411E-5Cu7.53361E-4S0.24700915678000002Zn3.62388E-4Mg0.009221064Ni3.43024E-4Ca0.005532639Fe0.017346515399999998</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O6" hasOnlySubstanceUnits="true" id="M_2ins_c" metaid="_18dda0b7-ffe4-4fbe-bea5-0c48a7b1fba9" name="2_Inosose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H10O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H6NO2" hasOnlySubstanceUnits="true" id="M_4abz_c" metaid="c3252fbe-8ecb-4cea-a46e-72ae990ae870" name="4_Aminobenzoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H6NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N5O14P2" hasOnlySubstanceUnits="true" id="M_prbamp_c" metaid="_9b62d40a-b552-45b2-bcaa-e6abfc107cf8" name="1__5_Phosphoribosyl__AMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H19N5O14P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="MoO4" hasOnlySubstanceUnits="true" id="M_mobd_p" metaid="ddf06dd7-4534-41b4-b9f5-4bfa80feb7e8" name="Molybdate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: MoO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O2" hasOnlySubstanceUnits="true" id="M_ac_c" metaid="_9fa08c5e-81e9-4b89-bd09-002a3b6a40a1" name="Acetate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H3O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H89O7P2" hasOnlySubstanceUnits="true" id="M_udcpdp_p" metaid="a5341159-851e-4f2b-8b6c-1a0bef5d110f" name="Undecaprenyl_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C55H89O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O2" hasOnlySubstanceUnits="true" id="M_ac_e" metaid="b8c75f41-aa81-415f-adca-07a804537370" name="Acetate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H3O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O2S" hasOnlySubstanceUnits="true" id="M_mtpp_c" metaid="_5168e61b-5473-429a-af16-459b37a372fa" name="M_mtpp_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H7O2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45N2O9PRS" hasOnlySubstanceUnits="true" id="M_3omrsACP_c" metaid="b6f11f96-e986-4bb4-8cfa-769c56fd0286" name="3_Oxotetradecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H45N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N2O11" hasOnlySubstanceUnits="true" id="M_chtbs_e" metaid="bfff0b3d-04c2-4d68-be9f-36697be6f607" name="N_N_diacetylchitobiose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H28N2O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O5" hasOnlySubstanceUnits="true" id="M_cbasp_c" metaid="_1955851f-53a2-41d8-810e-c6a10d53f245" name="N_Carbamoyl_L_aspartate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H6N2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N2O11" hasOnlySubstanceUnits="true" id="M_chtbs_c" metaid="_95bfee1b-96ad-46c3-ad16-1dec0a80adde" name="N_N_diacetylchitobiose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H28N2O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H20NO6P" hasOnlySubstanceUnits="true" id="M_g3pc_c" metaid="_618ce2bf-2ed0-4cb8-aaa2-7c81d5cc9570" name="sn_Glycero_3_phosphocholine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H20NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69O13P2" hasOnlySubstanceUnits="true" id="M_pgp161_c" metaid="_4c529996-78c3-4952-99e8-fba13ecc8f9f" name="Phosphatidylglycerophosphate__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H69O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="H2S" hasOnlySubstanceUnits="true" id="M_h2s_p" metaid="fae23ffb-3137-4836-bcf0-8783b4e71fdc" name="Hydrogen_sulfide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H20NO6P" hasOnlySubstanceUnits="true" id="M_g3pc_e" metaid="_3a4a7647-cc01-4b46-a0ed-e2caca8ae008" name="sn_Glycero_3_phosphocholine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H20NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23O2" hasOnlySubstanceUnits="true" id="M_ddca_e" metaid="_122ad39f-5de6-42b6-ba49-0c2c3585b9f4" name="Dodecanoate__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H23O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N2O11" hasOnlySubstanceUnits="true" id="M_chtbs_p" metaid="d8376137-fc3d-4416-9fda-76a02f848570" name="N_N_diacetylchitobiose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H28N2O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N2O18P2" hasOnlySubstanceUnits="true" id="M_udpgalur_c" metaid="_3e478232-7397-4d11-856d-df50f0daaac3" name="M_udpgalur_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H19N2O18P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H22N3" hasOnlySubstanceUnits="true" id="M_spmd_e" metaid="ff16cf44-82b1-4346-94e1-245b42443e1a" name="Spermidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H22N3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O3" hasOnlySubstanceUnits="true" id="M_glyc_p" metaid="_6c5d646c-4449-4507-ad71-ba318ebaf4df" name="Glycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H8O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O4" hasOnlySubstanceUnits="true" id="M_dcyt_c" metaid="e43f2edb-9189-4fbb-a1f9-430eb760eae3" name="Deoxycytidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H13N3O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23O2" hasOnlySubstanceUnits="true" id="M_ddca_c" metaid="c682527b-94e1-4c8a-87df-9517957f0965" name="Dodecanoate__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H23O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C68H102N12O37" hasOnlySubstanceUnits="true" id="M_murein3px3p_p" metaid="_476f5504-6060-4a5b-ba42-ea0c14f37e1a" name="two_disacharide_linked_murein_units__tripeptide_crosslinked_tripeptide__A2pm__A2pm___middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C68H102N12O37</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H115N2O30P2" hasOnlySubstanceUnits="true" id="M_kdolipid4_XF_c" metaid="_8f6f558e-3e61-4022-81a0-821f62a0529c" name="M_kdolipid4_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C64H115N2O30P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H22N3" hasOnlySubstanceUnits="true" id="M_spmd_c" metaid="_1bc902f1-27a8-40e4-ac43-2f6dadec93e3" name="Spermidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H22N3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O12P2" hasOnlySubstanceUnits="true" id="M_udp_c" metaid="_886d8581-de18-42c5-b2f3-5bd554ba92bd" name="UDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N2O12P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H53N2O8PRS" hasOnlySubstanceUnits="true" id="M_octeACP_c" metaid="_6fc1220a-b131-4747-81f2-970e39a8f3aa" name="cis_octadec_11_enoyl__acyl_carrier_protein___n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H53N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H3N2O4" hasOnlySubstanceUnits="true" id="M_orot_c" metaid="_9892e8f7-cd75-424c-9921-d2e5441a9bf2" name="Orotate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H3N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H22N3" hasOnlySubstanceUnits="true" id="M_spmd_p" metaid="_88096ddb-8776-4948-a7de-e0cf40e74b5d" name="Spermidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H22N3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N4O2" hasOnlySubstanceUnits="true" id="M_arg_L_c" metaid="_94c434a4-5a34-4449-8db4-853c81a64cc9" name="L_Arginine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N4O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H19N4O9P" hasOnlySubstanceUnits="true" id="M_fmn_c" metaid="_5ad4d4a7-2aa3-47bd-8e30-3d523930f1e9" name="FMN" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H19N4O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H22N4O6" hasOnlySubstanceUnits="true" id="M_rbflvrd_c" metaid="a6e8fe44-0f41-4834-91f6-6edf74df2da0" name="M_rbflvrd_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H22N4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N4O2" hasOnlySubstanceUnits="true" id="M_arg_L_e" metaid="_0c8316dc-3ba0-49d6-a957-aae85d9e7cad" name="L_Arginine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N4O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69O13P2" hasOnlySubstanceUnits="true" id="M_pgp161_p" metaid="a0da53b8-c792-41ba-8484-f4ec21057617" name="Phosphatidylglycerophosphate__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H69O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O3" hasOnlySubstanceUnits="true" id="M_glyc_c" metaid="_9df2aff8-e262-4ebe-9101-31dd63ea3f87" name="Glycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H8O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N5O20P4" hasOnlySubstanceUnits="true" id="M_prbatp_c" metaid="f7a1bbc2-1d49-4a51-969c-3e4ea072aa16" name="1__5_Phosphoribosyl__ATP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H19N5O20P4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O11P2" hasOnlySubstanceUnits="true" id="M_cdp_c" metaid="_12dfc747-9d1d-42fc-8415-cef561969dd8" name="CDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N3O11P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O3" hasOnlySubstanceUnits="true" id="M_glyc_e" metaid="_36ac6ef4-5949-4647-ae8e-7d19fdfdb042" name="Glycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H8O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O4" hasOnlySubstanceUnits="true" id="M_pant_R_c" metaid="ba5bdbf6-327c-4868-bdb6-05e79154bf88" name="R__Pantoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N4O2" hasOnlySubstanceUnits="true" id="M_arg_L_p" metaid="e75fff8e-1303-4870-b151-b37a796d810c" name="L_Arginine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N4O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H62O10P1" hasOnlySubstanceUnits="true" id="M_pg141_c" metaid="_396efca1-3737-4da9-801b-835aba9e0d3b" name="Phosphatidylglycerol__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H62O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H3N2O4" hasOnlySubstanceUnits="true" id="M_orot_p" metaid="f3256e54-e8cb-4076-a633-48b7d04e0753" name="Orotate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H3N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2" hasOnlySubstanceUnits="true" id="M_for_p" metaid="_94e1c75d-9258-432e-a9f0-c5510773ae4b" name="Formate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CHO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="O4S" hasOnlySubstanceUnits="true" id="M_so4_e" metaid="_75423fa7-d028-4ccd-87fd-e54fb68a549e" name="Sulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O4S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5O6" hasOnlySubstanceUnits="true" id="M_2mcacn_c" metaid="_0369c556-1309-46b7-911c-c8ae4028fa9e" name="cis_2_Methylaconitate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H71O8P1" hasOnlySubstanceUnits="true" id="M_pa181_p" metaid="_53a3581f-53a2-4327-bd2e-d961186629d2" name="1_2_dioctadec_11_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H71O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O4S" hasOnlySubstanceUnits="true" id="M_so4_c" metaid="_5d8acb70-ed97-4be9-8bf7-0924b2df4903" name="Sulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O4S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H3N2O4" hasOnlySubstanceUnits="true" id="M_orot_e" metaid="_2a2ef40d-c0e1-43a3-b035-3f8c6aad8341" name="Orotate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H3N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="O4S" hasOnlySubstanceUnits="true" id="M_so4_p" metaid="_0e3610ce-7c67-4912-b48c-247cfa74a857" name="Sulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O4S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="H2S" hasOnlySubstanceUnits="true" id="M_h2s_e" metaid="_2a472705-813d-43ca-bc43-a33f7afca219" name="Hydrogen_sulfide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H2S" hasOnlySubstanceUnits="true" id="M_h2s_c" metaid="ad954544-7662-42d5-800f-2f227ad2acaf" name="Hydrogen_sulfide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H71O8P1" hasOnlySubstanceUnits="true" id="M_pa181_c" metaid="_2726332e-0f8d-4091-a348-94bdb68d7b10" name="1_2_dioctadec_11_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H71O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21O14P" hasOnlySubstanceUnits="true" id="M_tre6p_c" metaid="_1a6fc82e-1e0c-4fc2-99eb-4550d4c85a83" name="alpha_alpha__Trehalose_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H21O14P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O7P" hasOnlySubstanceUnits="true" id="M_dxyl5p_c" metaid="f1d8ed1b-b19b-4fde-8fcd-c8e21723c2b3" name="1_deoxy_D_xylulose_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H62O10P1" hasOnlySubstanceUnits="true" id="M_pg141_p" metaid="_2a7a19c8-9350-4c9e-a897-932010c24e8e" name="Phosphatidylglycerol__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H62O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5" hasOnlySubstanceUnits="true" id="M_ade_p" metaid="_88c0f2d2-4508-4acc-bf5f-a0d5b625e467" name="Adenine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H5N5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O2" hasOnlySubstanceUnits="true" id="M_his_L_p" metaid="d0fff8a7-0697-486a-bf94-43f3a5b74cba" name="L_Histidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9N3O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C63H103O11N1P2" hasOnlySubstanceUnits="true" id="M_f2Nappudp_c" metaid="bb9d8548-b26d-4f7a-b0d4-1f504d604de4" name="M_f2Nappudp_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C63H103O11N1P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_fru_p" metaid="_69c8f14d-d64c-4d8c-9a77-25967c14aa76" name="D_Fructose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H2NO2" hasOnlySubstanceUnits="true" id="M_dhgly_c" metaid="_7254c1c8-5a1c-4d57-8589-aeecd451abfd" name="M_dhgly_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H2NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H66N1O8P1" hasOnlySubstanceUnits="true" id="M_pe140_c" metaid="_8245318c-ed8c-49d2-84fc-e779a60f1962" name="phosphatidylethanolamine__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C33H66N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O2" hasOnlySubstanceUnits="true" id="M_his_L_e" metaid="_8f084f1e-30e1-4cb4-bcb6-460cd5e20606" name="L_Histidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9N3O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O2" hasOnlySubstanceUnits="true" id="M_his_L_c" metaid="_61773072-1fb7-4ec7-ac8f-2390ada500aa" name="L_Histidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9N3O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O12P2" hasOnlySubstanceUnits="true" id="M_fdp_c" metaid="_6ccf20bf-c7be-4f81-a98e-3f4d6b73a91c" name="D_Fructose_1_6_bisphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H10O12P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C111H169N21O59" hasOnlySubstanceUnits="true" id="M_murein4px4p4p_p" metaid="_4cb12875-094c-41d1-94ff-bc20d2e0fbd7" name="three_disacharide_linked_murein_units__tetrapeptide_crosslinked_tetrapeptide__A2pm__D_ala___one_uncrosslinked_tetrapaptide___middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C111H169N21O59</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H73N1O10P1" hasOnlySubstanceUnits="true" id="M_ps160_c" metaid="b76187c5-3735-4406-9f26-251c7ca293bc" name="phosphatidylserine__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H73N1O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H66N1O8P1" hasOnlySubstanceUnits="true" id="M_pe140_p" metaid="bf97d63f-337c-4ba2-a1db-c9d2ed5dfe73" name="phosphatidylethanolamine__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C33H66N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H7O5" hasOnlySubstanceUnits="true" id="M_3dhsk_c" metaid="_041d6376-f95e-45b0-9bdd-fac22a1cf373" name="3_Dehydroshikimate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H7O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14N3O4" hasOnlySubstanceUnits="true" id="M_accitr_c" metaid="b0c01965-2d7a-4351-9104-cb4d34ab2630" name="M_accitr_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H14N3O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O13P3" hasOnlySubstanceUnits="true" id="M_ditp_c" metaid="dfef8771-f0e8-476f-84ae-980d23f32ed1" name="dITP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N4O13P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N5O4" hasOnlySubstanceUnits="true" id="M_thbpt4acam_c" metaid="f1c18f41-2bc6-4b31-b2ec-468cb38d0dca" name="Tetrahydrobiopterin_4a_carbinolamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H15N5O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C65H124O17P2" hasOnlySubstanceUnits="true" id="M_clpn140_p" metaid="d976ebdc-3b64-4c21-b18c-e8002752fbda" name="cardiolipin__tetratetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C65H124O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C34FeH30N4O4" hasOnlySubstanceUnits="true" id="M_pheme_e" metaid="_3b4e271f-4b4f-46be-b161-64021c86a3fd" name="M_pheme_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34FeH30N4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O8P" hasOnlySubstanceUnits="true" id="M_ohpb_c" metaid="_43cfdd25-bc13-446b-b54b-1c3ecd101f70" name="2_Oxo_3_hydroxy_4_phosphobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H24N3O15P" hasOnlySubstanceUnits="true" id="M_ckdo_c" metaid="_7358cc12-80df-4e0c-938a-3256918f1736" name="CMP_3_deoxy_D_manno_octulosonate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H24N3O15P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3" hasOnlySubstanceUnits="true" id="M_thr_L_p" metaid="ef6fc25f-dc22-448e-ac56-09bb7cd71dd7" name="L_Threonine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HSR" hasOnlySubstanceUnits="true" id="M_iscs_c" metaid="_22cb5b73-fbba-4c16-a2ed-1e9242363b30" name="IscS_sulfur_acceptor_protein" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HSR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13N2O5S" hasOnlySubstanceUnits="true" id="M_glucys_c" metaid="f236c86d-42fa-4142-b0e7-d89e523011c4" name="gamma_L_Glutamyl_L_cysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H13N2O5S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2OR" hasOnlySubstanceUnits="true" id="M_trptrna_c" metaid="_0529dcc8-2336-4478-a8e2-4e0f631fa51b" name="L_Tryptophanyl_tRNA_Trp_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12N2OR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15O" hasOnlySubstanceUnits="true" id="M_octapb_c" metaid="f7686454-00d0-42f2-b814-35f5295d8038" name="octanoate__protein_bound_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H15O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34FeH30N4O4" hasOnlySubstanceUnits="true" id="M_pheme_c" metaid="_1abc66e7-59fa-40cd-88c1-4242cf1fa425" name="Protoheme" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34FeH30N4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H3N" hasOnlySubstanceUnits="true" id="M_nh3_c" metaid="b86d4940-5cb3-4099-971b-2bcc661b41b7" name="M_nh3_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H3N</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_fru_e" metaid="_4cb9c971-bd9c-48a4-a844-7414f11e8932" name="D_Fructose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45N2O8PRS" hasOnlySubstanceUnits="true" id="M_tmrs2eACP_c" metaid="c4c1e4fd-5a97-403f-916f-593ac932e591" name="trans_Tetradec_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H45N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H14NO6P" hasOnlySubstanceUnits="true" id="M_g3pe_p" metaid="_57754263-bd27-4ea0-b4c9-9a119d3c8eed" name="sn_Glycero_3_phosphoethanolamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H14NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5" hasOnlySubstanceUnits="true" id="M_ade_e" metaid="_52f357c9-6dc1-429d-ad0d-51c134be17ad" name="Adenine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H5N5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H35N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hoctACP_c" metaid="_4f206e71-6854-4ada-8bf4-c315e03c6c74" name="R__3_Hydroxyoctanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H35N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5" hasOnlySubstanceUnits="true" id="M_ade_c" metaid="_400eef5a-a6b2-4fda-bfb1-350215ef981e" name="Adenine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H5N5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_tag6p_D_c" metaid="_2fdadae5-7512-4e34-a916-92f11dfbc22d" name="M_tag6p_D_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H24N3" hasOnlySubstanceUnits="true" id="M_na15dap_c" metaid="_64ba78a0-186c-45a2-b118-8ec27de6bd9e" name="M_na15dap_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H24N3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7N" hasOnlySubstanceUnits="true" id="M_pheacnit_c" metaid="cfd55262-5b07-4537-8d4f-7589f090f6c0" name="Phenylacetonitrile" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H7N</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6O8P" hasOnlySubstanceUnits="true" id="M_4per_c" metaid="_1f658f0f-13bc-4762-bb3d-5ab2ea667f37" name="4_Phospho_D_erythronate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H6O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H56N7O17P3S" hasOnlySubstanceUnits="true" id="M_tdecoa_c" metaid="_0e92c27a-f47c-4a45-adce-07b0220da4af" name="Tetradecenoyl_CoA__n_C14_1CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H56N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O9P2" hasOnlySubstanceUnits="true" id="M_2mecdp_c" metaid="_65745c5a-9ad9-4206-88c7-5d4a1d556609" name="2_C_methyl_D_erythritol_2_4_cyclodiphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O9P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H14NO6P" hasOnlySubstanceUnits="true" id="M_g3pe_c" metaid="_904be4a7-e1c6-4224-901a-ee9c05f9bd13" name="sn_Glycero_3_phosphoethanolamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H14NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H14NO6P" hasOnlySubstanceUnits="true" id="M_g3pe_e" metaid="_5163c9e9-c52c-43a2-aa1d-5212aa0df27f" name="sn_Glycero_3_phosphoethanolamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H14NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9O3" hasOnlySubstanceUnits="true" id="M_tmoxdpq_c" metaid="_5dc181bf-7b30-4e56-a32b-2125c3f403ac" name="tetramethoxydiphenylquinone" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H9O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N6O12S2Se" hasOnlySubstanceUnits="true" id="M_dgslnt_c" metaid="a265ea4f-bf5e-4aca-8bca-8b5d5c1a15d4" name="M_dgslnt_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H30N6O12S2Se</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H38N4O17" hasOnlySubstanceUnits="true" id="M_hmbil_c" metaid="_12277419-30ac-46b8-a5c0-7da316ff20ec" name="Hydroxymethylbilane" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C40H38N4O17</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13N2O9P" hasOnlySubstanceUnits="true" id="M_fgam_c" metaid="_6f4ac80f-34f4-49cf-97d7-f2a191e7f6bd" name="N2_Formyl_N1__5_phospho_D_ribosyl_glycinamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H13N2O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_L_c" metaid="_4ce2e4aa-b2df-43a7-8dca-aed5ebdf3607" name="L_Cysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_L_e" metaid="_46466521-2bd4-405a-a792-7e71ccb6e2a2" name="L_Cysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="X" hasOnlySubstanceUnits="true" id="M_dsbgox_p" metaid="_3ccba35c-1507-4ef0-beb4-8e449643c06b" name="M_dsbgox_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: X</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NOR" hasOnlySubstanceUnits="true" id="M_leutrna_c" metaid="_5a4d57a8-8d7d-4c7c-b513-ba3118976bde" name="L_Leucyl_tRNA_Leu_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NOR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H13NO9P" hasOnlySubstanceUnits="true" id="M_2cpr5p_c" metaid="b943f4bf-1162-4b51-971c-2b5ca8356d8b" name="1__2_Carboxyphenylamino__1_deoxy_D_ribulose_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H13NO9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43N2O8PRS" hasOnlySubstanceUnits="true" id="M_t3c7mrseACP_c" metaid="f3aeb5ef-5d98-4c04-83cf-f75440550e36" name="trans_3_cis_7_myristoleoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H43N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34FeH30N4O4" hasOnlySubstanceUnits="true" id="M_pheme_p" metaid="_026945df-54db-48df-be4f-6d32c2a30bc4" name="M_pheme_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34FeH30N4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C57H108O17P2" hasOnlySubstanceUnits="true" id="M_clpn120_p" metaid="eadfade5-58ca-408e-a1e6-177a0f674584" name="cardiolipin__tetradodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C57H108O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H24N6O3S" hasOnlySubstanceUnits="true" id="M_ametam_c" metaid="_90a70698-c4fd-42d3-a190-fce1e543592b" name="S_Adenosylmethioninamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H24N6O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17N4O6" hasOnlySubstanceUnits="true" id="M_argsuc_c" metaid="_548dad0d-e810-4e0c-916f-533710098c69" name="N_omega___L_Arginino_succinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H17N4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H57N7O20" hasOnlySubstanceUnits="true" id="M_anhgm4p_p" metaid="ef437769-d96e-486c-a0ac-7675c9c1f6b6" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tetrapeptide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H57N7O20</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8NO6P" hasOnlySubstanceUnits="true" id="M_pydx5p_c" metaid="a265d20f-239c-4f2b-96e4-47806c52cb44" name="Pyridoxal_5__phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H8NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H63N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdddecg_c" metaid="_5e0de559-0d9f-4aef-bea2-0424d18015d3" name="CDP_1_2_didodecanoylglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C36H63N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H39N5O14" hasOnlySubstanceUnits="true" id="M_anhm3p_c" metaid="_09dfe524-bbda-4378-a739-2054adc3159d" name="1_6_anhydrous_N_Acetylmuramyl_tripeptide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C26H39N5O14</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N3O7P2" hasOnlySubstanceUnits="true" id="M_2mahmp_c" metaid="_8f0c1114-c946-4418-90a9-839ab1169ae7" name="2_Methyl_4_amino_5_hydroxymethylpyrimidine_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H8N3O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H57N7O20" hasOnlySubstanceUnits="true" id="M_anhgm4p_c" metaid="ea3dd031-aa5c-47ed-910a-0abf1490feef" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tetrapeptide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H57N7O20</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_xu5p_L_c" metaid="_23436539-9e41-4a4d-a6d2-81cd76e0feb0" name="M_xu5p_L_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8O3S" hasOnlySubstanceUnits="true" id="M_4met2obut_c" metaid="_368e95c1-6823-484a-9e7b-8cf21f3f3edb" name="M_4met2obut_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43N2O8PRS" hasOnlySubstanceUnits="true" id="M_ddcaACP_c" metaid="a40a1259-338c-48b2-806e-4b8876626406" name="Dodecanoyl_ACP__n_C12_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H43N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H34N7O17P3S" hasOnlySubstanceUnits="true" id="M_accoa_c" metaid="dc821adc-7533-46fc-b79a-b053bc224359" name="Acetyl_CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H34N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H28N9O13P3S" hasOnlySubstanceUnits="true" id="M_athtp_c" metaid="_14063840-dfe8-4359-ad41-296aff807402" name="M_athtp_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C22H28N9O13P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_man_e" metaid="ea9e4baf-ac95-4edd-9e5f-f6af023440fd" name="M_man_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnatrp_c" metaid="_4133f28a-dc52-4412-a730-8785003f0495" name="tRNA_Trp_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Cd" hasOnlySubstanceUnits="true" id="M_cd2_p" metaid="_68615065-261f-4adb-90dd-4169baae9fee" name="Cadmium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cd</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43O25P" hasOnlySubstanceUnits="true" id="M_EPS_XF_p" metaid="_1425e0c1-5151-429b-82d0-690b4ac59ccc" name="M_EPS_XF_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C26H43O25P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_man_p" metaid="f7ff6e43-be3c-438a-8e9b-65925ce6ea46" name="M_man_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8N5O8P2" hasOnlySubstanceUnits="true" id="M_6hmhptpp_c" metaid="_409c710f-29d6-4d07-b8f4-d87df02cb571" name="6_hydroxymethyl_dihydropterin_pyrophosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H8N5O8P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N4O3" hasOnlySubstanceUnits="true" id="M_alltn_c" metaid="_47bab33a-0766-4505-87e4-28d8a330b249" name="Allantoin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H6N4O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Cd" hasOnlySubstanceUnits="true" id="M_cd2_e" metaid="_44d6e309-8a37-487d-99c4-d0bdb19e9ec2" name="Cadmium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cd</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O6" hasOnlySubstanceUnits="true" id="M_uri_c" metaid="f8983947-5a36-4518-b9bf-e2aef0578fdd" name="Uridine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N2O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2NO5P" hasOnlySubstanceUnits="true" id="M_cbp_c" metaid="b1c48880-7eb1-4123-981b-4ee1cea764b5" name="Carbamoyl_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH2NO5P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Cd" hasOnlySubstanceUnits="true" id="M_cd2_c" metaid="_4eed35d5-b595-421f-adaf-11b88f15f818" name="Cadmium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cd</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2HO3" hasOnlySubstanceUnits="true" id="M_glx_c" metaid="_674c32f1-edd7-40d6-a8bd-5f6faae95194" name="Glyoxylate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2HO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_L_p" metaid="b7003694-442e-48bd-a6fd-13dbdfd3041b" name="L_Cysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8O8P" hasOnlySubstanceUnits="true" id="M_skm5p_c" metaid="_61c0b10c-e2ef-43ea-9718-a86f1544ca6e" name="M_skm5p_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H8O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C96H172N2O41P2" hasOnlySubstanceUnits="true" id="M_kdo2lipidA_XF_p" metaid="_1099b2b6-5b56-4daa-b70e-9a2872702c32" name="M_kdo2lipidA_XF_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C96H172N2O41P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_g1p_c" metaid="f0b1a5ef-33c9-4a08-92b5-7871d31dfeec" name="D_Glucose_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N2O15P2" hasOnlySubstanceUnits="true" id="M_dtdp4d6dm_c" metaid="_2a63a7ff-a67f-4f69-b544-8a572a3bc467" name="dTDP_4_dehydro_6_deoxy_L_mannose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H22N2O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C96H172N2O41P2" hasOnlySubstanceUnits="true" id="M_kdo2lipidA_XF_c" metaid="_502ee221-f070-45a1-b54b-0c150d3ff782" name="M_kdo2lipidA_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C96H172N2O41P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21O14P" hasOnlySubstanceUnits="true" id="M_suc6p_c" metaid="_7253893e-3747-45d3-a25b-3efa6dbb7ecb" name="Sucrose_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H21O14P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H74O4" hasOnlySubstanceUnits="true" id="M_2omhmbl_c" metaid="f209ff94-a4fd-4bf0-a0b0-794f2dc7026f" name="2_Octaprenyl_3_methyl_5_hydroxy_6_methoxy_1_4_benzoquinol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C48H74O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C96H172N2O41P2" hasOnlySubstanceUnits="true" id="M_kdo2lipidA_XF_e" metaid="_69303646-b652-47d7-b28c-a06b743379f5" name="M_kdo2lipidA_XF_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C96H172N2O41P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C77H139N2O38P3" hasOnlySubstanceUnits="true" id="M_hphhlipidA_XF_c" metaid="_3e5799d3-05f9-4a49-96cc-7de3d1cc505c" name="M_hphhlipidA_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C77H139N2O38P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O5" hasOnlySubstanceUnits="true" id="M_duri_c" metaid="_34107222-3dde-46bf-9616-4a1acfd462f1" name="Deoxyuridine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc2p_p" metaid="_57e43951-ed1a-4e31-820d-96d129a5db07" name="Glycerol_2_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H41N2O8PRS" hasOnlySubstanceUnits="true" id="M_tddec2eACP_c" metaid="_59c66f20-37e6-4161-8b60-c809a99967cb" name="trans_Dodec_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H41N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnagln_c" metaid="dfb26a16-0150-4829-98dd-75d71683c2c5" name="tRNA_Gln_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H27FeN3O15" hasOnlySubstanceUnits="true" id="M_feenter_e" metaid="_06f569a1-82b1-43b5-b046-026c0df888af" name="M_feenter_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H27FeN3O15</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O4S2R4" hasOnlySubstanceUnits="true" id="M_trdox_c" metaid="cf02ed71-77c9-4b39-80b2-51932a2f7eca" name="Oxidized_thioredoxin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N4O4S2R4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O8P" hasOnlySubstanceUnits="true" id="M_g3pg_p" metaid="e47dbb18-e115-41f7-9384-3cc6a6e3458c" name="Glycerophosphoglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H14O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H29O2" hasOnlySubstanceUnits="true" id="M_hdcea_p" metaid="_90416f38-abc8-4831-829d-60e30cc03e11" name="Hexadecenoate__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H29O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43O25P" hasOnlySubstanceUnits="true" id="M_EPS_XF_e" metaid="_2dac150b-c2bc-4097-92ab-2c0d40f43e0b" name="M_EPS_XF_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C26H43O25P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc2p_e" metaid="e1acabc2-2018-4e6b-97d6-976018236dfe" name="Glycerol_2_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H27FeN3O15" hasOnlySubstanceUnits="true" id="M_feenter_p" metaid="_9c8ce71a-2f18-4327-ad3f-83dd1397a99c" name="M_feenter_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H27FeN3O15</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H7O3" hasOnlySubstanceUnits="true" id="M_phpyr_c" metaid="a97a873d-235e-43f9-8f4f-ccc996e10f53" name="Phenylpyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H7O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hdecACP_c" metaid="_7df5fb06-d0db-476d-ab24-9362bd3fbfaf" name="S__3_Hydroxydecanoyl__acyl_carrier_protein" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H39N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43O25P" hasOnlySubstanceUnits="true" id="M_EPS_XF_c" metaid="_4ec00c07-8dd8-42fd-8e51-fae404b3a71b" name="M_EPS_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C26H43O25P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc2p_c" metaid="_88c71068-60b9-4b38-88fe-4ea34f0dac5a" name="Glycerol_2_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23O2" hasOnlySubstanceUnits="true" id="M_ddca_p" metaid="_4d96532d-03b0-4b58-887f-70241760ab8b" name="Dodecanoate__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H23O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2S" hasOnlySubstanceUnits="true" id="M_hcys_L_c" metaid="_4cf57846-c9a4-42d7-9458-b50552789a85" name="L_Homocysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14N2O5" hasOnlySubstanceUnits="true" id="M_thymd_c" metaid="_0ae5c203-0786-41f7-9cc0-7b9349cf63a2" name="Thymidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H14N2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Cl" hasOnlySubstanceUnits="true" id="M_cl_p" metaid="a85023b1-6044-4628-88e4-6505990be08b" name="Chloride" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cl</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HSR" hasOnlySubstanceUnits="true" id="M_sufse_c" metaid="c65b45a3-b9bd-4356-be1d-95a6ad9649b2" name="M_sufse_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HSR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O7P" hasOnlySubstanceUnits="true" id="M_3pg_c" metaid="_7c850fdc-7ee4-4131-8713-1c4e7db33ef9" name="3_Phospho_D_glycerate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H4O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="RH2" hasOnlySubstanceUnits="true" id="M_etfrd_c" metaid="bc7d1494-f2e3-4392-a6b4-20e2abdfe54f" name="Electron_transfer_flavoprotein_reduced" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: RH2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49N2O9PRS" hasOnlySubstanceUnits="true" id="M_3opalmACP_c" metaid="d03ccd95-0ad8-40a6-99ec-cff5d909c168" name="3_Oxohexadecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H49N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38N7O18P3S" hasOnlySubstanceUnits="true" id="M_r3hbcoa_c" metaid="_7091ffad-7925-4b77-97de-67b2358b790e" name="R__3_Hydroxybutanoyl_CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H38N7O18P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H21N5O14P2" hasOnlySubstanceUnits="true" id="M_adprib_c" metaid="_8447d936-9b96-4794-adad-6e64e8be25e9" name="ADPribose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H21N5O14P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H25N3O17P2" hasOnlySubstanceUnits="true" id="M_uacmam_c" metaid="_87ee04d6-6c04-42fb-99a4-635593f51ae1" name="UDP_N_acetyl_D_mannosamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H25N3O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N2O16P2" hasOnlySubstanceUnits="true" id="M_udpxyl_c" metaid="_121290d7-eee1-43b4-9cc3-5cac99592dba" name="UDP_D_xylose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H20N2O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H105N2O20P" hasOnlySubstanceUnits="true" id="M_lipidAds_XF_c" metaid="fdd44c49-62fd-40fe-a8f0-de3f2a5cf27f" name="M_lipidAds_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C56H105N2O20P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6" hasOnlySubstanceUnits="true" id="M_acgam_c" metaid="_929cca87-4c08-439f-8e38-8d760db037eb" name="N_Acetyl_D_glucosamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H15NO6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H44N6O15" hasOnlySubstanceUnits="true" id="M_anhm4p_c" metaid="_55dc95a9-9c90-4e47-ac05-b51200af8681" name="1_6_anhydrous_N_Acetylmuramyl_tetrapeptide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H44N6O15</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8NO2" hasOnlySubstanceUnits="true" id="M_ind3ac_c" metaid="c05f427b-cebf-48fc-881b-2db18a86688c" name="Indole_3_acetate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H8NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Cl" hasOnlySubstanceUnits="true" id="M_cl_e" metaid="_8de57525-7850-4331-955a-593d97aa5cd9" name="Chloride" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cl</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8NO7P" hasOnlySubstanceUnits="true" id="M_phthr_c" metaid="_688ae74e-7e6c-444f-8ac7-ef9a56c07efc" name="O_Phospho_4_hydroxy_L_threonine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H8NO7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H41N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hcddec5eACP_c" metaid="e8ad6c5c-ffcf-4c14-bf13-617ce96feeaa" name="R__3_hydroxy_cis_dodec_5_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H41N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H7NO4" hasOnlySubstanceUnits="true" id="M_thdp_c" metaid="_1b78ecb9-a1be-43a5-9061-6b31d460fca8" name="2_3_4_5_Tetrahydrodipicolinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H7NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C73H140O17P2" hasOnlySubstanceUnits="true" id="M_clpn160_p" metaid="be613459-f8dd-4b09-893a-2559577ca2fe" name="cardiolipin__tetrahexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C73H140O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6" hasOnlySubstanceUnits="true" id="M_acgam_p" metaid="ebd83331-b18c-41b4-a44b-059dcf479c03" name="M_acgam_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H15NO6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H29N2O8PRS" hasOnlySubstanceUnits="true" id="M_thex2eACP_c" metaid="e378c6d1-fb50-4d2c-be3f-7d9d0026a9d0" name="trans_Hex_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H29N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H41N4O16" hasOnlySubstanceUnits="true" id="M_dscl_c" metaid="ea6c4aa1-cc4d-4ada-87f2-809ebb395fa8" name="dihydrosirohydrochlorin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H41N4O16</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H127N2O32P3" hasOnlySubstanceUnits="true" id="M_phhlipidA_XF_c" metaid="c96f56b7-b608-43d3-a6a1-356c9ba4b3e0" name="M_phhlipidA_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C70H127N2O32P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N5O13P2S" hasOnlySubstanceUnits="true" id="M_paps_c" metaid="f209ccf7-0a4e-4739-a0cd-7b1df95736a6" name="3__Phosphoadenylyl_sulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N5O13P2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5O2" hasOnlySubstanceUnits="true" id="M_bz_c" metaid="ae1c7a8d-8097-40e1-8dac-f56ed8b8c459" name="Benzoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O13P3" hasOnlySubstanceUnits="true" id="M_dgtp_c" metaid="_02b8aea4-dd62-45c1-8ee6-2ed83d65c1a7" name="dGTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O13P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H60O5" hasOnlySubstanceUnits="true" id="M_12dgr140_p" metaid="aba63d0f-24a8-409d-850d-51ff5ed4bb19" name="M_12dgr140_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H60O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10NO6P" hasOnlySubstanceUnits="true" id="M_pdx5p_c" metaid="_8c22f1f8-8834-4467-9706-e5cf85181be4" name="Pyridoxine_5__phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H10NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N5O8P1X" hasOnlySubstanceUnits="true" id="M_moadamp_c" metaid="_1673f815-08ff-48a9-a6c1-7fce124ac8f8" name="MoaD_Protein_with_bound_AMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12N5O8P1X</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5O2" hasOnlySubstanceUnits="true" id="M_bz_p" metaid="_4c50d908-be09-41cc-bd87-d9e77149cd86" name="M_bz_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O7P" hasOnlySubstanceUnits="true" id="M_dimp_c" metaid="_4847f1ea-fbe8-46a0-b954-d777099b14f5" name="dIMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N4O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_r1p_c" metaid="c51fe663-a96c-4d5f-b044-fd55cadbf789" name="alpha_D_Ribose_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H42N3O18P2" hasOnlySubstanceUnits="true" id="M_u3hga_XF_c" metaid="_8688a4a6-3274-4c07-b155-4025fa339e4e" name="M_u3hga_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H42N3O18P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O10P2" hasOnlySubstanceUnits="true" id="M_adp_c" metaid="_2c5d4c58-1d75-4ae1-885b-ca295055afa8" name="ADP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O10P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5O2" hasOnlySubstanceUnits="true" id="M_bz_e" metaid="_50d58e18-184f-4feb-a6bb-b7f585abcda2" name="M_bz_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C71H113N2O18P2" hasOnlySubstanceUnits="true" id="M_unagamu_c" metaid="_9d0cf216-7876-451e-a63a-64554bdc32c4" name="M_unagamu_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C71H113N2O18P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10NO2S" hasOnlySubstanceUnits="true" id="M_met_D_e" metaid="_0c467055-569b-4120-a154-eb8045b1652b" name="M_met_D_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10NO2S" hasOnlySubstanceUnits="true" id="M_met_D_c" metaid="_4742ba11-749b-45ba-831f-6756fc3f2680" name="M_met_D_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21N2O7PS" hasOnlySubstanceUnits="true" id="M_pan4p_c" metaid="b39ca11a-6517-469c-838a-d90ebfc77437" name="Pantetheine_4__phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H21N2O7PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O9P" hasOnlySubstanceUnits="true" id="M_ump_c" metaid="_52592ef6-e980-4115-a0ce-3be62c414f22" name="UMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N2O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O" hasOnlySubstanceUnits="true" id="M_hxan_p" metaid="_43301271-49c5-439a-b48c-343af7c883ec" name="Hypoxanthine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H4N4O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14NO9P" hasOnlySubstanceUnits="true" id="M_acgam1p_c" metaid="ee099462-057f-40f2-9318-435b77e02ac5" name="N_Acetyl_D_glucosamine_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H14NO9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C84H149N2O39P2" hasOnlySubstanceUnits="true" id="M_kdo2lipid4HL_XF_c" metaid="_5f10e95f-0f73-4cb4-86f8-a423a42e26b4" name="M_kdo2lipid4HL_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C84H149N2O39P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnasecys_c" metaid="_43e9e8dc-27a9-45c7-a846-a9806ffc5900" name="tRNA_SeCys_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N2O15P2" hasOnlySubstanceUnits="true" id="M_dtdp4d6dg_c" metaid="c3c4a7d9-e30f-4081-a77a-b0f5247d5e59" name="dTDP_4_dehydro_6_deoxy_D_glucose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H22N2O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H39N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ocddec5eACP_c" metaid="c3249e6e-3844-464e-912b-eaffa32b9b2e" name="3_oxo_cis_dodec_5_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H39N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H56O3" hasOnlySubstanceUnits="true" id="M_2hpmhobq_c" metaid="e92b21fa-04e6-4466-8e88-54b6da43b2ec" name="2_Hexaprenyl_3_methyl_6_methoxy_1_4_benzoquinone" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H56O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3" hasOnlySubstanceUnits="true" id="M_gln_L_c" metaid="f4a97e17-4cd4-4c44-a820-68d123b6536e" name="L_Glutamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3" hasOnlySubstanceUnits="true" id="M_gln_L_e" metaid="cb3178e8-82df-4bfc-9bd3-2225d4f2deae" name="L_Glutamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H33O2" hasOnlySubstanceUnits="true" id="M_ocdcea_e" metaid="c49ceefe-cbb1-4c1f-b2c9-7d2be26c1725" name="octadecenoate__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H33O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H70O10P1" hasOnlySubstanceUnits="true" id="M_pg161_c" metaid="_30287bb9-8205-4e45-936c-6b7ff079fb61" name="Phosphatidylglycerol__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H70O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H33O2" hasOnlySubstanceUnits="true" id="M_ocdcea_c" metaid="_80627c1f-2ab2-4b5e-b9ee-f3bace1053ad" name="M_ocdcea_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H33O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HS2R" hasOnlySubstanceUnits="true" id="M_sufsesh_c" metaid="_8a50d7ae-12e1-458b-bca1-41d50528128f" name="M_sufsesh_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HS2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H41O7P1" hasOnlySubstanceUnits="true" id="M_1odecg3p_c" metaid="bc7afb5b-a544-4ac5-b596-28d4f53b5a73" name="1_octadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H41O7P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O10PS" hasOnlySubstanceUnits="true" id="M_aps_c" metaid="e8f644aa-cf4e-4851-9b52-524f55800b88" name="Adenosine_5__phosphosulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O10PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Cl" hasOnlySubstanceUnits="true" id="M_cl_c" metaid="_460e0853-51f1-4911-9939-66ee68043783" name="Chloride" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cl</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Cu" hasOnlySubstanceUnits="true" id="M_cu2_e" metaid="fa22814a-ff48-4484-925b-60b9d589e426" name="Copper_2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cu</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10NO2S" hasOnlySubstanceUnits="true" id="M_met_D_p" metaid="_29bc905d-471c-422d-ac52-fb6b64907c9f" name="M_met_D_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Cu" hasOnlySubstanceUnits="true" id="M_cu2_c" metaid="_7f917db6-f623-4384-ae7d-b478ab60e6e9" name="Copper_2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cu</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O" hasOnlySubstanceUnits="true" id="M_hxan_c" metaid="d2e6ca98-7ed8-4c5b-9b61-fdd33de2e076" name="Hypoxanthine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H4N4O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H54N7O17P3S" hasOnlySubstanceUnits="true" id="M_ddcacoa_c" metaid="_108bae10-3aa7-4e54-955e-3f76398c8f5c" name="Dodecanoyl_CoA__n_C12_0CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C33H54N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H70O10P1" hasOnlySubstanceUnits="true" id="M_pg161_p" metaid="_40f2b6ec-e609-48b0-a490-7f91812458f9" name="Phosphatidylglycerol__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H70O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3" hasOnlySubstanceUnits="true" id="M_gln_L_p" metaid="_11575be7-e27d-4ba4-b151-c5045e19fccd" name="L_Glutamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Cu" hasOnlySubstanceUnits="true" id="M_cu2_p" metaid="_4a0f9fdb-ba9d-4617-b1f5-84637d786267" name="Copper_2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cu</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H33O2" hasOnlySubstanceUnits="true" id="M_ocdcea_p" metaid="accd4a8b-5987-440e-a077-9adbb463d0ea" name="octadecenoate__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H33O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O" hasOnlySubstanceUnits="true" id="M_hxan_e" metaid="aad41c36-39a2-4627-9de3-54ebb9a099c0" name="Hypoxanthine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H4N4O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H55N2O8PRS" hasOnlySubstanceUnits="true" id="M_ocdcaACP_c" metaid="a99cb6e9-3d7b-4418-8e12-3e3eadb5e4ac" name="Octadecanoyl_ACP__n_C18_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H55N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H67N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdtdec7eg_c" metaid="cfed38fb-a6aa-4c04-925b-a8ddecbef47f" name="CDP_1_2_ditetradec_7_enoylglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C40H67N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O7P" hasOnlySubstanceUnits="true" id="M_2pg_c" metaid="e70b8811-d6b0-4409-805b-b6cb4cbcc792" name="D_Glycerate_2_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H4O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H22N2O17P2" hasOnlySubstanceUnits="true" id="M_udpgal_c" metaid="ca9477b5-955c-4986-8dda-a59e550e5e7a" name="UDPgalactose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H22N2O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H29N2O10PRS" hasOnlySubstanceUnits="true" id="M_gmeACP_c" metaid="ddead12e-825c-49d7-aabf-988f35133766" name="Glutaryl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H29N2O10PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_inost_p" metaid="bdbe4468-697b-4df1-8745-7da05a39e022" name="myo_Inositol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H81N1O10P1" hasOnlySubstanceUnits="true" id="M_ps180_c" metaid="_8df23e87-1dbe-4a1a-aad2-a2499978d7bb" name="phosphatidylserine__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H81N1O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O2" hasOnlySubstanceUnits="true" id="M_thym_c" metaid="_78dcf97b-b64a-4383-8155-483beeb01f07" name="Thymine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H6N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12NO6P" hasOnlySubstanceUnits="true" id="M_3ig3p_c" metaid="_4794eeab-2b3a-4e86-947e-a3668dd50e19" name="C___3_Indolyl__glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H64N7O17P3S" hasOnlySubstanceUnits="true" id="M_odecoa_c" metaid="_09cf7336-e84b-4f05-badd-7be76bcbabe8" name="Octadecenoyl_CoA__n_C18_1CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H64N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N3O6S" hasOnlySubstanceUnits="true" id="M_gthrd_c" metaid="_6d318b97-a47e-49aa-87cc-3ad6fb676344" name="Reduced_glutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H16N3O6S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H4O2S10Fe4R" hasOnlySubstanceUnits="true" id="M_sufbcd_4fe4s_c" metaid="ef85ce8a-599c-49c2-b934-52d0e2f16d6c" name="M_sufbcd_4fe4s_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H4O2S10Fe4R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C68H104N12O38" hasOnlySubstanceUnits="true" id="M_murein3p3p_p" metaid="_9933264b-e15a-4ed1-a4f0-f4fc7c227565" name="two_linked_disacharide_tripeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C68H104N12O38</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H31O7P1" hasOnlySubstanceUnits="true" id="M_1tdec7eg3p_c" metaid="ab977643-263a-4a03-a254-bb852121a6e2" name="1_tetradec_7_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H31O7P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2" hasOnlySubstanceUnits="true" id="M_4abut_e" metaid="_83f27303-75f4-4d6e-8ac2-28eeb19db871" name="4_Aminobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3" hasOnlySubstanceUnits="true" id="M_5aop_c" metaid="a32ed875-f60f-4312-961c-01fc0b55d16b" name="5_Amino_4_oxopentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O2" hasOnlySubstanceUnits="true" id="M_thym_p" metaid="b8c96569-55bb-4c39-bfb6-94c7bdf53eda" name="M_thym_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H6N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O1" hasOnlySubstanceUnits="true" id="M_meoh_e" metaid="a3aecd07-6bf3-464b-8ac1-bdd59da7f49e" name="Methanol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH4O1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O1" hasOnlySubstanceUnits="true" id="M_meoh_c" metaid="_9890bb12-45ac-4f4d-a19a-fc811557ae3c" name="Methanol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH4O1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O3" hasOnlySubstanceUnits="true" id="M_dad_2_c" metaid="_90683926-b866-41fe-80c1-98babccbacf6" name="Deoxyadenosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H78O10P1" hasOnlySubstanceUnits="true" id="M_pg181_c" metaid="_8f92af48-2761-440e-9022-9d3fa1cbc681" name="Phosphatidylglycerol__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H78O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2" hasOnlySubstanceUnits="true" id="M_4abut_c" metaid="b71769b5-a14b-48f8-91d0-88bb3d343059" name="4_Aminobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O2" hasOnlySubstanceUnits="true" id="M_thym_e" metaid="_7f85071a-6a4f-43db-9823-8a031f2c7d41" name="M_thym_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H6N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H33N2O11PRS" hasOnlySubstanceUnits="true" id="M_hpmeACP_c" metaid="_94c28444-1421-443a-aba2-0691b5acec37" name="3_Hydroxypimeloyl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H33N2O11PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H112N14O39" hasOnlySubstanceUnits="true" id="M_murein4px4p_p" metaid="eeb327c2-4345-4f36-91b1-60518942ab25" name="two_disacharide_linked_murein_units__tetrapeptide_corsslinked_tetrapeptide__A2pm__D_ala___middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C74H112N14O39</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2" hasOnlySubstanceUnits="true" id="M_4abut_p" metaid="_7bbf70a8-f779-47ec-a17e-4c489edf91d3" name="4_Aminobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O1" hasOnlySubstanceUnits="true" id="M_meoh_p" metaid="d5cde6e6-4478-4de3-a0a9-0fef3954603c" name="Methanol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH4O1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H78O10P1" hasOnlySubstanceUnits="true" id="M_pg181_p" metaid="_12290258-af5c-47c1-979d-c45053f67323" name="Phosphatidylglycerol__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H78O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H37N2O8PRS" hasOnlySubstanceUnits="true" id="M_tdec2eACP_c" metaid="b40796b5-d9da-41e2-8108-7ab4fac80089" name="trans_Dec_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H37N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H72O2" hasOnlySubstanceUnits="true" id="M_2omph_c" metaid="_50c8fd8a-0b8d-4b9d-9f3f-7e73939896c7" name="2_Octaprenyl_6_methoxyphenol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C47H72O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H33N7O13P2S" hasOnlySubstanceUnits="true" id="M_dpcoa_c" metaid="_2114affe-c062-4904-a403-daf62352e50a" name="Dephospho_CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H33N7O13P2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="K" hasOnlySubstanceUnits="true" id="M_k_p" metaid="_215c8043-9dff-438d-a258-cec5f2bc47ac" name="potassium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: K</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5NO4" hasOnlySubstanceUnits="true" id="M_23dhdp_c" metaid="_752884b5-3ccf-4ce5-b928-ef740b225ab0" name="2_3_Dihydrodipicolinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11" hasOnlySubstanceUnits="true" id="M_lcts_p" metaid="f961f514-f854-4ab7-a243-2b378a11a89f" name="M_lcts_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H22O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H15N5O3S" hasOnlySubstanceUnits="true" id="M_5mta_c" metaid="cbac2a4e-49f7-48a8-9add-029ce811ba89" name="5_Methylthioadenosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H15N5O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H77O13P2" hasOnlySubstanceUnits="true" id="M_pgp181_c" metaid="_5f9ad7b0-8d3c-43cf-8a33-90e1eb710e57" name="Phosphatidylglycerophosphate__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H77O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H16N4O7P2S" hasOnlySubstanceUnits="true" id="M_thmpp_c" metaid="_30903d62-892f-48e3-a1c0-6b6a72280043" name="Thiamine_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H16N4O7P2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O7P" hasOnlySubstanceUnits="true" id="M_amp_c" metaid="_4fe6c29c-fecf-470c-be2a-a9bcf8656833" name="AMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H60O5" hasOnlySubstanceUnits="true" id="M_12dgr140_c" metaid="_7e1e6be4-b6d5-4044-b0b9-2f04b2bea97a" name="1_2_Diacyl_sn_glycerol__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H60O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2R" hasOnlySubstanceUnits="true" id="M_sertrna_c" metaid="_81f93249-c898-454e-98bd-866ce601f5ba" name="L_Seryl_tRNA_Ser_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H33N9O15P2" hasOnlySubstanceUnits="true" id="M_fadh2_c" metaid="_4041656b-e412-49f4-b816-7600ed0651ee" name="Flavin_adenine_dinucleotide_reduced" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H33N9O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11" hasOnlySubstanceUnits="true" id="M_lcts_c" metaid="_37a5c5d2-2f41-4400-b1e7-bcba04bb38d5" name="M_lcts_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H22O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N5O13P3" hasOnlySubstanceUnits="true" id="M_ahdt_c" metaid="_5035af71-197d-41f9-aa74-443f3358baaf" name="2_Amino_4_hydroxy_6__erythro_1_2_3_trihydroxypropyl_dihydropteridine_triphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N5O13P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O14P3" hasOnlySubstanceUnits="true" id="M_dutp_c" metaid="_80fe83ce-be12-4f96-a6f6-a17511a22de4" name="dUTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N2O14P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H37N2O9PRS" hasOnlySubstanceUnits="true" id="M_3odecACP_c" metaid="a34c0d26-e907-4875-baf3-7229d06e1f16" name="3_Oxodecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H37N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO8P" hasOnlySubstanceUnits="true" id="M_gam6p_c" metaid="f0da3ccb-33da-4fb1-ac90-d48b92df0746" name="D_Glucosamine_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H77O13P2" hasOnlySubstanceUnits="true" id="M_pgp181_p" metaid="af1769b8-8aed-4c2c-a532-e2aab8ffd559" name="Phosphatidylglycerophosphate__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H77O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H21N5O15P2" hasOnlySubstanceUnits="true" id="M_prfp_c" metaid="fa867997-62a0-40f2-99a3-cf71a1fa8319" name="1__5_Phosphoribosyl__5___5_phosphoribosylamino_methylideneamino_imidazole_4_carboxamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H21N5O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O4" hasOnlySubstanceUnits="true" id="M_succ_c" metaid="_474e6990-28d1-4ec8-9f01-356e9e7060cd" name="Succinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO8P" hasOnlySubstanceUnits="true" id="M_g3ps_p" metaid="_4f51406a-ef1b-4d16-9d37-94c2adea606c" name="Glycerophosphoserine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O4" hasOnlySubstanceUnits="true" id="M_succ_p" metaid="_37f6347d-7051-42e9-a560-40c4bf52c173" name="Succinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_gal_p" metaid="fa6238b5-6319-4f16-8851-65f593e11a36" name="D_Galactose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N3O6S" hasOnlySubstanceUnits="true" id="M_gthrd_e" metaid="f6eae696-19ab-4dd8-af09-37528a564931" name="Reduced_glutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H16N3O6S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N3O6S" hasOnlySubstanceUnits="true" id="M_gthrd_p" metaid="a9635167-b7c7-4115-a2fa-95aa4914a33b" name="Reduced_glutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H16N3O6S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C63H116N2O29P2" hasOnlySubstanceUnits="true" id="M_hlipidA_XF_c" metaid="cde26a11-d4db-4032-a434-28c5ec93113f" name="M_hlipidA_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C63H116N2O29P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H50N7O17P3S" hasOnlySubstanceUnits="true" id="M_dcacoa_c" metaid="_793f8d72-7a4d-47d7-98e2-bcbb112cd0b2" name="Decanoyl_CoA__n_C10_0CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H50N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_gal_c" metaid="_9ba9d16d-988a-4711-970f-57a94cce6ea5" name="D_Galactose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_gal_e" metaid="_52e47f01-5ef5-4afe-bfda-be27bfeca562" name="D_Galactose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="K" hasOnlySubstanceUnits="true" id="M_k_c" metaid="_232f0d8c-8b0a-4749-a7ca-5d12734bd206" name="potassium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: K</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5O3" hasOnlySubstanceUnits="true" id="M_2obut_c" metaid="ee189109-cd3b-4543-81a6-b72eefb96c9d" name="2_Oxobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO8P" hasOnlySubstanceUnits="true" id="M_g3ps_c" metaid="_40067cd7-167d-4fba-a233-0883aa18794d" name="Glycerophosphoserine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5N3O" hasOnlySubstanceUnits="true" id="M_csn_c" metaid="_0a157836-f6dd-476a-b4fb-6fe5231d5451" name="Cytosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H5N3O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="K" hasOnlySubstanceUnits="true" id="M_k_e" metaid="_806bd4c5-c3bb-413a-bf66-963a22bfb2f4" name="potassium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: K</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO8P" hasOnlySubstanceUnits="true" id="M_g3ps_e" metaid="_9df4095e-2177-43b9-b941-0114c6f850c6" name="Glycerophosphoserine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O7P2" hasOnlySubstanceUnits="true" id="M_ipdp_c" metaid="_57069a2f-f263-4d87-b32a-03f2a90a3ce3" name="Isopentenyl_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H23N2O8PRS" hasOnlySubstanceUnits="true" id="M_acACP_c" metaid="_7a08b1a3-ec7b-4b70-acd9-8907b1ab9e9f" name="Acetyl_ACP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C13H23N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C111H167N21O58" hasOnlySubstanceUnits="true" id="M_murein4px4px4p_p" metaid="_7034283c-795d-4c7c-8dd9-c73ebfa3af89" name="three_disacharide_linked_murein_units__tetrapeptide_crosslinked_tetrapeptide__A2pm__D_ala____tetrapeptide_corsslinked_tetrapeptide__A2pm__D_ala____middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C111H167N21O58</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H54FeN4O6" hasOnlySubstanceUnits="true" id="M_hemeA_1_c" metaid="_8dafc607-8c60-4144-bb61-e69d7933af41" name="M_hemeA_1_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C49H54FeN4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3" hasOnlySubstanceUnits="true" id="M_glyald_c" metaid="_99315983-b783-4d15-a64c-bb7c50508372" name="D_Glyceraldehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H6O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O5" hasOnlySubstanceUnits="true" id="M_mal_D_e" metaid="_3f836984-888d-442d-a80d-124ea9653d5e" name="M_mal_D_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3" hasOnlySubstanceUnits="true" id="M_glyald_e" metaid="_52131b8a-027f-4a1b-b1dc-4307a0d9d7c4" name="M_glyald_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H6O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="HCO3" hasOnlySubstanceUnits="true" id="M_hco3_p" metaid="_73857529-3fa7-459d-b32c-74dc47eeba72" name="M_hco3_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HCO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O5" hasOnlySubstanceUnits="true" id="M_mal_D_p" metaid="b66491f9-b558-456f-84fe-f45205b1a417" name="M_mal_D_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N3O6SSe" hasOnlySubstanceUnits="true" id="M_gslnt_c" metaid="f5b6bdf7-9148-4ce7-bd50-24127c890289" name="M_gslnt_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H16N3O6SSe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5N5O" hasOnlySubstanceUnits="true" id="M_preq0_c" metaid="b309cee8-6e97-4114-96bd-93c5d0ba25cb" name="7_cyano_7_carbaguanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5N5O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O5" hasOnlySubstanceUnits="true" id="M_mal_D_c" metaid="_458861eb-3197-4592-90fe-ca6bd9aa0f88" name="M_mal_D_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O9P" hasOnlySubstanceUnits="true" id="M_6pgl_c" metaid="ee88dbde-4073-4637-b00b-0767b52d584b" name="6_phospho_D_glucono_1_5_lactone" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H3O6" hasOnlySubstanceUnits="true" id="M_acon_C_c" metaid="_983551f4-31f2-4080-ae0b-846e98ef4a74" name="cis_Aconitate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H3O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_R_L_c" metaid="ed0f82b6-0a1a-4986-a913-e2835731af7d" name="L_methionine_R_sulfoxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O2R" hasOnlySubstanceUnits="true" id="M_asntrna_c" metaid="ee82cb7d-b294-4e8f-bcbd-9d89b010173f" name="L_Asparaginyl_tRNA_Asn_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H8N2O2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_R_L_e" metaid="d6df6cfa-f5fd-4e6a-bb9f-54c0f495e3fd" name="M_metsox_R_L_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H18N4O6" hasOnlySubstanceUnits="true" id="M_dmlz_c" metaid="cb34b92e-e342-4791-b821-d9e212d8605d" name="6_7_Dimethyl_8__1_D_ribityl_lumazine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C13H18N4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Zn" hasOnlySubstanceUnits="true" id="M_zn2_e" metaid="_4a556ba2-0ee3-43e7-a4f8-7546de1ffafa" name="Zinc" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Zn</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H7O4" hasOnlySubstanceUnits="true" id="M_34hpp_c" metaid="c9300efc-7e75-456f-b6a3-aea4c65b139d" name="3__4_Hydroxyphenyl_pyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H7O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="RCu11" hasOnlySubstanceUnits="true" id="M_11cu2s_CopA_p" metaid="_997bc6c2-f19f-44e1-b525-322eb1f375bb" name="Protein_CopA_bounded_to_11_atoms_of_copper" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: RCu11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Zn" hasOnlySubstanceUnits="true" id="M_zn2_c" metaid="_1fb155a7-e27d-4f0f-8fb7-10e208dcab56" name="Zinc" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Zn</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H12NO6" hasOnlySubstanceUnits="true" id="M_suchms_c" metaid="_3f394db0-1c6a-4775-9589-e5b9a86fe816" name="M_suchms_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H12NO6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Zn" hasOnlySubstanceUnits="true" id="M_zn2_p" metaid="_3f542a6b-e6f5-429b-a313-c9d62a9fe0c9" name="Zinc" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Zn</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H7N2O5P" hasOnlySubstanceUnits="true" id="M_imacp_c" metaid="aabf93be-f89c-4836-a9ec-ea62f62bbbc9" name="3__Imidazol_4_yl__2_oxopropyl_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H7N2O5P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" hasOnlySubstanceUnits="true" id="M_na1_e" metaid="_83d73a25-8317-4dca-910b-370f23535b9c" name="Sodium" sboTerm="SBO:0000240"/> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7N4O4" hasOnlySubstanceUnits="true" id="M_alltt_c" metaid="eee9822b-fa76-413e-9f94-233797c284c6" name="Allantoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H7N4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" hasOnlySubstanceUnits="true" id="M_na1_c" metaid="_4c0b1829-431b-453e-a0be-2f3caf81bfe3" name="Sodium" sboTerm="SBO:0000240"/> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13O8" hasOnlySubstanceUnits="true" id="M_kdo_c" metaid="_83255d96-44c0-4eac-9047-d321d1883508" name="3_Deoxy_D_manno_2_octulosonate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H13O8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO4" hasOnlySubstanceUnits="true" id="M_4hthr_c" metaid="_2f970658-3405-49d2-827e-cda31ac3c580" name="M_4hthr_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H37O7P" hasOnlySubstanceUnits="true" id="M_1hdecg3p_c" metaid="e94be5d7-f496-4f2a-8593-3bcfc9c2d1ce" name="1_hexadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H37O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" hasOnlySubstanceUnits="true" id="M_na1_p" metaid="_67530b6e-a8f1-458c-b939-90f3fc424138" name="Sodium" sboTerm="SBO:0000240"/> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H41N2O8PRS" hasOnlySubstanceUnits="true" id="M_cddec5eACP_c" metaid="_7d9bf15a-c064-4218-a701-d71b4206b45f" name="cis_dodec_5_enoyl__acyl_carrier_protein___n_C12_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H41N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15NO8P" hasOnlySubstanceUnits="true" id="M_4ppan_c" metaid="_32fb951f-9d39-48a0-bf99-b42cd73fcf37" name="D_4__Phosphopantothenate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H15NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H18N2O16P2" hasOnlySubstanceUnits="true" id="M_udp4kp_c" metaid="_267c7469-631b-4806-b114-f73873b2ca8f" name="UDP_4_keto_pentose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H18N2O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12NO8" hasOnlySubstanceUnits="true" id="M_sl2a6o_c" metaid="c53714e9-99bf-443b-a309-9745c89bcdac" name="N_Succinyl_2_L_amino_6_oxoheptanedioate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12NO8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O7P" hasOnlySubstanceUnits="true" id="M_dgmp_c" metaid="_88eff2be-703f-4c42-9026-2053283954d6" name="dGMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_R_L_p" metaid="_1a7ecca6-839c-43db-a508-6bb4abbdeec9" name="M_metsox_R_L_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H76O5" hasOnlySubstanceUnits="true" id="M_12dgr180_c" metaid="_912e1495-951c-4316-88ef-1f633ce29a60" name="1_2_Diacyl_sn_glycerol__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H76O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H16N4O6" hasOnlySubstanceUnits="true" id="M_4r5au_c" metaid="f669c91e-8061-44ca-aa0c-0aa962f5d915" name="4__1_D_Ribitylamino__5_aminouracil" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H16N4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NOR" hasOnlySubstanceUnits="true" id="M_iletrna_c" metaid="_6b19678e-6701-474f-9abc-29755a992a42" name="L_Isoleucyl_tRNA_Ile_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NOR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H35N7O19P3S" hasOnlySubstanceUnits="true" id="M_succoa_c" metaid="_09209ea9-8108-4d26-8459-40fe64cf3fb6" name="Succinyl_CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H35N7O19P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H76O5" hasOnlySubstanceUnits="true" id="M_12dgr180_p" metaid="_00a128f5-2674-4f2d-8a4c-aeb6c8a5bc36" name="M_12dgr180_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H76O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_inost_e" metaid="_75ad0a0a-5032-4e7e-bb14-0333fceb16a6" name="myo_Inositol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N10O22P5" hasOnlySubstanceUnits="true" id="M_ap5a_c" metaid="_84f0382a-a19e-4f6c-9e95-ad5376ac7502" name="P1_P5_Bis_5__adenosyl__pentaphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H24N10O22P5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_inost_c" metaid="de6efc63-7434-4c4c-ae58-746a80de0478" name="myo_Inositol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hddecACP_c" metaid="_80a29bd8-d2b9-471b-bb2b-956596ab1831" name="R__3_Hydroxydodecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H43N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N7O6" hasOnlySubstanceUnits="true" id="M_5mthf_c" metaid="d2df0672-3e3e-4352-aada-dde3e5ab2c86" name="5_Methyltetrahydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H24N7O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3" hasOnlySubstanceUnits="true" id="M_glyald_p" metaid="_61ea2ba8-0f32-4126-96e8-4b79cae44de2" name="M_glyald_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H6O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HCO3" hasOnlySubstanceUnits="true" id="M_hco3_c" metaid="f323515f-6b4d-4f7b-9856-3eefd33b670e" name="Bicarbonate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HCO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O8P" hasOnlySubstanceUnits="true" id="M_gar_c" metaid="fd54baee-ee54-4189-b660-6d95f5456c1b" name="N1__5_Phospho_D_ribosyl_glycinamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H14N2O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="HCO3" hasOnlySubstanceUnits="true" id="M_hco3_e" metaid="_61d939b1-ed1f-43ce-9e03-a4c08e8bc887" name="M_hco3_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HCO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H27N2O9PRS" hasOnlySubstanceUnits="true" id="M_3haACP_c" metaid="_033de923-3d72-446f-8bf6-1ceeaf457028" name="3R__3_Hydroxyacyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H27N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3" hasOnlySubstanceUnits="true" id="M_dha_c" metaid="a0bfad08-cbfb-4f6d-806f-0f4ff1765afa" name="M_dha_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H6O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12O6" hasOnlySubstanceUnits="true" id="M_quin_e" metaid="bd99a476-4b2e-4522-a3e4-6f25d1489e01" name="M_quin_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4" hasOnlySubstanceUnits="true" id="M_adn_p" metaid="_7d39ad76-0d65-4592-89a3-0c21f052f029" name="Adenosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N5O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4N2O" hasOnlySubstanceUnits="true" id="M_urea_c" metaid="_77223863-1562-4b4d-8f6e-dd771c950861" name="Urea" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH4N2O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H21N2O2" hasOnlySubstanceUnits="true" id="M_dann_c" metaid="_2352f11e-ba6f-4ddd-a073-d343b40a6112" name="7_8_Diaminononanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H21N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3" hasOnlySubstanceUnits="true" id="M_ser_D_c" metaid="aeb53456-a522-4845-a201-588cd0c2e42a" name="D_Serine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H75N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdhdec9eg_c" metaid="_43d30dbe-5f11-4ef3-953f-e8f9ea4f67b2" name="CDP_1_2_dihexadec_9_enoylglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C44H75N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12O6" hasOnlySubstanceUnits="true" id="M_quin_p" metaid="_8fc5fa9f-9288-4b97-99a7-dff2a6505342" name="M_quin_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H16N2O7" hasOnlySubstanceUnits="true" id="M_sl26da_c" metaid="_41ef3c64-c064-4cd4-92ed-418079560801" name="N_Succinyl_LL_2_6_diaminoheptanedioate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H16N2O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O3S" hasOnlySubstanceUnits="true" id="M_dhmtp_c" metaid="ac881e6e-fec6-4756-b044-e561c508a25e" name="M_dhmtp_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H10O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H68O5" hasOnlySubstanceUnits="true" id="M_12dgr160_c" metaid="_0afbc90f-9b1c-452c-8ad7-a4429280ce87" name="1_2_Diacyl_sn_glycerol__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H68O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_S_L_c" metaid="_16643f8f-c679-4729-9aa3-9f1f5f62564f" name="L_Methionine_Sulfoxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O4" hasOnlySubstanceUnits="true" id="M_23dhmp_c" metaid="c4a26a7f-7396-4c9b-b382-953bea50f73f" name="R__2_3_Dihydroxy_3_methylpentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_S_L_e" metaid="_49986ea5-6b53-4473-b693-50ce26c6e9e8" name="M_metsox_S_L_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4N2O" hasOnlySubstanceUnits="true" id="M_urea_p" metaid="_43c3bda0-062b-47b6-a12b-f30f608bbe0d" name="Urea" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH4N2O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H55O8P1" hasOnlySubstanceUnits="true" id="M_pa141_c" metaid="c188f9da-a9ab-4218-9ddf-0a1bf83e6f7c" name="1_2_ditetradec_7_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H55O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO3R" hasOnlySubstanceUnits="true" id="M_asptrna_c" metaid="_1bc00e1f-f2fd-4a62-9bba-e097ba867cb0" name="L_Aspartyl_tRNA_Asp_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H6NO3R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H7O3" hasOnlySubstanceUnits="true" id="M_3mob_c" metaid="_026bee60-b896-4ae9-ac99-18069021688d" name="3_Methyl_2_oxobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H7O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N5O7P" hasOnlySubstanceUnits="true" id="M_dhpmp_c" metaid="f228857b-3f2f-4b3f-83ca-0044dd00329f" name="M_dhpmp_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N5O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H25N5O16P2" hasOnlySubstanceUnits="true" id="M_adphep_LD_c" metaid="_043aff48-157c-40a7-820d-8b79c5d4c269" name="ADP_L_glycero_D_manno_heptose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H25N5O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H27O2" hasOnlySubstanceUnits="true" id="M_ttdca_c" metaid="_8193484f-1f9f-4cde-8c77-a264ef32b72c" name="tetradecanoate__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H27O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_xylu_L_c" metaid="_9ea7f04a-68b4-4f04-b027-8a9a1d987e35" name="M_xylu_L_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H27O2" hasOnlySubstanceUnits="true" id="M_ttdca_e" metaid="_85bf543c-dbf3-40b8-aec0-f8867d1a9759" name="tetradecanoate__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H27O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H55O8P1" hasOnlySubstanceUnits="true" id="M_pa141_p" metaid="f110f5d8-f27b-4fb9-86de-ac4db73ccf6d" name="1_2_ditetradec_7_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H55O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H62N7O17P3S" hasOnlySubstanceUnits="true" id="M_pmtcoa_c" metaid="a2492e1d-7658-447e-bc3f-6f124b6498ca" name="Palmitoyl_CoA__n_C16_0CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H62N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39N2O8PRS" hasOnlySubstanceUnits="true" id="M_dcaACP_c" metaid="_39d6026b-bd6c-43e1-819e-3e37a4d38279" name="Decanoyl_ACP__n_C10_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H39N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4" hasOnlySubstanceUnits="true" id="M_adn_e" metaid="_06681255-ca55-4d6e-a318-5146048fe430" name="Adenosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N5O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hcmrs7eACP_c" metaid="_991b9738-33dd-4908-9225-f410485a340b" name="R__3_hydroxy_cis_myristol_7_eoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H45N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O4" hasOnlySubstanceUnits="true" id="M_2dhp_c" metaid="_35e85121-8948-4271-b5da-3a8ee3131c50" name="2_Dehydropantoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4" hasOnlySubstanceUnits="true" id="M_adn_c" metaid="_7ee4933b-44b9-4ef3-b32f-6eb2879a4af8" name="Adenosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N5O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12O6" hasOnlySubstanceUnits="true" id="M_quin_c" metaid="_0f6f353d-ba4b-494d-90c0-1ed3ad6ee4e1" name="M_quin_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H6O" hasOnlySubstanceUnits="true" id="M_etoh_c" metaid="e47016c7-19a2-4935-ab82-c5eb220b89d0" name="Ethanol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H6O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2" hasOnlySubstanceUnits="true" id="M_val_L_p" metaid="d9887695-6657-4c5f-bb99-08f7125c9e82" name="L_Valine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H70O" hasOnlySubstanceUnits="true" id="M_2oph_c" metaid="d49cb102-3bd8-47e0-bf24-9cfa84e5179e" name="2_Octaprenylphenol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C46H70O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2" hasOnlySubstanceUnits="true" id="M_val_L_c" metaid="e438fed2-aa4e-4393-abde-490c77c49a61" name="L_Valine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O" hasOnlySubstanceUnits="true" id="M_4ahmmp_c" metaid="ce138066-f4d6-4c15-9b02-8caddd0dff9e" name="4_Amino_5_hydroxymethyl_2_methylpyrimidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9N3O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2" hasOnlySubstanceUnits="true" id="M_val_L_e" metaid="_46ca55d5-b6be-4c78-9219-c02c32c4dc16" name="L_Valine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5" hasOnlySubstanceUnits="true" id="M_fuc_L_e" metaid="e73d084e-64bf-40b1-b7b4-945299e2f7c9" name="M_fuc_L_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H26N7O14P2" hasOnlySubstanceUnits="true" id="M_nad_c" metaid="bb1b199e-2969-485a-a88c-1ec5f0179d20" name="Nicotinamide_adenine_dinucleotide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H26N7O14P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5" hasOnlySubstanceUnits="true" id="M_fuc_L_c" metaid="_355a215d-4db8-4832-8fb8-ca1ab01f0eda" name="M_fuc_L_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="AsO3" hasOnlySubstanceUnits="true" id="M_aso3_c" metaid="_5453d5d0-a66b-49bb-b42a-eabca45bc40c" name="Arsenite" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: AsO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O9P" hasOnlySubstanceUnits="true" id="M_2ddg6p_c" metaid="_114fd6c5-31ba-4155-b85e-21f7a01dd1c9" name="M_2ddg6p_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H8O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C77H119N15O41" hasOnlySubstanceUnits="true" id="M_murein5p4p_p" metaid="_9dc1160f-ee56-4e10-a93c-c065af2fb172" name="two_linked_disacharide_pentapeptide_and_tetrapeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C77H119N15O41</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H27O2" hasOnlySubstanceUnits="true" id="M_ttdca_p" metaid="f632defc-455c-460e-8b73-ffab54254999" name="tetradecanoate__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H27O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O7" hasOnlySubstanceUnits="true" id="M_5dglcn_c" metaid="d17cd973-347c-4f92-808f-f3db2829a900" name="5_Dehydro_D_gluconate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C81H156O17P2" hasOnlySubstanceUnits="true" id="M_clpn180_p" metaid="_070e315e-74cc-433c-867e-b5840ddb5f12" name="cardiolipin__tetraoctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C81H156O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10O5" hasOnlySubstanceUnits="true" id="M_3c2hmp_c" metaid="_177a430c-8868-472c-893e-1beb2488d67f" name="3_Carboxy_2_hydroxy_4_methylpentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H22N3O15P2" hasOnlySubstanceUnits="true" id="M_udpLa4n_c" metaid="ce336872-4e86-448f-8eff-547a30ec3470" name="M_udpLa4n_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H22N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_S_L_p" metaid="fa47220e-2432-42c1-9b38-149e2ebb40e0" name="M_metsox_S_L_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H68O5" hasOnlySubstanceUnits="true" id="M_12dgr160_p" metaid="e162bccf-b25d-40c0-b12e-e97ff2edd2ff" name="M_12dgr160_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H68O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H53NO12P" hasOnlySubstanceUnits="true" id="M_lipidX_XF_c" metaid="b1c41bb2-0646-4bcc-9e04-a1133485d7d4" name="M_lipidX_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C28H53NO12P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H36N2O11" hasOnlySubstanceUnits="true" id="M_novbcn_e" metaid="_47801743-fdfb-408d-a8a7-9787d1283699" name="novobiocin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H36N2O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N3O9P" hasOnlySubstanceUnits="true" id="M_5caiz_c" metaid="_6c9e98ef-7d1e-44ce-b4a9-42c3263c2ab8" name="5_phosphoribosyl_5_carboxyaminoimidazole" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N3O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H6O" hasOnlySubstanceUnits="true" id="M_etoh_p" metaid="_83b31a68-c565-4434-910e-c0c6359fff49" name="M_etoh_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H6O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49N2O8PRS" hasOnlySubstanceUnits="true" id="M_tpalm2eACP_c" metaid="_22e5a1e3-e9c3-4ff0-90da-9ab71904dc41" name="trans_Hexadec_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H49N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N2O4" hasOnlySubstanceUnits="true" id="M_forglu_c" metaid="e0b032b0-6ff3-46ef-b5ab-71288f24bc8d" name="N_Formimidoyl_L_glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H8N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12N2O3" hasOnlySubstanceUnits="true" id="M_progly_c" metaid="_691ebdf0-21c6-4598-a1ad-36baaae52159" name="M_progly_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H12N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H22N3O18P2" hasOnlySubstanceUnits="true" id="M_uacmamu_c" metaid="a6428724-467c-4601-8651-14050b290d18" name="UDP_N_acetyl_D_mannosaminouronate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H22N3O18P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO7P" hasOnlySubstanceUnits="true" id="M_pram_c" metaid="_85c62393-413d-4893-8c01-3c328c75978f" name="5_Phospho_beta_D_ribosylamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H43N3O19P2" hasOnlySubstanceUnits="true" id="M_u3aga_XF_c" metaid="bdcddf87-891e-48b4-ada6-61140f93ac48" name="M_u3aga_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H43N3O19P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H36N2O11" hasOnlySubstanceUnits="true" id="M_novbcn_p" metaid="_352b1076-1234-4942-9297-1cd9f37bc16d" name="novobiocin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H36N2O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14N4O4S2R4" hasOnlySubstanceUnits="true" id="M_trdrd_c" metaid="c0f2e38a-aeaf-4c60-9faa-7d994d090104" name="Reduced_thioredoxin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H14N4O4S2R4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3OR" hasOnlySubstanceUnits="true" id="M_histrna_c" metaid="_46576463-2ab2-47d6-bc19-ece0396b696e" name="L_Histidyl_tRNA_His_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9N3OR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H24N2O15P2" hasOnlySubstanceUnits="true" id="M_dtdprmn_c" metaid="_7248c5f2-5536-4fa6-8885-a1f09fd313f4" name="dTDP_L_rhamnose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H24N2O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2" hasOnlySubstanceUnits="true" id="M_pro_L_e" metaid="e5935128-9d10-4545-bc60-df7762d32050" name="L_Proline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2" hasOnlySubstanceUnits="true" id="M_pro_L_c" metaid="_60cffd2a-0723-46c3-b847-76149ed8ba06" name="L_Proline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O6" hasOnlySubstanceUnits="true" id="M_2ddglcn_c" metaid="_0c68e62b-a2ad-4ab3-a62d-59eea5cf7389" name="2_Dehydro_3_deoxy_D_gluconate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H71N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdtdecg_c" metaid="d172f13d-c895-4c2c-b6e8-bbe229008d13" name="CDP_1_2_ditetradecanoylglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C40H71N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N5O17P4" hasOnlySubstanceUnits="true" id="M_ppgpp_c" metaid="fbbed2b2-bc7f-463e-8a61-dedfb2f17969" name="Guanosine_3__5__bis_diphosphate_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N5O17P4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O5" hasOnlySubstanceUnits="true" id="M_cytd_c" metaid="d7071268-659c-44cc-9d26-6f94bc593872" name="Cytidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H13N3O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_ara5p_c" metaid="e94b938e-eac2-49a5-b775-b6b2ada4953a" name="D_Arabinose_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O10P2" hasOnlySubstanceUnits="true" id="M_dgdp_c" metaid="f40b6e12-896e-42da-ad86-290ed78876b0" name="dGDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O10P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="R" hasOnlySubstanceUnits="true" id="M_etfox_c" metaid="_1d6c03df-9b36-4f17-99aa-1b3c105d8f19" name="Electron_transfer_flavoprotein_oxidized" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H35N2O8PRS" hasOnlySubstanceUnits="true" id="M_ocACP_c" metaid="a12506fc-a8d8-4489-83e9-6eca6690bad8" name="Octanoyl_ACP__n_C8_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H35N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2" hasOnlySubstanceUnits="true" id="M_pro_L_p" metaid="_3aa4181e-df32-468a-996f-8ee889f22e76" name="L_Proline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H14N5O11P" hasOnlySubstanceUnits="true" id="M_dcamp_c" metaid="_3e36d473-0360-46f6-bea3-6e69921f5b5d" name="N6__1_2_Dicarboxyethyl__AMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H14N5O11P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O6" hasOnlySubstanceUnits="true" id="M_chor_c" metaid="_861501cd-bfaf-4379-af20-55f06b55f048" name="chorismate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H8O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H17NO11P" hasOnlySubstanceUnits="true" id="M_acmum6p_c" metaid="a7f2ca1c-7335-40a7-a4c9-40213dffd6c9" name="N_acetylmuramate_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H17NO11P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5O3" hasOnlySubstanceUnits="true" id="M_sucsal_c" metaid="_5bb109ef-224e-4128-9d2a-82069c112e24" name="Succinic_semialdehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N2O3" hasOnlySubstanceUnits="true" id="M_alaala_p" metaid="_2b110650-1ab5-4691-97e0-2452fdb6ee7f" name="D_Alanyl_D_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O4" hasOnlySubstanceUnits="true" id="M_dhmpt_c" metaid="_9d286888-17b3-45e3-8d35-29df68cb72e1" name="M_dhmpt_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H13N5O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="P2HO7" hasOnlySubstanceUnits="true" id="M_ppi_c" metaid="_86a426b1-c2d9-4c3c-93bc-3c02dc0df33f" name="Diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: P2HO7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O3" hasOnlySubstanceUnits="true" id="M_asn_L_c" metaid="b6b0aa02-7dd9-4612-be46-f310627219fa" name="L_Asparagine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H8N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10O10P" hasOnlySubstanceUnits="true" id="M_2dda7p_c" metaid="_3886d780-2882-46ea-a946-49d3ccb7923c" name="2_Dehydro_3_deoxy_D_arabino_heptonate_7_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H10O10P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H16N4" hasOnlySubstanceUnits="true" id="M_agm_p" metaid="_441bd501-469e-41d8-b5ad-a13ace02d988" name="M_agm_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H16N4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Co" hasOnlySubstanceUnits="true" id="M_cobalt2_c" metaid="_21744346-1c03-4851-8278-ffdcbdc40d47" name="Cobalt_Co2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Co</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H33O7P" hasOnlySubstanceUnits="true" id="M_1tdecg3p_c" metaid="_3b77a3b0-f42e-4935-b884-401ffdffec0a" name="1_tetradecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H33O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Co" hasOnlySubstanceUnits="true" id="M_cobalt2_e" metaid="f70b5bb1-2240-48c1-a529-dd502abf1328" name="Cobalt_Co2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Co</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N2O3" hasOnlySubstanceUnits="true" id="M_alaala_c" metaid="_9f439b98-142d-4805-8d78-4ff57bfc2251" name="D_Alanyl_D_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Co" hasOnlySubstanceUnits="true" id="M_cobalt2_p" metaid="_374b1ce7-42eb-4fc3-a848-cd0b91f8727f" name="Cobalt_Co2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Co</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hpalmACP_c" metaid="_591f9614-19ff-4312-b06f-e9a075408c77" name="R_3_hydroxypalmitoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H51N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H40N4O8" hasOnlySubstanceUnits="true" id="M_cpppg3_c" metaid="a0e3b7c5-adee-4995-8dcd-0f8e09571690" name="Coproporphyrinogen_III" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C36H40N4O8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N4O9P" hasOnlySubstanceUnits="true" id="M_5apru_c" metaid="_88bc271c-57ea-4ef6-b7fa-972715ec43f4" name="5_Amino_6__5__phosphoribosylamino_uracil" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H13N4O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H27N2O8PRS" hasOnlySubstanceUnits="true" id="M_butACP_c" metaid="_17ce6730-5fbe-4b03-91a1-82b6ca8b65d1" name="Butyryl_ACP__n_C4_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H27N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7O2" hasOnlySubstanceUnits="true" id="M_pac_c" metaid="d0773256-1447-4dbc-aaf0-41ad8a833922" name="Phenylacetic_acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H7O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O6" hasOnlySubstanceUnits="true" id="M_pphn_c" metaid="eac503bd-6aef-46b3-9533-9b26f1f8c190" name="Prephenate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H8O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaile_c" metaid="e4d6442b-ae1e-436b-8f82-0baeedc19d5d" name="tRNA_Ile_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H87N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdodecg_c" metaid="_81e152a5-a783-4702-8f88-e73bf5766026" name="CDP_1_2_dioctadecanoylglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C48H87N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5NO3" hasOnlySubstanceUnits="true" id="M_2amsa_c" metaid="_207bcba1-43b4-459f-a665-42b837a9ff00" name="2_Aminomalonate_semialdehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2" hasOnlySubstanceUnits="true" id="M_h2o2_p" metaid="_42b77eb6-d10c-45a7-ac8c-1518b2ee7787" name="Hydrogen_peroxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S" hasOnlySubstanceUnits="true" id="M_met_L_e" metaid="_26554b8f-fc5f-42e3-a5a2-22d5acae17b6" name="L_Methionine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S" hasOnlySubstanceUnits="true" id="M_met_L_c" metaid="a5c2ad58-768a-4217-812c-eb0b377dc6d2" name="L_Methionine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H17NO3" hasOnlySubstanceUnits="true" id="M_8aonn_c" metaid="_5e5dd73e-e9b3-4ad5-97e3-36dbba07eac7" name="8_Amino_7_oxononanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H17NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H60N7O17P3S" hasOnlySubstanceUnits="true" id="M_hdcoa_c" metaid="ab7c9567-6b41-46ec-8ca0-9208c5931875" name="Hexadecenoyl_CoA__n_C16_1CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H60N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2" hasOnlySubstanceUnits="true" id="M_h2o2_e" metaid="_5cddf336-5581-454d-a420-15eb05f6f669" name="Hydrogen_peroxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9N5O2" hasOnlySubstanceUnits="true" id="M_6hmhpt_c" metaid="_099a49ea-bc36-4aa8-8ea5-7a5fc7abdd76" name="6_hydroxymethyl_dihydropterin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H9N5O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2" hasOnlySubstanceUnits="true" id="M_h2o2_c" metaid="d3edff3f-0965-4524-988e-e012dd269a53" name="Hydrogen_peroxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H16N4" hasOnlySubstanceUnits="true" id="M_agm_c" metaid="e5d12b90-0e92-4296-99a1-4fa488158079" name="Agmatine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H16N4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H19N7O6" hasOnlySubstanceUnits="true" id="M_dhf_c" metaid="_0cdde813-73c0-4312-a5ac-3270f214d9dd" name="7_8_Dihydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H19N7O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H61N1O10P1" hasOnlySubstanceUnits="true" id="M_ps141_c" metaid="d979247f-71a8-407d-bc8e-9683a02c94fb" name="phosphatidylserine__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H61N1O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N2O4" hasOnlySubstanceUnits="true" id="M_ppbng_c" metaid="_59903941-7a27-49b5-a881-95339159efd4" name="Porphobilinogen" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Cu" hasOnlySubstanceUnits="true" id="M_cu_p" metaid="e8bcc9b6-666f-4fc5-85b6-a38ecd155920" name="Copper_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cu</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28N3O19P2" hasOnlySubstanceUnits="true" id="M_uamr_c" metaid="_7aedc4d6-d209-4d7a-9c88-bdf456a7a1a8" name="UDP_N_acetylmuramate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H28N3O19P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H21N5O15P2" hasOnlySubstanceUnits="true" id="M_prlp_c" metaid="b905b0c2-fac2-411a-a2bf-d1590df284b5" name="5___5_phospho_1_deoxyribulos_1_ylamino_methylideneamino__1__5_phosphoribosyl_imidazole_4_carboxamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H21N5O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H38N7O19P3S" hasOnlySubstanceUnits="true" id="M_14dhncoa_c" metaid="_68633470-e8bf-451e-8dfd-33ed36f1747c" name="M_14dhncoa_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C32H38N7O19P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_rib_D_p" metaid="_9b4632b8-c810-4aa9-bcef-4dd8c6dac22a" name="M_rib_D_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H1O10P3" hasOnlySubstanceUnits="true" id="M_pppi_c" metaid="_20ac260f-64a1-48ce-95b8-612167d825e9" name="Inorganic_triphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H1O10P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H74O4" hasOnlySubstanceUnits="true" id="M_q8_c" metaid="_713ced97-3ec8-4988-9d3e-4b6f02e22aeb" name="Ubiquinone_8" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C49H74O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_rib_D_c" metaid="b609e0d5-8769-49ee-af1c-6bd774cc1742" name="D_Ribose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_rib_D_e" metaid="_7fe4e843-8b2e-4a79-9c69-113790e3fbd3" name="M_rib_D_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H33N4O20P2" hasOnlySubstanceUnits="true" id="M_uama_c" metaid="e88b32e9-3ab7-4339-9dac-ee5d6103e7bd" name="UDP_N_acetylmuramoyl_L_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H33N4O20P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O5" hasOnlySubstanceUnits="true" id="M_dkdepiins_c" metaid="_57aa188e-b0ff-4aa5-bf0a-0f5ade5ba851" name="D_2_3_diketo_4_deoxy_epi_inositol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H8O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9NO5" hasOnlySubstanceUnits="true" id="M_acglu_c" metaid="_71143921-2770-4402-81e5-ab47f3ce3c7c" name="N_Acetyl_L_glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H9NO5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H112N14O39" hasOnlySubstanceUnits="true" id="M_murein5px3p_p" metaid="_9398569c-4242-4675-8c1e-cf6e06b7b4d5" name="two_disacharide_linked_murein_units__pentapeptide_corsslinked_tripeptide__A2pm__A2pm___middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C74H112N14O39</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35O2" hasOnlySubstanceUnits="true" id="M_ocdca_p" metaid="_4270b066-041a-4f59-8667-d54dd587d40e" name="octadecanoate__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H35O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H16N2" hasOnlySubstanceUnits="true" id="M_15dap_c" metaid="_39242362-797d-43b7-9196-266844627539" name="1_5_Diaminopentane" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H16N2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10NO5" hasOnlySubstanceUnits="true" id="M_4adcho_c" metaid="dfc3c1be-3f1c-46e7-baae-871822414165" name="4_amino_4_deoxychorismate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H10NO5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35O2" hasOnlySubstanceUnits="true" id="M_ocdca_c" metaid="_013a03d1-ca68-44fd-a28c-d3e27ab6b81b" name="octadecanoate__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H35O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O8P" hasOnlySubstanceUnits="true" id="M_dump_c" metaid="_90502e6c-c63e-4585-872c-71a131527779" name="dUMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N2O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35O2" hasOnlySubstanceUnits="true" id="M_ocdca_e" metaid="_01d7b1e3-4e48-4381-aa07-2bfafb8091e3" name="octadecanoate__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H35O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S" hasOnlySubstanceUnits="true" id="M_met_L_p" metaid="_31660c24-6d1e-44f1-901e-9d1e1a6fd1bd" name="L_Methionine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2" hasOnlySubstanceUnits="true" id="M_phe_L_c" metaid="efb6a520-6566-47f5-97e2-6b479ac974a7" name="L_Phenylalanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8N2" hasOnlySubstanceUnits="true" id="M_ind3acnl_c" metaid="_8f6328bd-b54a-481c-ae9a-d62bbec59141" name="Indole_3_acetonitrile" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H8N2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO8P" hasOnlySubstanceUnits="true" id="M_gam1p_c" metaid="d5721ea7-3c6b-4522-af59-b79d2ccc5ea0" name="D_Glucosamine_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H70O2" hasOnlySubstanceUnits="true" id="M_2ohph_c" metaid="_0fdfb462-13a9-4101-9ec0-697b8a86cb64" name="2_Octaprenyl_6_hydroxyphenol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C46H70O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H78N1O8P1" hasOnlySubstanceUnits="true" id="M_pe181_c" metaid="fd43a421-7afe-430a-b14b-75d2b355a298" name="phosphatidylethanolamine__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C41H78N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N2O4" hasOnlySubstanceUnits="true" id="M_dhor_S_c" metaid="_421dc086-7ce2-4b8d-9030-1a5c923a7b2b" name="S__Dihydroorotate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H5N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O9P" hasOnlySubstanceUnits="true" id="M_6pddgluc_c" metaid="_2793caa9-dd17-4761-aa7a-a6efa7a36fac" name="6_phospho_5_dehydro_2_deoxy_D_gluconate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H8O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H21N7O6" hasOnlySubstanceUnits="true" id="M_thf_c" metaid="c7211891-9bf2-4e60-b017-af0d573d8261" name="5_6_7_8_Tetrahydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H21N7O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H78N1O8P1" hasOnlySubstanceUnits="true" id="M_pe181_p" metaid="_2b926724-e5fb-40cb-8651-d6b9e7712f48" name="phosphatidylethanolamine__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C41H78N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11" hasOnlySubstanceUnits="true" id="M_tre_p" metaid="bbc8cd77-7423-4cba-9801-a0333bfb5efe" name="Trehalose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H22O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H29NO11" hasOnlySubstanceUnits="true" id="M_doxrbcn_p" metaid="c38ad4b2-1917-4507-ac64-0f8d0800ea51" name="doxorubicin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H29NO11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H17N2O7P" hasOnlySubstanceUnits="true" id="M_5prdmbz_c" metaid="_31322133-ee94-4555-bdbc-0ce4d1fcaebc" name="N1__5_Phospho_alpha_D_ribosyl__5_6_dimethylbenzimidazole" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H17N2O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H37N2O8PRS" hasOnlySubstanceUnits="true" id="M_cdec3eACP_c" metaid="_55282680-fafe-4f12-a120-486dd25a84e0" name="cis_dec_3_enoyl__acyl_carrier_protein___n_C10_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H37N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H53N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hcvac11eACP_c" metaid="_9137c6a2-dc9d-4d8f-a838-f0326b61f795" name="R__3_hydroxy_cis_vacc_11_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H53N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H48O5" hasOnlySubstanceUnits="true" id="M_fusa_p" metaid="ff503e73-c9f2-4b3c-8775-6bc323cb4be2" name="fusidic_acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H48O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H31O2" hasOnlySubstanceUnits="true" id="M_hdca_e" metaid="_145ff66e-ac94-4a8c-a834-024f1c35ee98" name="Hexadecanoate__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H31O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H23N3O14P2" hasOnlySubstanceUnits="true" id="M_4c2me_c" metaid="_294e9ce7-1a62-4f47-b794-aa14f1cd97c8" name="4__cytidine_5__diphospho__2_C_methyl_D_erythritol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H23N3O14P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H31O2" hasOnlySubstanceUnits="true" id="M_hdca_c" metaid="_10ffd07d-57bf-4f7b-ad24-9f3742897e53" name="Hexadecanoate__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H31O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9O5" hasOnlySubstanceUnits="true" id="M_skm_c" metaid="f1c19d7a-3ba5-48c5-be9b-4107b1b8dced" name="Shikimate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H9O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO4" hasOnlySubstanceUnits="true" id="M_acser_c" metaid="_7a0e7d9e-ac6c-47c6-b80e-7cffd61fe6c4" name="O_Acetyl_L_serine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H58O10P1" hasOnlySubstanceUnits="true" id="M_pg120_c" metaid="_69cc85e7-8d6e-49ce-8b76-0e4e45449467" name="Phosphatidylglycerol__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H58O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H26N3O19P2" hasOnlySubstanceUnits="true" id="M_uaccg_c" metaid="_37ec534f-d7ca-48a3-9fe9-c7f96048cb01" name="UDP_N_acetyl_3_O__1_carboxyvinyl__D_glucosamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H26N3O19P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H67O8P" hasOnlySubstanceUnits="true" id="M_pa160_p" metaid="fe0dbd2d-c340-4ad2-864f-963bfd9fe175" name="1_2_dihexadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H67O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H9O10P" hasOnlySubstanceUnits="true" id="M_3psme_c" metaid="d94b5739-b97f-4b86-8b80-835b55bdd053" name="5_O__1_Carboxyvinyl__3_phosphoshikimate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H9O10P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnacys_c" metaid="_90505ec1-a563-4122-bdd0-896e9288e5ad" name="tRNA_Cys_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H15N4O12P" hasOnlySubstanceUnits="true" id="M_25aics_c" metaid="c67d6700-c935-4ec0-9260-96c100b30df9" name="S__2__5_Amino_1__5_phospho_D_ribosyl_imidazole_4_carboxamido_succinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C13H15N4O12P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H29NO11" hasOnlySubstanceUnits="true" id="M_doxrbcn_e" metaid="_0762590e-2935-478c-8104-b4a1dc326bcf" name="doxorubicin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H29NO11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O4" hasOnlySubstanceUnits="true" id="M_dhnpt_c" metaid="d54cfcb8-dc3a-4021-8796-53a7230eb806" name="Dihydroneopterin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H13N5O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11" hasOnlySubstanceUnits="true" id="M_tre_e" metaid="b4805ee3-69b6-4e31-b5fb-2e3f0a9cb952" name="Trehalose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H22O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H31O2" hasOnlySubstanceUnits="true" id="M_hdca_p" metaid="cc21791b-825b-4982-8e9d-9dbe5e055551" name="Hexadecanoate__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H31O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H3NO4" hasOnlySubstanceUnits="true" id="M_iasp_c" metaid="_93117f5e-0e6d-4a26-991c-2fbf5b7298c8" name="Iminoaspartate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H3NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H25N7O17P3" hasOnlySubstanceUnits="true" id="M_nadp_c" metaid="_7a21d41c-2527-4fa5-a89d-c0f684871ac8" name="Nicotinamide_adenine_dinucleotide_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H25N7O17P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N4O8P" hasOnlySubstanceUnits="true" id="M_aicar_c" metaid="c365e5c7-e20c-491b-8600-054f09cfbd2e" name="5_Amino_1__5_Phospho_D_ribosyl_imidazole_4_carboxamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H13N4O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_ile_L_p" metaid="_25731139-3702-4a6d-966c-ae4d0b79a88d" name="L_Isoleucine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O5" hasOnlySubstanceUnits="true" id="M_ins_c" metaid="fca9d728-c3db-4aac-a171-4b2fd1cc7a08" name="Inosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O3Se" hasOnlySubstanceUnits="true" id="M_slnt_c" metaid="d8724f50-c723-4339-90c4-d760b6ff272a" name="M_slnt_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O3Se</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_ile_L_e" metaid="_10d6d005-33ed-4b6a-9940-3b391a2db297" name="L_Isoleucine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="O3Se" hasOnlySubstanceUnits="true" id="M_slnt_e" metaid="_66b164a6-1705-494f-905b-2b68072c7e6c" name="M_slnt_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O3Se</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H58O10P1" hasOnlySubstanceUnits="true" id="M_pg120_p" metaid="_8d2f2626-1dd2-4252-9ed9-0ebdb215520a" name="Phosphatidylglycerol__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H58O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_ru5p_D_c" metaid="_4e6d32d9-35cb-48cc-8b7c-551c09c7a4eb" name="D_Ribulose_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_ile_L_c" metaid="_29a7e4f6-5584-4bd6-b056-f1832a26f099" name="L_Isoleucine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H67O8P" hasOnlySubstanceUnits="true" id="M_pa160_c" metaid="_36623cd0-5efa-4a3e-a7e4-389e9e59611e" name="1_2_dihexadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H67O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25O7P2" hasOnlySubstanceUnits="true" id="M_frdp_c" metaid="_14d57c51-4548-451c-9235-2ad74a5f1456" name="Farnesyl_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H25O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnahis_c" metaid="e909d795-209b-4437-8c01-081dddf99e02" name="tRNA_His_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H6NO2" hasOnlySubstanceUnits="true" id="M_anth_c" metaid="e755e642-5aa5-4644-a8cd-b64fe895b125" name="Anthranilate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H6NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="XH2" hasOnlySubstanceUnits="true" id="M_dsbard_p" metaid="b5ea8e0e-dfdc-41a2-b871-13f5e34057c4" name="periplasmic_protein_disulfide_isomerase_I__reduced_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: XH2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H57O13P2" hasOnlySubstanceUnits="true" id="M_pgp120_c" metaid="_06e4d779-1980-4ed0-888a-4a87b304bd3c" name="Phosphatidylglycerophosphate__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H57O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnamet_c" metaid="_11ed32e7-7671-4cb2-a6d8-003f716f0c48" name="tRNA_Met_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="O3Se" hasOnlySubstanceUnits="true" id="M_slnt_p" metaid="_9a371751-3fa6-44d4-80cd-fd9398bd2621" name="M_slnt_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O3Se</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H51N7O26P2" hasOnlySubstanceUnits="true" id="M_ugmd_c" metaid="_6ce9d60d-b574-4192-be81-79aba1aa37bb" name="UDP_N_acetylmuramoyl_L_alanyl_D_gamma_glutamyl_meso_2_6_diaminopimelate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H51N7O26P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H57O13P2" hasOnlySubstanceUnits="true" id="M_pgp120_p" metaid="_9380ba53-3d75-46e5-a124-f315e5dc9226" name="Phosphatidylglycerophosphate__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H57O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C15668H28496N8O10693P8" hasOnlySubstanceUnits="true" id="M_OLPS_XF_p" metaid="_6b61be36-75b6-4cc1-b813-63b83b808e30" name="M_OLPS_XF_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15668H28496N8O10693P8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H7O7" hasOnlySubstanceUnits="true" id="M_micit_c" metaid="_89b182bb-9101-4f1a-9c52-62f1a4245ea4" name="methylisocitrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H7O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C15668H28496N8O10693P8" hasOnlySubstanceUnits="true" id="M_OLPS_XF_e" metaid="_6534f674-cebc-4996-91cd-7c83559f5d44" name="M_OLPS_XF_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15668H28496N8O10693P8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P2" hasOnlySubstanceUnits="true" id="M_h2mb4p_c" metaid="e88af32f-52bf-4ea3-96d4-c9ed6f6b9627" name="1_hydroxy_2_methyl_2__E__butenyl_4_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O11P2" hasOnlySubstanceUnits="true" id="M_dudp_c" metaid="_7f99c338-b79b-4a9e-9a3d-55ab23354df3" name="dUDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N2O11P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O15P3" hasOnlySubstanceUnits="true" id="M_utp_c" metaid="_78f0205b-6045-4d99-afb0-1036908abb19" name="UTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N2O15P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15668H28496N8O10693P8" hasOnlySubstanceUnits="true" id="M_OLPS_XF_c" metaid="e5ec0980-9d6c-4725-a6d8-01596295f970" name="M_OLPS_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15668H28496N8O10693P8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H7NO6PS" hasOnlySubstanceUnits="true" id="M_2c4mthzep_c" metaid="_5e130cfb-277f-428a-a098-650ca7817479" name="M_2c4mthzep_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H7NO6PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O9P" hasOnlySubstanceUnits="true" id="M_xmp_c" metaid="_8099d8a8-dd25-47cf-915e-c00420a9d421" name="Xanthosine_5__phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N4O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O13P3" hasOnlySubstanceUnits="true" id="M_dctp_c" metaid="a08642fb-55ee-4236-8a19-b968415caa32" name="dCTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N3O13P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO3" hasOnlySubstanceUnits="true" id="M_tyr_L_c" metaid="_50dc732a-90b1-4d27-bc77-30a603eeef26" name="L_Tyrosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H48O5" hasOnlySubstanceUnits="true" id="M_fusa_e" metaid="a4f39bd6-6d7a-4f83-ab21-906515cb01fe" name="fusidic_acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H48O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O3" hasOnlySubstanceUnits="true" id="M_4mop_c" metaid="ec7b9db0-e55f-4b85-a54e-67ba036de2ea" name="4_Methyl_2_oxopentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O14P3" hasOnlySubstanceUnits="true" id="M_gtp_c" metaid="f501b58d-8a76-4c4b-b5b0-0cb6af68405d" name="GTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O14P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="SO3" hasOnlySubstanceUnits="true" id="M_so3_c" metaid="_4530d80a-8366-4757-8e42-1a12017a710b" name="Sulfite" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: SO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N2O8P" hasOnlySubstanceUnits="true" id="M_dtmp_c" metaid="_8fa8df5e-f9a6-4a2a-9535-563565b3373c" name="dTMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N2O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Ca" hasOnlySubstanceUnits="true" id="M_ca2_p" metaid="a8f8369a-3d8f-471a-980e-ce1a5aa73b7f" name="M_ca2_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Ca</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="SO3" hasOnlySubstanceUnits="true" id="M_so3_e" metaid="_770add00-6e39-4481-92b6-c6c36783a157" name="M_so3_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: SO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="SO3" hasOnlySubstanceUnits="true" id="M_so3_p" metaid="_226de117-767b-413e-b81c-90865ae649c2" name="M_so3_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: SO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Ca" hasOnlySubstanceUnits="true" id="M_ca2_e" metaid="a50766e1-e816-4b32-bd89-9ea5ed091798" name="M_ca2_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Ca</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H13O10P" hasOnlySubstanceUnits="true" id="M_s7p_c" metaid="fe317856-0f85-41e7-8c01-d8fce29b7d8a" name="Sedoheptulose_7_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H13O10P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N2O6P" hasOnlySubstanceUnits="true" id="M_eig3p_c" metaid="_570003c0-6fb9-48ed-908a-2f1b9254e4ad" name="D_erythro_1__Imidazol_4_yl_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9N2O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Ca" hasOnlySubstanceUnits="true" id="M_ca2_c" metaid="_57786765-d0e3-4a2a-ac05-231fa2bfec2d" name="M_ca2_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Ca</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO4" hasOnlySubstanceUnits="true" id="M_asp_L_p" metaid="eccbb63e-15b0-4489-8866-49653582bf25" name="L_Aspartate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H6NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnathr_c" metaid="caa87872-92e6-48eb-8128-373ec9bdbf40" name="tRNA_Thr_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O5" hasOnlySubstanceUnits="true" id="M_mal_L_c" metaid="_97fc5cd6-bf2d-42b1-b914-4cefd2653eaf" name="L_Malate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H69O3" hasOnlySubstanceUnits="true" id="M_3ophb_c" metaid="f749e6a4-51c6-4758-9ee2-e1082b623069" name="3_Octaprenyl_4_hydroxybenzoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C47H69O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H62N1O8P1" hasOnlySubstanceUnits="true" id="M_pe141_c" metaid="f3f86fa3-01b6-4446-b2b3-aeaddbba06eb" name="phosphatidylethanolamine__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C33H62N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H4O2S8Fe2R" hasOnlySubstanceUnits="true" id="M_sufbcd_2fe2s_c" metaid="a5250cc2-3161-4938-b306-d352fac7e26c" name="M_sufbcd_2fe2s_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H4O2S8Fe2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="XH2" hasOnlySubstanceUnits="true" id="M_grxrd_c" metaid="_8b3a6c1e-90fb-4fbd-b760-309122e8d542" name="glutaredoxin__reduced_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: XH2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10NO4" hasOnlySubstanceUnits="true" id="M_acg5sa_c" metaid="_9a6a69d9-7816-41ad-8ab3-31de0f63cebd" name="N_Acetyl_L_glutamate_5_semialdehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H10NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H52O5" hasOnlySubstanceUnits="true" id="M_12dgr120_c" metaid="_3307887d-664c-42df-99b3-c0d5d6546753" name="1_2_Diacyl_sn_glycerol__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H52O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17N2O3" hasOnlySubstanceUnits="true" id="M_dtbt_c" metaid="_0af8ca97-a291-4301-b6f0-9f7dadb736a3" name="Dethiobiotin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H17N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H62N1O8P1" hasOnlySubstanceUnits="true" id="M_pe141_p" metaid="_4f68c804-0133-4b13-93a2-83e5d3e98b36" name="phosphatidylethanolamine__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C33H62N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C65H116O17P2" hasOnlySubstanceUnits="true" id="M_clpn141_p" metaid="b55e712c-9b04-4968-b46a-97f0ed08440c" name="cardiolipin__tetratetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C65H116O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13OS2" hasOnlySubstanceUnits="true" id="M_lipopb_c" metaid="_9197acaa-244b-4a66-8eed-d7562ebe699a" name="lipoate__protein_bound_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H13OS2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O6P" hasOnlySubstanceUnits="true" id="M_db4p_c" metaid="be6cc88e-8869-4f0a-95ea-1cec56d68bf0" name="3_4_dihydroxy_2_butanone_4_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H7O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3" hasOnlySubstanceUnits="true" id="M_glu1sa_c" metaid="f8659985-6b20-4514-bdbd-5c4e7b903e27" name="L_Glutamate_1_semialdehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H114N14O40" hasOnlySubstanceUnits="true" id="M_murein4p4p_p" metaid="_6a913d64-d6ad-45f8-8a62-2825c672fe2e" name="two_linked_disacharide_tetrapeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C74H114N14O40</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="NH4" hasOnlySubstanceUnits="true" id="M_nh4_p" metaid="e3e1fbef-5cca-40a9-a98c-22d68418d224" name="Ammonium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NH4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_xyl_D_p" metaid="_41893ac6-e7a9-4d67-896f-7d614296c101" name="M_xyl_D_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_D_p" metaid="cc2947f7-02aa-4881-b504-703d4e90a8de" name="D_Alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_xyl_D_c" metaid="_55996ed3-aa03-4e98-9d22-d87f9c5ced2f" name="M_xyl_D_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H8O2S6R" hasOnlySubstanceUnits="true" id="M_sufbcd_c" metaid="c5d03c04-fb33-411e-a839-cb6400a75a7e" name="M_sufbcd_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H8O2S6R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_xyl_D_e" metaid="_190803c7-1935-49e4-b876-02d5c43612c7" name="M_xyl_D_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe2_c" metaid="_83518b44-6823-4dea-81ce-fabf6225aa85" name="Iron_2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Fe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe2_e" metaid="_490d747d-96d9-44b5-a74f-ea08c79312b2" name="Iron_2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Fe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H64N3O20P2" hasOnlySubstanceUnits="true" id="M_u23ga_XF_c" metaid="d830b30e-b667-4e90-b157-3346d21687d9" name="M_u23ga_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H64N3O20P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O2" hasOnlySubstanceUnits="true" id="M_o2s_c" metaid="_03c73ba3-08aa-40cd-b94f-267fccb11f22" name="Superoxide_anion" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="NH4" hasOnlySubstanceUnits="true" id="M_nh4_e" metaid="_238ce08f-7369-4406-88eb-adef1a32991c" name="Ammonium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NH4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H26N7O17P3" hasOnlySubstanceUnits="true" id="M_nadph_c" metaid="_79cb1c70-0605-41de-a3db-25cfc1fba402" name="Nicotinamide_adenine_dinucleotide_phosphate___reduced" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H26N7O17P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="NH4" hasOnlySubstanceUnits="true" id="M_nh4_c" metaid="f4b835be-56be-4913-9e89-389293095d56" name="Ammonium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NH4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe2_p" metaid="e656a6e5-41a0-4119-a49e-ef75e9115fbf" name="Iron_2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Fe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H22N3O17P3" hasOnlySubstanceUnits="true" id="M_2p4c2me_c" metaid="_84c625cc-fc64-4646-9307-d5026b6bba60" name="2_phospho_4__cytidine_5__diphospho__2_C_methyl_D_erythritol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H22N3O17P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_D_c" metaid="be26013f-3974-45f5-86c0-9aede6e77f48" name="D_Alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_r5p_c" metaid="c107c6cb-e28d-4921-9a7e-0eb61b9914be" name="alpha_D_Ribose_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H52N6O19" hasOnlySubstanceUnits="true" id="M_anhgm3p_p" metaid="e188fdee-dc75-4563-beb0-502ac6769ee4" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tripeptide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H52N6O19</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H73O13P2" hasOnlySubstanceUnits="true" id="M_pgp160_c" metaid="_2e531889-f3ed-462b-9edc-1ef72593aeac" name="Phosphatidylglycerophosphate__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H73O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O10P" hasOnlySubstanceUnits="true" id="M_6pgc_c" metaid="b25c40ad-223d-4863-b211-23866e13e178" name="6_Phospho_D_gluconate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H10O10P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N2O14P3" hasOnlySubstanceUnits="true" id="M_dttp_c" metaid="_97d315e1-8977-45fa-abb6-cd2266001fbb" name="dTTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N2O14P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H55N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hoctaACP_c" metaid="cd8a2f3e-3417-498f-aedf-ccd745a14f68" name="R__3_Hydroxyoctadecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H55N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25N2O9PRS" hasOnlySubstanceUnits="true" id="M_actACP_c" metaid="_6d21b80a-2c5d-460d-b282-74d450bbc9d5" name="Acetoacetyl_ACP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H25N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H52N6O19" hasOnlySubstanceUnits="true" id="M_anhgm3p_c" metaid="_4c36a102-91f7-4e9a-bfe5-7fb7765935e6" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tripeptide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H52N6O19</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H27N2O10PRS" hasOnlySubstanceUnits="true" id="M_egmeACP_c" metaid="ae0a7dd9-3026-414e-8379-a1c2e313a528" name="Enoylglutaryl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H27N2O10PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H31N2O10PRS" hasOnlySubstanceUnits="true" id="M_pimACP_c" metaid="_4a6b456d-2fb7-48bc-afc1-f4e457b15704" name="Pimeloyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H31N2O10PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H20N7O6" hasOnlySubstanceUnits="true" id="M_methf_c" metaid="c972eb08-db57-420d-9381-e52b69f26d30" name="5_10_Methenyltetrahydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H20N7O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="O2" hasOnlySubstanceUnits="true" id="M_o2_p" metaid="_08237c0b-8d28-4610-8edb-c238b34de557" name="Dioxygen" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H73O13P2" hasOnlySubstanceUnits="true" id="M_pgp160_p" metaid="_810197d9-640e-48b3-bf2f-8d401750eff4" name="Phosphatidylglycerophosphate__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H73O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8NO6P" hasOnlySubstanceUnits="true" id="M_phom_c" metaid="_15898cdc-8b5e-4ebd-9877-8cc61ccd4930" name="O_Phospho_L_homoserine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H8NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H83N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdodec11eg_c" metaid="_46d36596-2ce2-41b5-b835-54c7218187b4" name="CDP_1_2_dioctadec_11_enoylglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C48H83N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H7O4" hasOnlySubstanceUnits="true" id="M_alac_S_c" metaid="_687953f9-6829-4dd8-823c-84bc6e6c29b3" name="S__2_Acetolactate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H7O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H75O8P" hasOnlySubstanceUnits="true" id="M_pa180_p" metaid="_32343c1c-0a3c-4091-86df-62277eff228c" name="1_2_dioctadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H75O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H52O5" hasOnlySubstanceUnits="true" id="M_12dgr120_p" metaid="ae07c5f0-d23b-484e-97b4-195dda7d543d" name="M_12dgr120_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H52O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O2" hasOnlySubstanceUnits="true" id="M_trp_L_c" metaid="_86423dcb-31bd-4177-b7eb-f7b9c3c27372" name="L_Tryptophan" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H39N5O23P2" hasOnlySubstanceUnits="true" id="M_uamag_c" metaid="_8c17a128-5d55-4f9a-9be4-f4911ab7e4fb" name="UDP_N_acetylmuramoyl_L_alanyl_D_glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C28H39N5O23P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C71H107N13O38" hasOnlySubstanceUnits="true" id="M_murein3px4p_p" metaid="a00f4e63-0a18-4c52-810f-238542cdfbc1" name="two_disacharide_linked_murein_units__tripeptide_crosslinked_tetrapeptide__A2pm__D_ala___middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C71H107N13O38</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21N2O7PRS" hasOnlySubstanceUnits="true" id="M_ACP_c" metaid="_472116a4-d2cf-45ba-915d-86b5cc105f06" name="acyl_carrier_protein" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H21N2O7PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O7PS" hasOnlySubstanceUnits="true" id="M_5mdru1p_c" metaid="_71100846-7171-4b77-8870-62eca0fd573d" name="M_5mdru1p_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O7PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O2" hasOnlySubstanceUnits="true" id="M_mthgxl_c" metaid="b887965c-9452-42d7-a22e-baa0a5a843ff" name="Methylglyoxal" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H4O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H75O8P" hasOnlySubstanceUnits="true" id="M_pa180_c" metaid="_3732d255-4381-4bb1-8ebd-a90d1432fbe8" name="1_2_dioctadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H75O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H41N2O9PRS" hasOnlySubstanceUnits="true" id="M_3oddecACP_c" metaid="_6ffd781b-5e15-4bb0-adc8-b0b05ec36855" name="3_Oxododecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H41N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H65O13P2" hasOnlySubstanceUnits="true" id="M_pgp140_c" metaid="_5fb87366-9fc9-4a49-b0f1-5c18e13a6018" name="Phosphatidylglycerophosphate__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H65O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3" hasOnlySubstanceUnits="true" id="M_ser_L_c" metaid="b666fa77-cef2-4c37-8d40-a553b728e8ad" name="L_Serine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H18N2O4" hasOnlySubstanceUnits="true" id="M_rdmbzi_c" metaid="_9bf3dd91-d3c2-4be1-83b9-d15eb375d1d3" name="N1__alpha_D_ribosyl__5_6_dimethylbenzimidazole" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H18N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H36N4O16" hasOnlySubstanceUnits="true" id="M_uppg3_c" metaid="aefadabf-4806-463b-8dcf-424db614e01e" name="Uroporphyrinogen_III" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C40H36N4O16</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2Se" hasOnlySubstanceUnits="true" id="M_selhcys_c" metaid="add92886-d68c-400d-a608-87b7d2655da8" name="Selenohomocysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO2Se</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3" hasOnlySubstanceUnits="true" id="M_hom_L_c" metaid="bf36d9c9-5f97-41cb-bd84-506bf8977cd0" name="L_Homoserine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7N" hasOnlySubstanceUnits="true" id="M_indole_c" metaid="c9ff885b-532d-49e6-ac9d-4ab3afdef128" name="M_indole_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H7N</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H36N7O18P3S" hasOnlySubstanceUnits="true" id="M_aacoa_c" metaid="d7c74ffc-762e-4458-8aa4-990be3b32b43" name="Acetoacetyl_CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H36N7O18P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H31N2O11PRS" hasOnlySubstanceUnits="true" id="M_opmeACP_c" metaid="_0a001492-7fe0-47cd-babd-0c3415d27b2b" name="3_Oxo_pimeloyl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H31N2O11PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2" hasOnlySubstanceUnits="true" id="M_gly_p" metaid="b35981b6-aee2-4541-988d-3eeb4e9a7c26" name="Glycine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H5NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5O3" hasOnlySubstanceUnits="true" id="M_acac_c" metaid="f897ec0e-395a-4bf1-bba0-bcb8e72c3648" name="Acetoacetate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O7P" hasOnlySubstanceUnits="true" id="M_dcmp_c" metaid="_6c621c31-b987-4e9f-9880-794aeff18760" name="dCMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N3O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O14P3" hasOnlySubstanceUnits="true" id="M_itp_c" metaid="_774db795-83b1-4585-8485-3bfa0156e766" name="ITP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N4O14P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2" hasOnlySubstanceUnits="true" id="M_gly_e" metaid="_11049dd9-1838-42ae-90b6-d7081ea742e8" name="Glycine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H5NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69N1O10P1" hasOnlySubstanceUnits="true" id="M_ps161_c" metaid="ac18d7e5-0b39-4fb7-b1fc-bb08d4f1ae96" name="phosphatidylserine__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H69N1O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2R" hasOnlySubstanceUnits="true" id="M_thrtrna_c" metaid="_860a736f-5b1f-44be-8559-f3a648922a5f" name="L_Threonyl_tRNA_Thr_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O2S10Fe4R" hasOnlySubstanceUnits="true" id="M_sufbcd_2fe2s2_c" metaid="a22e912a-1f29-4df2-9e79-f57714fe2a00" name="M_sufbcd_2fe2s2_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O2S10Fe4R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H61N9O28P2" hasOnlySubstanceUnits="true" id="M_ugmda_c" metaid="c3bd4715-8445-4d3c-bbde-ea68d321c37b" name="UDP_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C41H61N9O28P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2" hasOnlySubstanceUnits="true" id="M_gly_c" metaid="_1eb1bf75-0a4f-4556-b9a1-367bbb5da0f9" name="Glycine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H5NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H65O13P2" hasOnlySubstanceUnits="true" id="M_pgp140_p" metaid="_36585e3d-b923-4499-9905-981b8a14a1b8" name="Phosphatidylglycerophosphate__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H65O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="XH2" hasOnlySubstanceUnits="true" id="M_dsbcrd_p" metaid="_17c951f0-f66b-4570-bc25-0fc79729db39" name="protein_disulfide_isomerase_II__reduced_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: XH2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_B_c" metaid="_5eef8089-a73c-420e-a253-fd35255ab7c4" name="beta_Alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_xylu_D_c" metaid="cac99b80-c7f6-4b10-8f29-6c9bcbe43731" name="D_Xylulose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O2R" hasOnlySubstanceUnits="true" id="M_glntrna_c" metaid="_1afac2e2-a970-45d3-9b2a-a99818ff5717" name="L_Glutaminyl_tRNA_Gln_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10N2O2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="O2" hasOnlySubstanceUnits="true" id="M_o2_e" metaid="_7a3c546d-aae9-400f-8a68-2584af93deab" name="Dioxygen" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O2" hasOnlySubstanceUnits="true" id="M_o2_c" metaid="_920db3b3-4cfd-4d03-a1bb-99fb95379c36" name="Dioxygen" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H21N7O6" hasOnlySubstanceUnits="true" id="M_mlthf_c" metaid="d7a2c78b-dbaf-49fb-97e6-b7bdf8707ee6" name="5_10_Methylenetetrahydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H21N7O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O2" hasOnlySubstanceUnits="true" id="M_gcald_c" metaid="_4045042c-4961-478c-9a3c-9af1e66a3996" name="Glycolaldehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H4O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3" hasOnlySubstanceUnits="true" id="M_ser_L_p" metaid="_1194e4f2-dd8f-4074-9966-92524ee9094c" name="L_Serine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H21N3O16P2" hasOnlySubstanceUnits="true" id="M_udpLa4fn_c" metaid="_36f966e5-da63-4c99-8a43-558ae54009cb" name="M_udpLa4fn_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H21N3O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H51N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ocvac11eACP_c" metaid="db6136a2-7b96-4201-be7d-8455a2ca2886" name="3_oxo_cis_vacc_11_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H51N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3" hasOnlySubstanceUnits="true" id="M_ser_L_e" metaid="d0f98745-1684-4a23-bb58-b12c850f41a2" name="L_Serine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H14N3O" hasOnlySubstanceUnits="true" id="M_Ncbmpts_c" metaid="c2189df2-d53f-42e3-a49f-4df323c52e6d" name="M_Ncbmpts_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H14N3O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H19O2" hasOnlySubstanceUnits="true" id="M_dca_c" metaid="_66ed4545-1d94-4af3-b8db-d431ff6d993a" name="Decanoate__n_C10_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H19O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O2" hasOnlySubstanceUnits="true" id="M_acetol_c" metaid="e01fadbd-2425-46dc-bf6a-0d89e3023690" name="Acetol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H6O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4" hasOnlySubstanceUnits="true" id="M_26dap_LL_c" metaid="_384c9764-e06f-4341-8700-cc42fb02c829" name="LL_2_6_Diaminoheptanedioate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H14N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H19O2" hasOnlySubstanceUnits="true" id="M_dca_p" metaid="e4ee61d6-be90-4fe4-a39a-b3fdf5f10d40" name="Decanoate__n_C10_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H19O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7N2" hasOnlySubstanceUnits="true" id="M_aprop_c" metaid="b4654be9-f0de-481b-99db-20c6c45e318b" name="alpha_Aminopropiononitrile" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7N2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H70N1O8P1" hasOnlySubstanceUnits="true" id="M_pe161_c" metaid="b4642c87-1848-4d86-a0e9-43f209ea22f7" name="phosphatidylethanolamine__dihexadec_9enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H70N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H70N1O8P1" hasOnlySubstanceUnits="true" id="M_pe161_p" metaid="_06e1ce0a-e5fd-4faa-bb0a-10460b9bbb83" name="phosphatidylethanolamine__dihexadec_9enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H70N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O12P3" hasOnlySubstanceUnits="true" id="M_datp_c" metaid="c8230291-6069-4824-b5c3-bd4a92f40ceb" name="dATP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O12P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O8P" hasOnlySubstanceUnits="true" id="M_nmn_p" metaid="_90a0300f-a58a-43a6-bdaa-a8f418893a53" name="M_nmn_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H14N2O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H27N3O7" hasOnlySubstanceUnits="true" id="M_mincyc_p" metaid="_9eec1621-5626-4005-9798-12f0bd29d07d" name="minocycline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H27N3O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H27N3O7" hasOnlySubstanceUnits="true" id="M_mincyc_e" metaid="_97f9c245-fc34-4fdc-82cc-125c0a03dba5" name="minocycline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H27N3O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H31N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hhexACP_c" metaid="_99f7a9f7-c421-452d-a75f-4e1fc7a93682" name="R__3_Hydroxyhexanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H31N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O8P" hasOnlySubstanceUnits="true" id="M_nmn_c" metaid="c527a149-b573-43fd-a723-0b38da30fd60" name="NMN" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H14N2O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O8P" hasOnlySubstanceUnits="true" id="M_nmn_e" metaid="b74a8305-5c42-4e87-93fe-43e5523f2d8c" name="M_nmn_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H14N2O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O6" hasOnlySubstanceUnits="true" id="M_dkglc_c" metaid="_0aff4c17-50d4-459d-8d62-799a5a7a6700" name="2_deoxy_5_keto_D_gluconate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13N3O3" hasOnlySubstanceUnits="true" id="M_citr_L_c" metaid="b702e36d-a82d-44d2-b37e-3c02741b65b2" name="L_Citrulline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13N3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H66O10P1" hasOnlySubstanceUnits="true" id="M_pg140_c" metaid="c76e89dc-a277-4202-95f8-3ae6b5867643" name="Phosphatidylglycerol__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H66O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H14N5O8P" hasOnlySubstanceUnits="true" id="M_25drapp_c" metaid="e80af714-1c96-4b5b-bdb7-2687affcb2e8" name="2_5_Diamino_6__ribosylamino__4__3H__pyrimidinone_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H14N5O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5O3" hasOnlySubstanceUnits="true" id="M_4hbz_c" metaid="_01257ba0-9cfe-4e3c-92a6-a1755daa91fc" name="4_Hydroxybenzoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N5O20P5" hasOnlySubstanceUnits="true" id="M_gdptp_c" metaid="_74530af1-b0ef-4b97-8d8d-d032e3302ef1" name="Guanosine_3__diphosphate_5__triphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N5O20P5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7N" hasOnlySubstanceUnits="true" id="M_indole_p" metaid="c4486849-9f1e-493a-a783-f4e0f11b44a3" name="M_indole_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H7N</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N4OR" hasOnlySubstanceUnits="true" id="M_argtrna_c" metaid="a29f6a64-1972-4bdd-ab20-a07401403bd7" name="L_Arginyl_tRNA_Arg_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N4OR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="S2Fe2" hasOnlySubstanceUnits="true" id="M_2fe2s_c" metaid="_042234e1-a6d4-4292-b6e0-44286a168d5f" name="2Fe_2S__iron_sulfur_cluster" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: S2Fe2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H36FeN4O16" hasOnlySubstanceUnits="true" id="M_sheme_c" metaid="_44458f90-77ca-472f-9d9c-544e52c2a5c1" name="M_sheme_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H36FeN4O16</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H7O3S" hasOnlySubstanceUnits="true" id="M_2kmb_c" metaid="dc176f49-8ff2-46a7-8d86-9197a8296b77" name="M_2kmb_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H7O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H6N2O" hasOnlySubstanceUnits="true" id="M_ncam_c" metaid="_069e618e-c1cd-4e94-8c46-163f9c8650ee" name="Nicotinamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H6N2O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H66O10P1" hasOnlySubstanceUnits="true" id="M_pg140_p" metaid="_21d0ab57-2ce0-4bb3-ac3b-3ccd08dd0f74" name="Phosphatidylglycerol__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H66O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C95H152N8O28P2" hasOnlySubstanceUnits="true" id="M_uaagmda_c" metaid="_839ad1c3-0c7f-4c19-acca-2baf0c1dfe00" name="Undecaprenyl_diphospho_N_acetylmuramoyl__N_acetylglucosamine__L_ala_D_glu_meso_2_6_diaminopimeloyl_D_ala_D_ala" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C95H152N8O28P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7N" hasOnlySubstanceUnits="true" id="M_indole_e" metaid="c7b03900-6569-43ef-b1d4-d52ac716312c" name="M_indole_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H7N</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO4" hasOnlySubstanceUnits="true" id="M_glu_L_c" metaid="c88ceaf9-ec64-4a8f-ad11-4f5278c32933" name="L_Glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N2O18P2" hasOnlySubstanceUnits="true" id="M_udpglcur_c" metaid="ee49d88c-916d-4d33-a508-9c2c2e573e93" name="UDP_D_glucuronate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H19N2O18P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4" hasOnlySubstanceUnits="true" id="M_dgsn_c" metaid="_8a68773e-a15e-434a-9255-30db16dd9f60" name="Deoxyguanosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N5O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O8P" hasOnlySubstanceUnits="true" id="M_gmp_c" metaid="_1fec28c5-4bfe-4f14-88cf-9c69eb01035b" name="GMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H20N3O8S" hasOnlySubstanceUnits="true" id="M_lgt_S_c" metaid="_0f9a8114-4c5e-4b9c-96bb-3f1fd1496125" name="R__S_Lactoylglutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C13H20N3O8S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H24N6O15P2" hasOnlySubstanceUnits="true" id="M_dnad_c" metaid="_54379ba1-6b67-419c-b014-16b8f6e4f0ec" name="Deamino_NAD_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H24N6O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H16NO5" hasOnlySubstanceUnits="true" id="M_pnto_R_c" metaid="a8479452-3800-4d7d-9011-e72a1d15395e" name="R__Pantothenate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H16NO5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CH3NO" hasOnlySubstanceUnits="true" id="M_frmd_c" metaid="_8fdc8aae-84a9-44e2-bfa6-b23c27efad70" name="Formamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH3NO</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H81O13P2" hasOnlySubstanceUnits="true" id="M_pgp180_c" metaid="_3c1a78a0-2626-4e14-a3f8-920fe080e89b" name="Phosphatidylglycerophosphate__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H81O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O3" hasOnlySubstanceUnits="true" id="M_glyclt_p" metaid="_008a959d-4c73-4490-9e90-bfaaa2800594" name="Glycolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="NO3" hasOnlySubstanceUnits="true" id="M_no3_p" metaid="a9461d95-59e4-4416-be08-825cfd9ab462" name="Nitrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42N7O17P3S" hasOnlySubstanceUnits="true" id="M_hxcoa_c" metaid="_62173060-2365-4b0a-844b-ebe9570612c9" name="Hexanoyl_CoA__n_C6_0CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H42N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H30N5O9" hasOnlySubstanceUnits="true" id="M_LalaDgluMdapDala_c" metaid="bf130d8a-ea65-4f7a-8fba-05c81f75a16c" name="L_alanine_D_glutamate_meso_2_6_diaminoheptanedioate_D_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H30N5O9</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O6" hasOnlySubstanceUnits="true" id="M_tartr_D_c" metaid="_3c55486e-a3b2-41b5-9259-17fa9bced04f" name="M_tartr_D_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_glc_D_p" metaid="fc4e897f-6c9e-4db6-9e88-e152a0314e66" name="D_Glucose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc3p_p" metaid="_3d54e1ba-ed15-451c-9697-d90757980854" name="Glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO4" hasOnlySubstanceUnits="true" id="M_glu_L_p" metaid="_2502dd0a-d150-47fd-8c37-bcf8aca3ee2e" name="L_Glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C114H172N22O59" hasOnlySubstanceUnits="true" id="M_murein5px4px4p_p" metaid="_982b8cc4-953e-4d0a-9e96-4b7c42b10abd" name="three_disacharide_linked_murein_units__pentapeptide_crosslinked_tetrapeptide__A2pm__D_ala__tetrapeptide_corsslinked_tetrapeptide__A2pm__D_ala____middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C114H172N22O59</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="XH2" hasOnlySubstanceUnits="true" id="M_dsbdrd_c" metaid="a64e1365-cc16-429a-b6d5-c065eab028b0" name="fused_thiol_disulfide_interchange_protein__reduced_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: XH2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO4" hasOnlySubstanceUnits="true" id="M_chitos_c" metaid="_2bcac2b8-afeb-48f4-ae21-030887e3a747" name="Chitosan" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="SFe2" hasOnlySubstanceUnits="true" id="M_2fe1s_c" metaid="_17a6cca5-606c-4941-b5d6-7835d25c528a" name="2Fe_1S__desulfurated_iron_sulfur_cluster" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: SFe2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O7P" hasOnlySubstanceUnits="true" id="M_e4p_c" metaid="_39835147-d3d9-49a8-885f-283d08d181fd" name="D_Erythrose_4_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H7O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc3p_e" metaid="e5abd030-9340-4a4e-bbbd-5b21d8656a66" name="Glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="NO3" hasOnlySubstanceUnits="true" id="M_no3_c" metaid="f978f7a7-8bf7-4482-b9c2-beca681339e9" name="Nitrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H55O4" hasOnlySubstanceUnits="true" id="M_2hp6mobq_me_c" metaid="_33497ea1-1610-4c76-9877-727932b040a4" name="2_Hexaprenyl_3_methyl_5_hydroxy_6_methoxy_1_4_benzoquinone" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H55O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O3" hasOnlySubstanceUnits="true" id="M_glyclt_e" metaid="_554d2a97-1bee-4264-9fa6-09be7456bcbb" name="Glycolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O3" hasOnlySubstanceUnits="true" id="M_glyclt_c" metaid="_65b2183a-ddcf-4381-9de2-a107d713f3a8" name="Glycolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H30N5O9" hasOnlySubstanceUnits="true" id="M_LalaDgluMdapDala_p" metaid="_1d4db780-a420-49a8-83b6-7216e38f38dd" name="L_alanine_D_glutamate_meso_2_6_diaminoheptanedioate_D_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H30N5O9</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="NO3" hasOnlySubstanceUnits="true" id="M_no3_e" metaid="e581c969-9254-4298-8248-0014f6c0c620" name="Nitrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc3p_c" metaid="_6feed938-b90a-4460-8d02-c8d50ef986ac" name="Glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H81O13P2" hasOnlySubstanceUnits="true" id="M_pgp180_p" metaid="_2858a7ce-a73d-4680-9ac4-c5dac0db95a5" name="Phosphatidylglycerophosphate__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H81O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO4" hasOnlySubstanceUnits="true" id="M_glu_L_e" metaid="b2a967d6-406d-4bcc-ab0f-b663177bbcdc" name="L_Glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H31N2O10PRS" hasOnlySubstanceUnits="true" id="M_epmeACP_c" metaid="_21d1ec1b-e598-4833-9f17-a385008ae05b" name="Enoylpimeloyl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H31N2O10PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="H2" hasOnlySubstanceUnits="true" id="M_h2_p" metaid="f9691f5b-e9a3-46e9-ba1f-01fc7b113133" name="M_h2_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_glc_D_c" metaid="_6565bacc-687b-449e-a5f4-9ca05d63f802" name="D_Glucose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_glc_D_e" metaid="_72aab22e-24dc-4b6f-8b30-b0522ba63937" name="D_Glucose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NOR" hasOnlySubstanceUnits="true" id="M_phetrna_c" metaid="c3fe7524-0ceb-4b49-936a-7221e11250e1" name="L_Phenylalanyl_tRNA_Phe_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11NOR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H53N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ooctdACP_c" metaid="_13fdd979-fb86-4511-bba9-1aac7d2c3f2e" name="3_Oxooctadecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H53N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O7" hasOnlySubstanceUnits="true" id="M_glcn_c" metaid="cb536510-dcdf-4b75-a366-17ae03734737" name="D_Gluconate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O2" hasOnlySubstanceUnits="true" id="M_ppa_c" metaid="_9674bdfc-fb67-4d2a-8e5a-6b29aa955e0e" name="Propionate__n_C3_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H18NO8" hasOnlySubstanceUnits="true" id="M_acmum_p" metaid="_8d4998e5-1b2b-460a-b8bd-129c29763583" name="M_acmum_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H18NO8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H74O10P1" hasOnlySubstanceUnits="true" id="M_pg160_c" metaid="_121f3ff0-ac59-41a0-a978-2201a7442d0c" name="Phosphatidylglycerol__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H74O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6NO6P" hasOnlySubstanceUnits="true" id="M_pser_L_c" metaid="e14edc1e-83a9-4b8f-8b17-a9be3ffae083" name="O_Phospho_L_serine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H6NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3" hasOnlySubstanceUnits="true" id="M_athr_L_c" metaid="_1c12eff7-8faa-474b-a5cd-871c7482cb12" name="L_Allo_threonine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3S" hasOnlySubstanceUnits="true" id="M_cgly_p" metaid="_3f734818-c32c-4729-a252-3045cff50a39" name="Cys_Gly" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10N2O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N6O5S" hasOnlySubstanceUnits="true" id="M_ahcys_c" metaid="_303ab19e-02a1-48ac-8d2c-e25e1dbe9c1e" name="S_Adenosyl_L_homocysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H20N6O5S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="H2" hasOnlySubstanceUnits="true" id="M_h2_e" metaid="bcf85acc-a44f-467a-9cc5-c5e5f281e208" name="M_h2_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45N2O8PRS" hasOnlySubstanceUnits="true" id="M_tdeACP_c" metaid="_83fee56a-50df-467a-8ab0-75d7032b0bcb" name="cis_tetradec_7_enoyl__acyl_carrier_protein___n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H45N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H2" hasOnlySubstanceUnits="true" id="M_h2_c" metaid="_2155aa07-cf0e-4b2f-a153-5d4c88585a86" name="H2" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10N2O11P" hasOnlySubstanceUnits="true" id="M_orot5p_c" metaid="_39237433-67e9-4f38-a4bd-d779b10786ce" name="Orotidine_5__phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H10N2O11P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_man1p_c" metaid="_3c7cb235-19e6-4f35-8408-9af3a85ca92b" name="D_Mannose_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="XH" hasOnlySubstanceUnits="true" id="M_flxr_c" metaid="_7a8b6c4f-b4c2-4987-9e52-5356b96bfc4b" name="M_flxr_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: XH</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O3" hasOnlySubstanceUnits="true" id="M_3mop_c" metaid="a523d445-008c-4f73-91d3-478484d82d72" name="S__3_Methyl_2_oxopentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H56FeN4O5" hasOnlySubstanceUnits="true" id="M_hemeO_c" metaid="_0862868f-02c0-4967-861e-a89874c6b49a" name="Heme_O" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C49H56FeN4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O7" hasOnlySubstanceUnits="true" id="M_glcn_p" metaid="_30675c26-1429-4eb7-a42f-3b346589fbef" name="D_Gluconate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H74O10P1" hasOnlySubstanceUnits="true" id="M_pg160_p" metaid="_41f5eda1-869c-44af-a7a1-e2ee7a28e24f" name="Phosphatidylglycerol__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H74O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3S" hasOnlySubstanceUnits="true" id="M_cgly_c" metaid="_8f4859cd-9f82-4c9a-88b1-2dd331db4644" name="Cys_Gly" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10N2O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O4" hasOnlySubstanceUnits="true" id="M_fum_c" metaid="_31430382-6fc5-4576-ae42-16748a9951bf" name="Fumarate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_f6p_c" metaid="e58dcf26-8f99-4c9c-a634-506b81f9fb2a" name="D_Fructose_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47N2O8PRS" hasOnlySubstanceUnits="true" id="M_t3c9palmeACP_c" metaid="_9aeb9984-cc71-424e-8288-087fa414f07d" name="trans_3_cis_9_palmitoleoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H47N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O4" hasOnlySubstanceUnits="true" id="M_fum_e" metaid="fc9ab27f-4e10-4baa-b4d7-a2d9134f3e3f" name="Fumarate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_ru5p_L_c" metaid="_5aa83291-7ce9-4bc9-909f-2193bc0ed427" name="M_ru5p_L_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12Cl2N2O5" hasOnlySubstanceUnits="true" id="M_cm_p" metaid="_397a31ba-d391-49b7-b384-000d062a6aaa" name="Chloramphenicol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12Cl2N2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H58N4O12" hasOnlySubstanceUnits="true" id="M_rfamp_e" metaid="_352e74f1-4166-49d0-bb20-fb3eb7aeb53f" name="rifampin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C43H58N4O12</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C1O2X" hasOnlySubstanceUnits="true" id="M_moadcoo_c" metaid="a8316226-bed9-4f26-93a8-6be58383b8b6" name="MoaD_Protein_with_carboxylate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C1O2X</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51N2O8PRS" hasOnlySubstanceUnits="true" id="M_palmACP_c" metaid="_3762fc7b-6549-4a88-9003-48b60822fd9b" name="Palmitoyl_ACP__n_C16_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H51N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12Cl2N2O5" hasOnlySubstanceUnits="true" id="M_cm_e" metaid="_9a640f21-052a-4b92-9827-f460860e5f2a" name="Chloramphenicol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12Cl2N2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H58N4O12" hasOnlySubstanceUnits="true" id="M_rfamp_p" metaid="_9e523d1e-bcfb-4063-b0b4-9b52feb69de7" name="rifampin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C43H58N4O12</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O4" hasOnlySubstanceUnits="true" id="M_fum_p" metaid="_074c5051-13ae-413f-946f-848579c350a9" name="Fumarate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7NO3" hasOnlySubstanceUnits="true" id="M_2aobut_c" metaid="_846910d3-7931-4ddb-9936-20ee14b3ad7e" name="L_2_Amino_3_oxobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H7NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H64O5" hasOnlySubstanceUnits="true" id="M_12dgr161_c" metaid="_73cd75d1-afde-4e2b-9ae1-eee238056f1f" name="1_2_Diacyl_sn_glycerol__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H64O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H51N2O8PRS" hasOnlySubstanceUnits="true" id="M_t3c11vaceACP_c" metaid="_2e9bdb87-6192-421d-bd4b-73afeb5524eb" name="trans_3_cis_11_vacceoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H51N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12NO9P" hasOnlySubstanceUnits="true" id="M_nicrnt_c" metaid="cf878e02-dec2-4a25-aafa-e0c88bc7cc46" name="Nicotinate_D_ribonucleotide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12NO9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O7" hasOnlySubstanceUnits="true" id="M_icit_p" metaid="_2ea942c4-3bb3-4f7b-a6d2-b3dd291513f3" name="M_icit_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H5O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H24N2O8" hasOnlySubstanceUnits="true" id="M_ttrcyc_p" metaid="c872ba42-6e97-4150-8915-a81262ca281c" name="tetracycline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C22H24N2O8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O10P2" hasOnlySubstanceUnits="true" id="M_13dpg_c" metaid="_270a294f-95f4-44eb-b2b5-d1521a2fff09" name="3_Phospho_D_glyceroyl_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H4O10P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H24N2O8" hasOnlySubstanceUnits="true" id="M_ttrcyc_e" metaid="f670aae4-f0dd-4f6b-8ed1-a4fa8390d25a" name="tetracycline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C22H24N2O8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H53N2O8PRS" hasOnlySubstanceUnits="true" id="M_toctd2eACP_c" metaid="_8280755e-4003-4945-8e15-4f0cb979c977" name="trans_octadec_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H53N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O4" hasOnlySubstanceUnits="true" id="M_2ahbut_c" metaid="d2a9e733-d780-46e4-830b-4945c038cd20" name="S__2_Aceto_2_hydroxybutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H122O61" hasOnlySubstanceUnits="true" id="M_dextrin_e" metaid="aba1bc8e-b8b7-490e-956a-4dee1f2680ab" name="M_dextrin_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C72H122O61</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O6" hasOnlySubstanceUnits="true" id="M_g15l_p" metaid="_0a17ce51-04cc-417a-ab06-c85a5e0c8db2" name="D_Glucono_1_5_lactone" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H10O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O7" hasOnlySubstanceUnits="true" id="M_icit_c" metaid="_390ea3f2-ac4d-4790-9ee7-cdb1988ba3c1" name="Isocitrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H5O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaarg_c" metaid="_46cb99e1-98d9-44f4-8f95-544977a6f5e7" name="tRNA_Arg_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O6PS" hasOnlySubstanceUnits="true" id="M_dkmpp_c" metaid="d3778e9a-8347-4952-b345-6ecea063cafe" name="M_dkmpp_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O6PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H16NO7" hasOnlySubstanceUnits="true" id="M_anhm_c" metaid="d8f281e8-5887-440f-9c17-f97971d3c49e" name="1_6_anhydrous_N_Acetylmuramate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H16NO7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O3" hasOnlySubstanceUnits="true" id="M_dad_5_c" metaid="_162bf943-8215-436c-9a89-d5c63f6d3dfb" name="5__Deoxyadenosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Mn" hasOnlySubstanceUnits="true" id="M_mn2_e" metaid="_0ea01ae0-7a5d-47a4-8207-c196a812ded6" name="Mn2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Mn</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Mn" hasOnlySubstanceUnits="true" id="M_mn2_c" metaid="_83d9933b-0372-4a51-bfc7-169bdd775534" name="Manganese_II_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Mn</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O6" hasOnlySubstanceUnits="true" id="M_dglca_c" metaid="_03dac608-6eae-4ee4-91b3-0618ed2fc166" name="5_deoxy_D_glucuronate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O3" hasOnlySubstanceUnits="true" id="M_lac_D_c" metaid="_92fe2025-bab0-45f4-89f0-5a654c84b81c" name="D_Lactate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O3" hasOnlySubstanceUnits="true" id="M_dhbpt_c" metaid="_2ef223f7-d5f3-4373-8f36-0fbb847f6ab2" name="6_7_Dihydrobiopterin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H13N5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15N3O8P" hasOnlySubstanceUnits="true" id="M_fpram_c" metaid="_11f9ced6-220d-4c17-bd17-96e8243fe635" name="2__Formamido__N1__5_phospho_D_ribosyl_acetamidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H15N3O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H104N2O23P2" hasOnlySubstanceUnits="true" id="M_lipidA_XF_c" metaid="edce8bf3-d3c8-44d2-a24c-327cfbec2374" name="M_lipidA_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C56H104N2O23P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H2O6P" hasOnlySubstanceUnits="true" id="M_pep_c" metaid="_2765b289-a330-4856-81c4-71992fa0bb32" name="Phosphoenolpyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H2O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NOSR" hasOnlySubstanceUnits="true" id="M_mettrna_c" metaid="_94574803-7c62-41d4-8341-a609b551a430" name="L_Methionyl_tRNA__Met_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NOSR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Mn" hasOnlySubstanceUnits="true" id="M_mn2_p" metaid="_63cac064-c94d-4dde-b64a-11d3f308d2f5" name="Mn2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Mn</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H36N7O17P3S" hasOnlySubstanceUnits="true" id="M_ppcoa_c" metaid="a27fc8f7-130b-4386-849e-70cb867096c9" name="Propanoyl_CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C24H36N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H39N2O8PRS" hasOnlySubstanceUnits="true" id="M_t3c5ddeceACP_c" metaid="_4bc7d4c1-4433-455a-8181-396b0a525b28" name="trans_3_cis_5_dodecenoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H39N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H58N1O8P1" hasOnlySubstanceUnits="true" id="M_pe120_c" metaid="_2c84ea61-f646-49c6-ac1e-dbc1f2fdf85d" name="phosphatidylethanolamine__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H58N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N3O" hasOnlySubstanceUnits="true" id="M_histd_c" metaid="d5fb9dd9-a2f3-407e-9b0d-a719c112bc83" name="L_Histidinol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12N3O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H56O5" hasOnlySubstanceUnits="true" id="M_12dgr141_c" metaid="_16a0df8e-1911-417d-b125-2918f2299f9a" name="1_2_Diacyl_sn_glycerol__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H56O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H58N1O8P1" hasOnlySubstanceUnits="true" id="M_pe120_p" metaid="_2efe61fc-09ae-4a2b-b42e-7f9d89a4bb36" name="phosphatidylethanolamine__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H58N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H3NO4" hasOnlySubstanceUnits="true" id="M_quln_c" metaid="_7e704a7e-2d52-4f55-a31c-bb6bf13405bc" name="Quinolinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H3NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H2O6P" hasOnlySubstanceUnits="true" id="M_2pglyc_c" metaid="a9c779bc-73bb-429c-82ac-f1d5e8105b9e" name="2_Phosphoglycolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H2O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3" hasOnlySubstanceUnits="true" id="M_thr_L_e" metaid="_7ed40c3c-689a-4997-b5ad-0079ba185554" name="L_Threonine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3" hasOnlySubstanceUnits="true" id="M_thr_L_c" metaid="ccef9837-5d96-4e60-9c0c-2672a5629645" name="L_Threonine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H25O2" hasOnlySubstanceUnits="true" id="M_ttdcea_p" metaid="f59f3bc5-3c3c-4fd6-ae5b-939942a79ce0" name="tetradecenoate__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H25O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8O4" hasOnlySubstanceUnits="true" id="M_2ippm_c" metaid="d51257c2-db77-41ea-9b03-b8d41edcae98" name="2_Isopropylmaleate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H8O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO7P" hasOnlySubstanceUnits="true" id="M_glu5p_c" metaid="_4523a949-71c1-409d-9cba-ec22cd14f73c" name="L_Glutamate_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8NO7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4" hasOnlySubstanceUnits="true" id="M_26dap_M_e" metaid="_560a0eeb-b33c-4ace-aef9-bcac1be88ff4" name="M_26dap_M_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H14N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14NO5" hasOnlySubstanceUnits="true" id="M_gam_p" metaid="_7d19cc7c-930d-466e-845e-2aedfc790de2" name="M_gam_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H14NO5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H27N7O14P2" hasOnlySubstanceUnits="true" id="M_nadh_c" metaid="feac70b0-8dd4-49dd-9afb-0fc93df5401c" name="Nicotinamide_adenine_dinucleotide___reduced" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H27N7O14P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H25O2" hasOnlySubstanceUnits="true" id="M_ttdcea_e" metaid="bafb266d-7642-47fc-bdc2-40a2f41bf73b" name="tetradecenoate__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H25O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C63H103NO12P2" hasOnlySubstanceUnits="true" id="M_unaga_c" metaid="_97140357-6131-49e4-9c24-ca9e51a3081f" name="M_unaga_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C63H103NO12P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaphe_c" metaid="_36e668f0-8836-43fc-b8c4-e22366d250a1" name="tRNA_Phe_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O6P" hasOnlySubstanceUnits="true" id="M_damp_c" metaid="f801f755-6314-40e9-9e9d-68dd8967bcbf" name="dAMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4" hasOnlySubstanceUnits="true" id="M_26dap_M_p" metaid="_8537f091-4c5b-4e94-9386-71ef84199284" name="M_26dap_M_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H14N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H25O2" hasOnlySubstanceUnits="true" id="M_ttdcea_c" metaid="_7387439c-8c10-4deb-b715-adda9dd0959a" name="M_ttdcea_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H25O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14NO5" hasOnlySubstanceUnits="true" id="M_gam_e" metaid="bf3397ff-7c27-49cf-a5e5-8f48f161aba5" name="M_gam_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H14NO5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O4" hasOnlySubstanceUnits="true" id="M_din_c" metaid="_9c2d087d-1c06-4a51-9bc1-8b8202068d0c" name="Deoxyinosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H2O7P" hasOnlySubstanceUnits="true" id="M_3php_c" metaid="_0fb5b963-9894-4c7e-900d-7d5b7f4ccbb1" name="3_Phosphohydroxypyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H2O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4" hasOnlySubstanceUnits="true" id="M_26dap_M_c" metaid="_6b4708cc-8d37-4523-a33a-8a3f548e9865" name="meso_2_6_Diaminoheptanedioate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H14N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7NO3" hasOnlySubstanceUnits="true" id="M_aspsa_c" metaid="_1995c6c7-5118-4172-82bb-296c56d148c8" name="L_Aspartate_4_semialdehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H7NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="NO" hasOnlySubstanceUnits="true" id="M_no_c" metaid="f5066035-7862-4549-9d2b-5e71f281bf18" name="Nitric_oxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NO</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H74O3" hasOnlySubstanceUnits="true" id="M_2ommbl_c" metaid="_40ed71e3-12af-489c-a5e3-a5ba53cb72bc" name="2_Octaprenyl_3_methyl_6_methoxy__1_4_benzoquinol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C48H74O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25N4O8" hasOnlySubstanceUnits="true" id="M_LalaDgluMdap_p" metaid="e73ed5ad-98a2-4070-80bc-d3ece99cd822" name="L_alanine_D_glutamate_meso_2_6_diaminoheptanedioate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H25N4O8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="NO" hasOnlySubstanceUnits="true" id="M_no_e" metaid="a0e6dc03-ad15-426d-9a8e-80908dccacac" name="Nitric_oxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NO</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25N4O8" hasOnlySubstanceUnits="true" id="M_LalaDgluMdap_c" metaid="_8624a039-983f-4473-82b6-1b7be44491fa" name="L_alanine_D_glutamate_meso_2_6_diaminoheptanedioate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H25N4O8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CO" hasOnlySubstanceUnits="true" id="M_co_c" metaid="f711aaca-47ad-450e-8cca-6070cf65cd51" name="M_co_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CO</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O10P2" hasOnlySubstanceUnits="true" id="M_dcdp_c" metaid="d547ceea-a425-42bc-87d6-39f4026f90a9" name="dCDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N3O10P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2" hasOnlySubstanceUnits="true" id="M_for_e" metaid="_1cf5bbb7-1e75-4de6-bf05-dc6db17d2a86" name="Formate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CHO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H77N1O10P1" hasOnlySubstanceUnits="true" id="M_ps181_c" metaid="b0f4bfe5-188c-46b3-a87f-2c85f2a79d71" name="phosphatidylserine__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H77N1O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C87H139N7O23P2" hasOnlySubstanceUnits="true" id="M_uagmda_c" metaid="_52361ad1-ff9e-4601-b62f-10d13922c6b9" name="Undecaprenyl_diphospho_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C87H139N7O23P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O11P2" hasOnlySubstanceUnits="true" id="M_gdp_c" metaid="_4d576e1f-6b4a-47cc-963f-9390631ffd78" name="GDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O11P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O14P3" hasOnlySubstanceUnits="true" id="M_ctp_c" metaid="e2a3d3fa-1d81-45c3-8f1b-92f4ffeecca8" name="CTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N3O14P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4S" hasOnlySubstanceUnits="true" id="M_cyst_L_c" metaid="_04430647-1956-47c6-b6e4-6ddb82c1762f" name="L_Cystathionine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H14N2O4S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2" hasOnlySubstanceUnits="true" id="M_for_c" metaid="_90d52229-a7c1-4b06-b990-b044c20d6001" name="Formate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CHO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H22N2O17P2" hasOnlySubstanceUnits="true" id="M_udpg_c" metaid="_25040098-e003-4d31-b33b-a7110bc635b2" name="UDPglucose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H22N2O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8O14P3" hasOnlySubstanceUnits="true" id="M_prpp_c" metaid="_1fa598cf-8d1c-40fa-ae87-674bb649493b" name="5_Phospho_alpha_D_ribose_1_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8O14P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10N5O" hasOnlySubstanceUnits="true" id="M_preq1_c" metaid="_7561f96b-0fd2-4731-9323-d56c511ab333" name="7_aminomethyl_7_deazaguanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H10N5O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C73H132O17P2" hasOnlySubstanceUnits="true" id="M_clpn161_p" metaid="_563f51c7-0c46-4fc5-8a8d-ba9a4903ad18" name="cardiolipin__tetrahexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C73H132O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe3_e" metaid="_48392e55-55a3-43d1-b536-869f6a74fd42" name="Iron_3_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Fe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H56O5" hasOnlySubstanceUnits="true" id="M_12dgr141_p" metaid="_754f9919-8169-46b9-8786-2863fde130ee" name="M_12dgr141_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H56O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe3_c" metaid="_8a3ed28f-207c-43fe-b93d-1cc888d93a36" name="Iron_3_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Fe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H20NO6P" hasOnlySubstanceUnits="true" id="M_g3pc_p" metaid="_3038c5c8-ce15-40c6-abc5-8979b9a20954" name="sn_Glycero_3_phosphocholine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H20NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H72O3" hasOnlySubstanceUnits="true" id="M_2ombzl_c" metaid="_198940b7-84bf-4c2e-8459-5c043ce406c2" name="2_Octaprenyl_6_methoxy_1_4_benzoquinol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C47H72O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H33N2O8PRS" hasOnlySubstanceUnits="true" id="M_toct2eACP_c" metaid="a191ac13-d59a-4a6b-ae86-5a90fba15916" name="trans_Oct_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H33N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C120H186N24O63" hasOnlySubstanceUnits="true" id="M_murein5p5p5p_p" metaid="_58b3d38e-2db7-4756-83ac-4ccc4b40fed5" name="three_linked_disacharide_pentapeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C120H186N24O63</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10NO2SR" hasOnlySubstanceUnits="true" id="M_fmettrna_c" metaid="be2f4cde-d70c-4406-8a4e-b5a64ac4fcd0" name="N_Formylmethionyl_tRNA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H10NO2SR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="NO" hasOnlySubstanceUnits="true" id="M_no_p" metaid="b5ab317d-edc9-4068-9a7a-7877a6a0be75" name="Nitric_oxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NO</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H33N7O19P3S" hasOnlySubstanceUnits="true" id="M_malcoa_c" metaid="e598fbb1-d731-4b58-ac81-16ff15473763" name="Malonyl_CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C24H33N7O19P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe3_p" metaid="a6c68052-dae6-45cc-8564-bfa30186a4a8" name="Iron_3_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Fe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="X" hasOnlySubstanceUnits="true" id="M_dsbaox_p" metaid="_301d5e8f-ca9f-481d-8160-a26c73c5f724" name="periplasmic_protein_disulfide_isomerase_I__oxidized_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: X</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H35O7P1" hasOnlySubstanceUnits="true" id="M_1hdec9eg3p_c" metaid="f10511bc-e638-4271-9657-1a007c59f626" name="1_hexadec_9_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H35O7P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H3O3" hasOnlySubstanceUnits="true" id="M_pyr_e" metaid="_2d2e9441-87cd-4cb5-9dae-d9b322fab05c" name="Pyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39O7P1" hasOnlySubstanceUnits="true" id="M_1odec11eg3p_c" metaid="_355949af-0df1-4d5d-9200-f9726a162b09" name="1_octadec_11_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H39O7P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H3O3" hasOnlySubstanceUnits="true" id="M_pyr_c" metaid="_7a730f38-2843-43f2-a9c2-db9dbd8454a6" name="Pyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9NO8P" hasOnlySubstanceUnits="true" id="M_acg5p_c" metaid="_9587ca03-006b-4462-bba4-1653f9d3be4c" name="N_Acetyl_L_glutamyl_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H9NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO4" hasOnlySubstanceUnits="true" id="M_asp_L_c" metaid="_8ef34f64-9157-434e-9d4e-2f71a589e3a1" name="L_Aspartate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H6NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO4" hasOnlySubstanceUnits="true" id="M_asp_L_e" metaid="_97882726-764d-40b7-8ecd-54c5ae404ee5" name="L_Aspartate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H6NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H89O4P" hasOnlySubstanceUnits="true" id="M_udcpp_c" metaid="fbdecdc5-da38-4485-9402-e37a7ee8e96d" name="Undecaprenyl_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C55H89O4P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="H" hasOnlySubstanceUnits="true" id="M_h_p" metaid="dad4a909-6ffc-4ebb-a221-6e8a92044868" name="proton_H_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_L_p" metaid="_43a0d9fd-6b9b-4ece-a292-f121ca1df4ed" name="L_Alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H4NO2" hasOnlySubstanceUnits="true" id="M_nac_e" metaid="_43e8eaa8-5a8e-4ab1-9f04-6aa38022fcc0" name="Nicotinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H4NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3" hasOnlySubstanceUnits="true" id="M_glu5sa_c" metaid="_0902e050-92cb-4616-b47f-da9cba6a8230" name="L_Glutamate_5_semialdehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H4NO2" hasOnlySubstanceUnits="true" id="M_nac_c" metaid="c2dbb7ce-9fe2-454a-af2e-5fb6ab06ed23" name="Nicotinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H4NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="X" hasOnlySubstanceUnits="true" id="M_grxox_c" metaid="fc14c6e0-1cb3-43ed-bf25-0050931862ea" name="glutaredoxin__oxidized_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: X</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H72O5" hasOnlySubstanceUnits="true" id="M_12dgr181_c" metaid="_37ab8510-c554-4d80-877b-373eb15f23bf" name="1_2_Diacyl_sn_glycerol__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H72O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H4NO2" hasOnlySubstanceUnits="true" id="M_nac_p" metaid="a45e0051-33de-4c18-9c02-cb86aed92e9c" name="Nicotinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H4NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H89O4P" hasOnlySubstanceUnits="true" id="M_udcpp_p" metaid="_07c547ef-ba13-4bff-bbab-46534805b2a6" name="Undecaprenyl_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C55H89O4P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H72O5" hasOnlySubstanceUnits="true" id="M_12dgr181_p" metaid="_7df07bcf-bf48-4acf-a654-02364352ec1e" name="M_12dgr181_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H72O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H31N9O15P2" hasOnlySubstanceUnits="true" id="M_fad_c" metaid="cd16f790-67a3-4fc2-a2cd-aecf6e72c44a" name="Flavin_adenine_dinucleotide_oxidized" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H31N9O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O7P2" hasOnlySubstanceUnits="true" id="M_dmpp_c" metaid="b2544a1f-0dc7-49d5-9a1b-18fa03419b09" name="Dimethylallyl_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO7P" hasOnlySubstanceUnits="true" id="M_4pasp_c" metaid="_53e3625c-2d16-4306-9cb8-acf6724f9cd6" name="4_Phospho_L_aspartate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H6NO7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H13N6O3" hasOnlySubstanceUnits="true" id="M_dhpt_c" metaid="_0c240f4f-7f99-4dbc-ac4b-d27d264700ae" name="Dihydropteroate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H13N6O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ocmrs7eACP_c" metaid="e8804b0a-f001-40a8-b73c-7f148cd1c30e" name="3_oxo_cis_myristol_7_eoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H43N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO3R" hasOnlySubstanceUnits="true" id="M_glutrna_c" metaid="c63b44f5-a227-40a5-8110-461e7664c5e2" name="L_Glutamyl_tRNA_Glu_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8NO3R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O5" hasOnlySubstanceUnits="true" id="M_oaa_c" metaid="_54e0d9f5-b91e-48f1-b964-c6d4504b8933" name="Oxaloacetate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_L_c" metaid="a136a98d-77aa-4926-b835-cb7b7364bd5b" name="L_Alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O6" hasOnlySubstanceUnits="true" id="M_xtsn_c" metaid="_13634181-c76a-4a81-b729-e1e18323b2ec" name="Xanthosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O5" hasOnlySubstanceUnits="true" id="M_oaa_e" metaid="_39f1b8aa-d3a3-4cb2-84a8-96c9406e664e" name="M_oaa_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaala_c" metaid="_241262b3-1524-4949-b2f2-307c77e80759" name="tRNA_Ala_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O3" hasOnlySubstanceUnits="true" id="M_3hpp_p" metaid="_1cd48d3e-3831-4e76-ac5c-b6237e335ed3" name="3_Hydroxypropanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_L_e" metaid="e2883b30-80ea-47a4-a3a5-03271a3893cd" name="L_Alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_mi1p_D_c" metaid="f1cf004a-6ae1-4dfa-8855-6d68f21c58fe" name="1D_myo_Inositol_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6NO5S2" hasOnlySubstanceUnits="true" id="M_scys_L_c" metaid="_7ebc2b90-6180-45f7-bd7b-7121cc072a5e" name="S_Seleno_L_cysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H6NO5S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O5" hasOnlySubstanceUnits="true" id="M_oaa_p" metaid="_0c6ba5c2-a68f-4439-9bb4-e7b1077b2030" name="M_oaa_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N3O9P" hasOnlySubstanceUnits="true" id="M_5aizc_c" metaid="e0424e3d-345a-4d11-881b-4500f38d4b43" name="5_amino_1__5_phospho_D_ribosyl_imidazole_4_carboxylate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N3O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaval_c" metaid="_9307e0c3-9ddb-4e62-ae32-9693117c070e" name="tRNA_Val_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H7O4" hasOnlySubstanceUnits="true" id="M_dhna_c" metaid="c6a93da8-05cc-4361-bfec-283bfdd5c597" name="M_dhna_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H7O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51O8P1" hasOnlySubstanceUnits="true" id="M_pa120_p" metaid="e3fff18b-7796-462c-98e1-3d485f513e96" name="1_2_didodecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H51O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O3" hasOnlySubstanceUnits="true" id="M_3hpp_e" metaid="b0d55aa8-bf10-42c8-b8ea-123b123a6cdf" name="3_Hydroxypropanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H" hasOnlySubstanceUnits="true" id="M_h_c" metaid="_68418409-f335-431c-8996-4d0f8aa940b0" name="proton_H_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O3" hasOnlySubstanceUnits="true" id="M_3hpp_c" metaid="c5750266-8367-4dcd-b8b6-0c79a496084e" name="3_Hydroxypropanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaglu_c" metaid="d6f2c2e1-8337-449e-a46c-53bb916b88db" name="tRNA__Glu_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_gal1p_c" metaid="f6679c5a-159e-4867-a60f-268f845fd101" name="alpha_D_Galactose_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="H" hasOnlySubstanceUnits="true" id="M_h_e" metaid="f1b6cbf1-69eb-4bd8-bc37-e876e4dc85e7" name="proton_H_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H3O7" hasOnlySubstanceUnits="true" id="M_osucc_c" metaid="_4a139b8b-b190-4e29-8295-00af65fb89c0" name="M_osucc_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H3O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="XH" hasOnlySubstanceUnits="true" id="M_flxso_c" metaid="_140e86df-cba4-483b-8e4d-ea8c89da50a2" name="M_flxso_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: XH</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51O8P1" hasOnlySubstanceUnits="true" id="M_pa120_c" metaid="a35ecd9e-5d62-4720-9a48-86c83d293bd9" name="1_2_didodecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H51O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O3S2" hasOnlySubstanceUnits="true" id="M_tsul_c" metaid="d5bf1430-b236-471e-bffd-330ad08312c6" name="Thiosulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O3S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N2O2" hasOnlySubstanceUnits="true" id="M_lys_L_c" metaid="fa6e293e-3fc4-40c4-b78f-a3ceef2b3e7d" name="L_Lysine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N2O2" hasOnlySubstanceUnits="true" id="M_lys_L_e" metaid="_4ea2de50-4355-4717-98d8-2977165565eb" name="L_Lysine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="O3S2" hasOnlySubstanceUnits="true" id="M_tsul_e" metaid="b17c51b1-e8d8-4454-8a75-5cac7f4af518" name="Thiosulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O3S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="HO3P" hasOnlySubstanceUnits="true" id="M_ppt_p" metaid="f0b9118e-7dd4-4e5b-a9a9-1599f516994b" name="M_ppt_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HO3P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4O5" hasOnlySubstanceUnits="true" id="M_akg_c" metaid="ef5bb962-1082-46f1-90e2-7b6c96207e48" name="2_Oxoglutarate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O15P3" hasOnlySubstanceUnits="true" id="M_xtp_c" metaid="_4c1d2621-fb1a-4c64-96df-a2c128dc8ed0" name="XTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N4O15P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8N2O2" hasOnlySubstanceUnits="true" id="M_acybut_c" metaid="_409ab852-6cdf-4bd0-a2b1-99105412ba43" name="gamma_Amino_gamma_cyanobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NOR" hasOnlySubstanceUnits="true" id="M_protrna_c" metaid="_12a0bbef-367e-4a3f-a6ce-427bceda6fd3" name="L_Prolyl_tRNA_Pro_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NOR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="O3S2" hasOnlySubstanceUnits="true" id="M_tsul_p" metaid="_3b16619b-907b-45e5-a6da-20824985c4e5" name="Thiosulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O3S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H39N4O16" hasOnlySubstanceUnits="true" id="M_scl_c" metaid="c7883cb2-fde3-45fa-91b6-770f6b03edcb" name="sirohydrochlorin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H39N4O16</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8O5" hasOnlySubstanceUnits="true" id="M_3c4mop_c" metaid="d5d937ae-07a7-41fa-a701-79824c479f48" name="3_Carboxy_4_methyl_2_oxopentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H8O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N2O11P2" hasOnlySubstanceUnits="true" id="M_dtdp_c" metaid="eb377850-c371-43a8-9858-d993a35f49e9" name="dTDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N2O11P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N2O2" hasOnlySubstanceUnits="true" id="M_lys_L_p" metaid="_2e07cfe9-2dca-49f6-b2a4-e17cae15f282" name="L_Lysine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4O5" hasOnlySubstanceUnits="true" id="M_akg_e" metaid="_6411d276-b49e-4441-9c4c-c94102396cce" name="2_Oxoglutarate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H12N2O5P" hasOnlySubstanceUnits="true" id="M_pyam5p_c" metaid="f650fd4e-8782-49c2-bda0-c40585363fee" name="Pyridoxamine_5__phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H12N2O5P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NOR" hasOnlySubstanceUnits="true" id="M_alatrna_c" metaid="e56d57ec-8f7a-440b-a12b-6e4631b95919" name="L_Alanyl_tRNA_Ala_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NOR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4O5" hasOnlySubstanceUnits="true" id="M_akg_p" metaid="a67f052f-35bd-43c1-adb8-4e43508bf222" name="2_Oxoglutarate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H46N7O17P3S" hasOnlySubstanceUnits="true" id="M_occoa_c" metaid="_0f007fc3-d373-4035-a2a1-4ea49468e43a" name="Octanoyl_CoA__n_C8_0CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H46N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O12P2" hasOnlySubstanceUnits="true" id="M_tagdp_D_c" metaid="_894c8e6c-31b5-4de0-bf03-4652ee16400b" name="D_Tagatose_1_6_biphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H10O12P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H33N2O10PRS" hasOnlySubstanceUnits="true" id="M_pmeACP_c" metaid="db986ad5-99cc-40d9-9744-16526c914d14" name="Pimeloyl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H33N2O10PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O8P" hasOnlySubstanceUnits="true" id="M_imp_c" metaid="d69bee01-9927-4531-8711-2d454cad6a4a" name="IMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N4O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N6O5Se" hasOnlySubstanceUnits="true" id="M_seahcys_c" metaid="_4258087e-c242-4d51-9ebb-48744feb508d" name="Se_Adenosylselenohomocysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H20N6O5Se</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H82O10P1" hasOnlySubstanceUnits="true" id="M_pg180_c" metaid="_96c00e78-4cd1-43d7-8325-80821e27a87e" name="Phosphatidylglycerol__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H82O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H33N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ooctACP_c" metaid="c85f425a-ae23-4a02-b515-8ba08eda764e" name="3_Oxooctanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H33N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H29N2O11PRS" hasOnlySubstanceUnits="true" id="M_hgmeACP_c" metaid="_6e93e55a-7e7f-4345-9c06-863a26d45a85" name="3_Hydroxyglutaryl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H29N2O11PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17O7P2" hasOnlySubstanceUnits="true" id="M_grdp_c" metaid="_49fb8505-c10b-486b-82f3-5692426ba994" name="Geranyl_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H17O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H23N5O16P2" hasOnlySubstanceUnits="true" id="M_gdpmann_c" metaid="de438222-54cc-4726-952e-75035bf84528" name="GDP_D_mannose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H23N5O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H3O3" hasOnlySubstanceUnits="true" id="M_pyr_p" metaid="c4099479-3078-4c0b-8bff-7948647ffa56" name="Pyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HS2R" hasOnlySubstanceUnits="true" id="M_iscssh_c" metaid="_5ba18a87-4bba-4353-95f1-513b68844dfa" name="IscS_with_bound_sulfur" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HS2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12O13P2" hasOnlySubstanceUnits="true" id="M_s17bp_c" metaid="dba98b8f-c61e-49d1-a284-4714f266848d" name="M_s17bp_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H12O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H82O10P1" hasOnlySubstanceUnits="true" id="M_pg180_p" metaid="_6bd73a39-fbae-4d25-bdc5-5fd6441fda1d" name="Phosphatidylglycerol__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H82O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47N2O8PRS" hasOnlySubstanceUnits="true" id="M_myrsACP_c" metaid="df44ad25-ac95-45d0-9647-879f707a7471" name="Myristoyl_ACP__n_C14_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H47N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H56N8O27P2" hasOnlySubstanceUnits="true" id="M_um4p_c" metaid="a0d3e7b3-1f92-41ea-8f6c-ba87600e87fb" name="UDP_N_acetylmuramoyl_L_alanyl_D_gamma_glutamyl_meso_2_6_diaminopimelate_D_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H56N8O27P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14NO9P" hasOnlySubstanceUnits="true" id="M_acgam6p_c" metaid="dc2c18e5-6558-4019-ad49-1e3b80ebef8c" name="N_Acetyl_D_glucosamine_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H14NO9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="XH2" hasOnlySubstanceUnits="true" id="M_dsbgrd_p" metaid="eff717fd-49e3-488e-8606-499039426a48" name="M_dsbgrd_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: XH2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_leu_L_p" metaid="_815c4d68-bc29-42b2-aee9-6e71f5fd471e" name="L_Leucine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="AsO4" hasOnlySubstanceUnits="true" id="M_aso4_c" metaid="e0a1b8f9-6211-4b7a-b8bb-01cd95f33365" name="Arsenate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: AsO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="X" hasOnlySubstanceUnits="true" id="M_dsbcox_p" metaid="_20ca6384-7107-4748-920a-e081ce8740bf" name="protein_disulfide_isomerase_II__oxidized_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: X</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_D_c" metaid="_1d0c9062-4b33-4ade-836b-0f41149578d2" name="M_cys_D_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C81H148O17P2" hasOnlySubstanceUnits="true" id="M_clpn181_p" metaid="_1c51d3b9-7219-4a23-a8cd-4d419ce90c58" name="cardiolipin__tetraoctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C81H148O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_D_e" metaid="b01d433a-64f0-4020-a983-b8e0634c2f39" name="M_cys_D_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5NO4S" hasOnlySubstanceUnits="true" id="M_3sala_c" metaid="_63991681-2ab2-40a1-8153-0d0cfba427e9" name="M_3sala_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5NO4S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_leu_L_e" metaid="_567f5eb0-dc47-4e7a-853f-e3754d6e0810" name="L_Leucine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H18N2O16P2" hasOnlySubstanceUnits="true" id="M_udpLa4o_c" metaid="_73df25c6-e744-404d-a867-5f34259d0693" name="M_udpLa4o_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H18N2O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H64O5" hasOnlySubstanceUnits="true" id="M_12dgr161_p" metaid="_82d8a338-3515-4257-84e3-2e9c6b224bb1" name="M_12dgr161_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H64O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_leu_L_c" metaid="b0ac6125-caf8-4276-8069-6f5d009bead4" name="L_Leucine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5N" hasOnlySubstanceUnits="true" id="M_bzonit_c" metaid="_75292c17-90aa-4b78-9352-2043ad74c04d" name="Benzonitrile" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5N</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N3O4P" hasOnlySubstanceUnits="true" id="M_4ampm_c" metaid="_26c01e93-50ec-4b08-a1e1-191ffe0bc728" name="4_Amino_2_methyl_5_phosphomethylpyrimidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H8N3O4P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H29N2O12" hasOnlySubstanceUnits="true" id="M_anhgm_c" metaid="_77e3b37d-7cba-4b89-94ee-8fd98c3abce5" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramic_acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H29N2O12</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H126N2O37P2" hasOnlySubstanceUnits="true" id="M_kdo2lipid4_XF_c" metaid="_60e9bc22-f9f6-4f58-8f58-98f644ba003f" name="M_kdo2lipid4_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C72H126N2O37P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H114N14O40" hasOnlySubstanceUnits="true" id="M_murein5p3p_p" metaid="d096ffe1-da0f-4e1d-bd61-620f8fd34348" name="two_linked_disacharide_pentapeptide_and_tripeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C74H114N14O40</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O11P2" hasOnlySubstanceUnits="true" id="M_idp_c" metaid="_621697eb-74bf-4ad1-885c-c3c9cebb13c7" name="IDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N4O11P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6NO2" hasOnlySubstanceUnits="true" id="M_1pyr5c_c" metaid="_5a7d2518-c748-4b90-b2ee-4e14720b3e61" name="1_Pyrroline_5_carboxylate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H6NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H126N2O37P2" hasOnlySubstanceUnits="true" id="M_kdo2lipid4_XF_e" metaid="f14e0454-e072-40c1-879e-1965b3ff0fc7" name="M_kdo2lipid4_XF_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C72H126N2O37P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H13NO9P" hasOnlySubstanceUnits="true" id="M_pran_c" metaid="_51841d19-27f5-4c5a-b36c-f035d475c09d" name="N__5_Phospho_D_ribosyl_anthranilate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H13NO9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_xu5p_D_c" metaid="_907b93b7-6be0-44dd-9165-b1bc108b8e60" name="D_Xylulose_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H22N2O10PRS" hasOnlySubstanceUnits="true" id="M_malACP_c" metaid="e3f679de-fe9b-4b89-93ca-4d57782a66e6" name="Malonyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H22N2O10PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H3O3" hasOnlySubstanceUnits="true" id="M_msa_c" metaid="_0d762fd3-71c4-4529-b200-7bc4f8b1f35b" name="Malonate_semialdehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O6P" hasOnlySubstanceUnits="true" id="M_dhap_c" metaid="df0429d8-48ee-4ebd-8476-05f607e62cfb" name="Dihydroxyacetone_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O7" hasOnlySubstanceUnits="true" id="M_cit_c" metaid="_83a1b111-befa-49a2-84c4-ab6eb3cb52af" name="Citrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H5O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H29N2O12" hasOnlySubstanceUnits="true" id="M_anhgm_p" metaid="e768bf82-dfbd-493b-b2b8-fd48dd4b3921" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramic_acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H29N2O12</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N10O19P4" hasOnlySubstanceUnits="true" id="M_ap4a_c" metaid="_51621837-3db4-461c-ba68-daa702e55f16" name="P1_P4_Bis_5__adenosyl__tetraphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H24N10O19P4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5N2O2" hasOnlySubstanceUnits="true" id="M_urcan_c" metaid="_5c743639-01c9-4034-88a4-fd1a3a711f30" name="Urocanate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H5N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O7" hasOnlySubstanceUnits="true" id="M_cit_e" metaid="_1e3735ba-e736-42df-8d6f-8a9542a04881" name="Citrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H5O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H126N2O37P2" hasOnlySubstanceUnits="true" id="M_kdo2lipid4_XF_p" metaid="_865f8957-d223-4884-b75c-07b819961598" name="M_kdo2lipid4_XF_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C72H126N2O37P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H38N4O4" hasOnlySubstanceUnits="true" id="M_pppg9_c" metaid="a39d6345-6a0d-4358-9088-cf1204117095" name="Protoporphyrinogen_IX" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H38N4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H122O61" hasOnlySubstanceUnits="true" id="M_14aglucan_e" metaid="_43ccbf86-2d88-499a-9f01-2dd79b4d4a79" name="M_14aglucan_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C72H122O61</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H122O61" hasOnlySubstanceUnits="true" id="M_14aglucan_c" metaid="_5749ed56-6e05-4901-9b4b-b5dfee5733c8" name="1_4_alpha_D_Glucosyl_n" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C72H122O61</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NOR" hasOnlySubstanceUnits="true" id="M_glytrna_c" metaid="_4a83b6ff-cd79-43e3-8aa4-8e0d9bfde226" name="Glycyl_tRNA_Gly_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H5NOR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49N2O8PRS" hasOnlySubstanceUnits="true" id="M_hdeACP_c" metaid="da832ba9-9348-4a4b-9fcf-8128e12a24f7" name="cis_hexadec_9_enoyl__acyl_carrier_protein___n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H49N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O9P2" hasOnlySubstanceUnits="true" id="M_dadp_c" metaid="_0ea2039b-4061-4345-8af5-ada4eac793ec" name="dADP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O9P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H122O61" hasOnlySubstanceUnits="true" id="M_14aglucan_p" metaid="_906cd203-bd17-4164-9158-fbbed1e862ac" name="M_14aglucan_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C72H122O61</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O7" hasOnlySubstanceUnits="true" id="M_cit_p" metaid="d14e510b-4acd-44f7-88e3-d883529a9812" name="Citrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H5O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O2" hasOnlySubstanceUnits="true" id="M_hxa_c" metaid="efbea65b-9d47-4614-8b70-9ca95f446dc9" name="Hexanoate__n_C6_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnatyr_c" metaid="_1bd65fd4-64bf-4feb-a711-1460105a0c36" name="tRNA_Tyr_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="CH3O3S" hasOnlySubstanceUnits="true" id="M_mso3_e" metaid="fa3f8603-57c4-4e14-a648-8cd4efaddbc4" name="methanesulfonate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH3O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CH3O3S" hasOnlySubstanceUnits="true" id="M_mso3_c" metaid="ee1ab707-2158-424d-9184-aae220a5e737" name="methanesulfonate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH3O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4N2O2" hasOnlySubstanceUnits="true" id="M_ura_c" metaid="c46235c5-0aa5-444e-83e7-94c55e9f4e91" name="Uracil" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O14P" hasOnlySubstanceUnits="true" id="M_chtbs6p_c" metaid="_9bdd4880-3d07-4a9a-a72b-5cef7fac4128" name="M_chtbs6p_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H27N2O14P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H25N3O17P2" hasOnlySubstanceUnits="true" id="M_uacgam_c" metaid="b30f5402-fc0a-4542-81ec-6eb62f3d22d1" name="UDP_N_acetyl_D_glucosamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H25N3O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4N2O2" hasOnlySubstanceUnits="true" id="M_ura_e" metaid="ccfc70ef-41a5-42a6-81c1-b46663f039d8" name="M_ura_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H25N3O16P2" hasOnlySubstanceUnits="true" id="M_udpacfuc_c" metaid="d3296540-f850-4c00-8d52-8a6584778037" name="M_udpacfuc_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H25N3O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O2" hasOnlySubstanceUnits="true" id="M_hxa_p" metaid="aabefeb0-b032-4613-90e2-50e217087b0b" name="Hexanoate__n_C6_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="CH3O3S" hasOnlySubstanceUnits="true" id="M_mso3_p" metaid="a6f41b1d-5495-4a4a-81c6-a2f8f207215c" name="methanesulfonate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH3O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4N2O2" hasOnlySubstanceUnits="true" id="M_ura_p" metaid="_8bdfb689-18da-4a6b-8278-2a2c65065ca6" name="M_ura_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H59O8P1" hasOnlySubstanceUnits="true" id="M_pa140_c" metaid="_5a4391db-b9ee-403d-bbbf-69573a3f3e23" name="1_2_ditetradecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H59O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N5O10P2" hasOnlySubstanceUnits="true" id="M_pap_c" metaid="_6eda61d5-8a33-4a54-b717-9f489f619aca" name="Adenosine_3__5__bisphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N5O10P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnapro_c" metaid="_6922d10c-bdf3-4ac4-9008-42f8753800e1" name="tRNA_Pro_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_D_p" metaid="_4824fa5f-73d8-45e7-b781-7d9390953608" name="M_cys_D_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H14N2" hasOnlySubstanceUnits="true" id="M_ptrc_c" metaid="c453ad0a-9c46-44c6-99fc-d1a00c8a4979" name="Putrescine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H14N2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H14N2" hasOnlySubstanceUnits="true" id="M_ptrc_e" metaid="_9a6a8e7b-11d7-443a-a435-e3864359232b" name="Putrescine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H14N2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H16N4O4PS" hasOnlySubstanceUnits="true" id="M_thmmp_c" metaid="_13decc39-a41f-4a2e-a73a-36731e84d6d0" name="Thiamin_monophosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H16N4O4PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ocpalm9eACP_c" metaid="_0884f9ed-92ea-4902-b209-cc1a46219385" name="3_oxo_cis_palm_9_eoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H47N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_g6p_c" metaid="c4353cf2-27e9-4c56-b9ac-e5ee8c23e8dc" name="D_Glucose_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H59O8P1" hasOnlySubstanceUnits="true" id="M_pa140_p" metaid="_5d254239-e98b-4a67-bddc-19ff12646b0f" name="1_2_ditetradecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H59O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hmrsACP_c" metaid="_70619344-3e7b-4386-bb9f-0daba264f997" name="R__3_Hydroxytetradecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H47N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H14N2" hasOnlySubstanceUnits="true" id="M_ptrc_p" metaid="_86f3a98d-4598-4a29-85f5-f393f0e6e519" name="Putrescine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H14N2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H21N5O15P2" hasOnlySubstanceUnits="true" id="M_gdp4d6dm_c" metaid="a954935d-5ef2-4be6-9881-cd849b42fd81" name="M_gdp4d6dm_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H21N5O15P2</p> + </body> + </notes> + </species> + </listOfSpecies> + <listOfParameters> + <parameter constant="true" id="UPPER_BOUND_99999_0" units="mmol_per_gDW_per_hr" value="99999"/> + <parameter constant="true" id="LOWER_BOUND_0_0" units="mmol_per_gDW_per_hr" value="0"/> + <parameter constant="true" id="LOWER_BOUND_99999_0" units="mmol_per_gDW_per_hr" value="-99999"/> + </listOfParameters> + <listOfReactions> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUPRT" metaid="_14369fd2-8f83-4ef5-a5bc-80f277a1cbbf" name="glutamine_phosphoribosyldiphosphate_amidotransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000770</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 2.4.2.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_14369fd2-8f83-4ef5-a5bc-80f277a1cbbf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000770"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pram_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG180abcpp" metaid="_309b13d3-cbb6-4182-ac1d-46340890b347" name="phosphatidylglycerol_transport_via_ABC_system__n_C18_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_309b13d3-cbb6-4182-ac1d-46340890b347"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg180_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HYXNtex" metaid="fc02e5bf-c6fd-48eb-8077-c7b72c8d14ea" name="Hypoxanthine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fc02e5bf-c6fd-48eb-8077-c7b72c8d14ea"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hxan_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hxan_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LEUtex" metaid="_4335a7b1-bbd5-44dd-9c9a-ebcc1fa9676b" name="L_leucine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4335a7b1-bbd5-44dd-9c9a-ebcc1fa9676b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_leu_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_leu_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METTRS" metaid="ad24d68c-cf9b-45ab-abd3-56446f8d42ed" name="Methionyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006950</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ad24d68c-cf9b-45ab-abd3-56446f8d42ed"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnamet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mettrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_glu_L_e" metaid="_80df0d73-fb34-4b1b-b43b-cb5a2bc7c012" name="R_EX_glu_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_80df0d73-fb34-4b1b-b43b-cb5a2bc7c012"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUCYS" metaid="_82876c4f-119d-442e-8003-fd0b8b8c557f" name="gamma_glutamylcysteine_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003340</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_82876c4f-119d-442e-8003-fd0b8b8c557f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glucys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRAMPC" metaid="e5b61c92-a688-4271-af80-91f6cc7df401" name="phosphoribosyl_AMP_cyclohydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020260</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 3.5.4.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e5b61c92-a688-4271-af80-91f6cc7df401"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020260"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_prbamp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_prfp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_VALtex" metaid="_0813fcbe-e60c-4afd-ab14-2197c512b3a7" name="L_valine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0813fcbe-e60c-4afd-ab14-2197c512b3a7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_val_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_val_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE141abcpp" metaid="d06025bc-2fe5-4f60-9f7f-554494955a65" name="phosphatidylethanolamine_transport_via_ABC_system__n_C14_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d06025bc-2fe5-4f60-9f7f-554494955a65"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pe141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe141_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_MEOH" metaid="_103d41e9-a0d8-48d4-998c-2885cb732810" name="R_DM_MEOH" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_103d41e9-a0d8-48d4-998c-2885cb732810"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_meoh_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CU2tex" metaid="c67872a0-b10c-4820-85dc-1079bd7171f9" name="copper__Cu_2__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c67872a0-b10c-4820-85dc-1079bd7171f9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cu2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cu2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYC3Ptex" metaid="_24207fcd-c1e8-4a47-9993-82ceb08ce6a3" name="sn_Glycerol_3_phosphate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_24207fcd-c1e8-4a47-9993-82ceb08ce6a3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc3p_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc3p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SELGTHR" metaid="e1e2fe01-c3b9-4fa2-9d8c-63d260a5f5df" name="R_SELGTHR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e1e2fe01-c3b9-4fa2-9d8c-63d260a5f5df"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="4"/> + <speciesReference constant="true" species="M_slnt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gthox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_dgslnt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DXPS" metaid="_92a20d90-2d2e-469d-80f1-b4ef7ed6ae3a" name="1_deoxy_D_xylulose_5_phosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020600</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.2.1.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_92a20d90-2d2e-469d-80f1-b4ef7ed6ae3a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.2.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020600"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DMPO_LACCASE" metaid="f394e9de-d142-4627-8a3e-83ae22843555" name="Dimethoxyphenol_oxidase_laccase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013090</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.10.3.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f394e9de-d142-4627-8a3e-83ae22843555"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.10.3.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013090"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dmoxpol_c" stoichiometry="4"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_tmoxdpq_c" stoichiometry="4"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLTGY2pp" metaid="c93308b1-aad3-402b-a862-11afbb3fc3fd" name="murein_lytic_transglycosylase__murein4p3p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_003940 ) OR ( XFCFBP8418_019770 )</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c93308b1-aad3-402b-a862-11afbb3fc3fd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019770"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein4p3p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhgm3p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD160" metaid="_5ca3fed7-9650-46a3-b5f9-3d2379ccfba2" name="Phosphatidylserine_decarboxylase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 4.1.1.65</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ca3fed7-9650-46a3-b5f9-3d2379ccfba2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ps160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD60" metaid="_2f4d3818-add9-4c52-bc66-934853d16392" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C6_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2f4d3818-add9-4c52-bc66-934853d16392"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hhexACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thex2eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_QULNS" metaid="_89adc41d-91eb-4b1f-9627-6c8c241e29f7" name="quinolinate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000540</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.72</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_89adc41d-91eb-4b1f-9627-6c8c241e29f7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.72"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iasp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_quln_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NADH16pp" metaid="_981fc70e-7cb2-49e3-a7b4-5f8349994de4" name="NADH_dehydrogenase__ubiquinone_8___3_protons___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025600 AND XFCFBP8418_025610 AND XFCFBP8418_025620 AND XFCFBP8418_025630 AND XFCFBP8418_025640 AND XFCFBP8418_025650 AND XFCFBP8418_025660 AND XFCFBP8418_025670 AND XFCFBP8418_025680 AND XFCFBP8418_025690 AND XFCFBP8418_025700 AND XFCFBP8418_025720 AND XFCFBP8418_025730</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 1.6.5.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_981fc70e-7cb2-49e3-a7b4-5f8349994de4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.6.5.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025700"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025600"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025650"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025660"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025610"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025620"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025730"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025640"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="4"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="3"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BHEXAMD" metaid="_1b6f2247-9e71-47cc-b8ad-f4b0ece10040" name="Beta_hexosaminidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_001510 ) OR ( XFCFBP8418_021350 )</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.2.1.52</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1b6f2247-9e71-47cc-b8ad-f4b0ece10040"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.52"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021350"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chtbs_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acgam_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MCITL2" metaid="_9ea3f7d5-e2ae-4c22-bad9-07e33c547b13" name="methylisocitrate_lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022790</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 4.1.3.30</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9ea3f7d5-e2ae-4c22-bad9-07e33c547b13"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.3.30"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022790"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_micit_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PEtex" metaid="_2a13a352-80f4-40cc-8e34-d8de3874af53" name="glycero_3_phosphoethanolamine_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2a13a352-80f4-40cc-8e34-d8de3874af53"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g3pe_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3pe_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPK" metaid="_0f92d4f9-8ea4-4a3d-a6b8-2dbc86ec5f98" name="aspartate_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020380</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 2.7.2.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0f92d4f9-8ea4-4a3d-a6b8-2dbc86ec5f98"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.2.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020380"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4pasp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD161" metaid="c09709b6-e435-448f-8a39-24621fed6636" name="Phosphatidylserine_decarboxylase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 4.1.1.65</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c09709b6-e435-448f-8a39-24621fed6636"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ps161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AKGt2rtex" metaid="adebd6ac-199d-4bb3-806c-78c44400a694" name="R_AKGt2rtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#adebd6ac-199d-4bb3-806c-78c44400a694"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_akg_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_akg_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDEP4pp" metaid="_432105e1-fc64-4ad2-accf-a32b00339618" name="murein_D_D_endopeptidase__murein4px4px4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_432105e1-fc64-4ad2-accf-a32b00339618"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_murein4px4px4p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4px4p4p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G1PTT" metaid="_82e3a877-0072-405f-96d7-b5b8aee32c62" name="glucose_1_phosphate_thymidylyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026240</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.24</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_82e3a877-0072-405f-96d7-b5b8aee32c62"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.24"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dttp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dtdpglu_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP120abcpp" metaid="_95955cb8-0c3d-4efc-b5d3-d271056c82c2" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C12_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_95955cb8-0c3d-4efc-b5d3-d271056c82c2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp120_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp120_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPS" metaid="bf5b3eb0-b23b-46c6-93dd-4e37adc2cbb2" name="phosphoenolpyruvate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022440</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 2.7.9.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bf5b3eb0-b23b-46c6-93dd-4e37adc2cbb2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.9.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022440"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_2MAHMP" metaid="_0d3bc6e1-faff-4cdc-98ef-b3db11a2d1fe" name="2_Methyl_4_amino_5_hydroxymethylpyrimidine_diphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003250</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0d3bc6e1-faff-4cdc-98ef-b3db11a2d1fe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2mahmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4ampm_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SULtex" metaid="d9cb977b-1ed7-46f2-880c-4b9e492145be" name="R_SULtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d9cb977b-1ed7-46f2-880c-4b9e492145be"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_so4_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_so4_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPM" metaid="_3d261807-574e-441f-8141-b58af7afcbd4" name="R_PPM" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026200</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 5.4.2.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d261807-574e-441f-8141-b58af7afcbd4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.2.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026200"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_r1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ORNtpp" metaid="_97b03bc1-d9f6-42f5-9213-cbc5a80501c9" name="R_ORNtpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007710</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_97b03bc1-d9f6-42f5-9213-cbc5a80501c9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_orn_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_orn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLCptspp" metaid="a5036fe0-e602-4b03-8a02-61ed7ee43202" name="R_GLCptspp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a5036fe0-e602-4b03-8a02-61ed7ee43202"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glc_D_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_URA_e" metaid="fd91adc6-3242-4c4f-873b-895cc743cf86" name="R_EX_URA_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fd91adc6-3242-4c4f-873b-895cc743cf86"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_ura_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_USHDXF" metaid="e9865075-87c4-4211-acd9-1e784b54ed83" name="R_USHDXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012350</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.1.2.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e9865075-87c4-4211-acd9-1e784b54ed83"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012350"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_u23ga_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_lipidX_XF_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASR" metaid="_6bb0e45a-0673-4f17-8b22-2d9261e8b641" name="R_ASR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_015110</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6bb0e45a-0673-4f17-8b22-2d9261e8b641"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015110"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_aso4_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gthox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_aso3_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPBNGS" metaid="_202ef9f6-693d-4498-add8-ed21231eea8b" name="porphobilinogen_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019180</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.24</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_202ef9f6-693d-4498-add8-ed21231eea8b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.24"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5aop_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppbng_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM3PApp" metaid="_25b1fdbc-6f3b-48a0-8511-cb128926cb1d" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tripeptide_amidase__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011590</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: 3.5.1.28</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_25b1fdbc-6f3b-48a0-8511-cb128926cb1d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.28"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhgm3p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdap_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYC3Pabc" metaid="_28e0eb51-089b-40cc-b17e-e2a1f37062ae" name="R_GLYC3Pabc" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_28e0eb51-089b-40cc-b17e-e2a1f37062ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACOAR" metaid="a31cc524-015e-4a3a-81b5-41ae0b05130c" name="acetoacetyl_CoA_reductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025580</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.1.1.36</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a31cc524-015e-4a3a-81b5-41ae0b05130c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.36"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025580"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_aacoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_r3hbcoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAAD" metaid="_49d1cf96-0b01-4869-91d6-edc4d3d3de31" name="D_Amino_acid_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010710</p> + <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> + <p>EC_NUMBER: 1.4.99.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49d1cf96-0b01-4869-91d6-edc4d3d3de31"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.4.99.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARD" metaid="d312bee4-2cbd-42d8-9bae-17ee32fee20c" name="R_ARD" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020240</p> + <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> + <p>EC_NUMBER: 1.13.11.53</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d312bee4-2cbd-42d8-9bae-17ee32fee20c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.13.11.53"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhmtp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_mtpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA180abcpp" metaid="_5091b6e2-ef92-4479-8b11-9e1d4b778674" name="phosphatidate_transport_via_ABC_system__n_C18_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5091b6e2-ef92-4479-8b11-9e1d4b778674"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa180_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD80" metaid="_77926968-2528-4de7-9b9f-0f7c44626c73" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C8_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_77926968-2528-4de7-9b9f-0f7c44626c73"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hoctACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_toct2eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP120pp" metaid="_6a689f43-ecf3-4264-b0e7-b714b4d7c095" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6a689f43-ecf3-4264-b0e7-b714b4d7c095"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp120_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg120_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYCtpp" metaid="f2bf7fbc-77d4-4531-aea8-6f578ae146df" name="glycerol_transport_via_channel__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020710</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f2bf7fbc-77d4-4531-aea8-6f578ae146df"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLNTRS" metaid="_49002df7-93bb-449e-b598-c830b9a5a437" name="Glutaminyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004140</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49002df7-93bb-449e-b598-c830b9a5a437"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004140"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnagln_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glntrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDP4KPS" metaid="a8dc7f00-c76a-4ac1-bc13-be9336ed82eb" name="UDP_4_keto_pentose_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020820</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.1.1.35</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a8dc7f00-c76a-4ac1-bc13-be9336ed82eb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.35"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpglcur_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp4kp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASNN" metaid="_4fbdee0a-5742-4787-a3e1-55709a4b4a7a" name="L_asparaginase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024050</p> + <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> + <p>EC_NUMBER: 3.5.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4fbdee0a-5742-4787-a3e1-55709a4b4a7a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_asn_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR40" metaid="_117d8d3d-f0b7-4778-91dd-c9a830f0490b" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C4_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_117d8d3d-f0b7-4778-91dd-c9a830f0490b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_actACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3haACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACOCMT" metaid="_66369825-8159-41b0-aef5-5421b139c375" name="R_ACOCMT" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025290</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: 2.1.3.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_66369825-8159-41b0-aef5-5421b139c375"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.3.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025290"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acorn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cbp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_accitr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOAT2XF" metaid="f302aa33-53e3-478f-adb3-5467cf4fb26a" name="R_MOAT2XF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015030</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.4.99.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f302aa33-53e3-478f-adb3-5467cf4fb26a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.99.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ckdo_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdolipid4_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo2lipid4_XF_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPA" metaid="_5a29b271-98c0-4cfd-910c-c667f06ba935" name="inorganic_diphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_010630 ) OR ( XFCFBP8418_012360 ) OR ( XFCFBP8418_019680 )</p> + <p>SUBSYSTEM: Anaplerotic_Reactions</p> + <p>EC_NUMBER: 3.6.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5a29b271-98c0-4cfd-910c-c667f06ba935"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012360"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD140" metaid="_01dad332-1a3c-4153-8df5-b37ea27b2473" name="Phosphatidylserine_decarboxylase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 4.1.1.65</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01dad332-1a3c-4153-8df5-b37ea27b2473"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ps140_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TRPS3r" metaid="_60f46c0e-3148-4c43-8d24-e134cba85758" name="R_TRPS3r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003820 AND XFCFBP8418_003830</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_60f46c0e-3148-4c43-8d24-e134cba85758"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003830"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003820"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3ig3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_indole_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IPPS" metaid="_08649866-a11a-42f5-9c63-bc67e65b4fce" name="2_isopropylmalate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017930</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 2.3.3.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_08649866-a11a-42f5-9c63-bc67e65b4fce"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.3.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3mob_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3c3hmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLNS" metaid="bccbebed-11f0-42cd-a1d9-24cdac9ca01d" name="glutamine_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017710</p> + <p>SUBSYSTEM: Glutamate_Metabolism_</p> + <p>EC_NUMBER: 6.3.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bccbebed-11f0-42cd-a1d9-24cdac9ca01d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHTNA2" metaid="a33b4b51-cc6e-451d-8e71-4a5283381588" name="R_CHTNA2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010730</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.2.1.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a33b4b51-cc6e-451d-8e71-4a5283381588"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010730"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chitin_polymer_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_e" stoichiometry="49"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_chtbs_e" stoichiometry="50"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD141" metaid="_4e296aea-508c-400f-8105-5b544b9797ba" name="Phosphatidylserine_decarboxylase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 4.1.1.65</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4e296aea-508c-400f-8105-5b544b9797ba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ps141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LYSabcpp" metaid="_051d2f7e-278f-4b19-81f8-746cc4f031ae" name="L_lysine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.21</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_051d2f7e-278f-4b19-81f8-746cc4f031ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.21"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lys_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_DAD_5" metaid="_49f56dfb-077f-4510-8638-b0fce0a1f7e3" name="R_DM_DAD_5" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49f56dfb-077f-4510-8638-b0fce0a1f7e3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dad_5_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_FOR" metaid="_2c90897c-1dc2-4313-847b-b063fec53fee" name="R_DM_FOR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2c90897c-1dc2-4313-847b-b063fec53fee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_for_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KARA1" metaid="b0cfc4f4-6093-446d-9500-4a3e2fc3316b" name="ketol_acid_reductoisomerase__2_3_dihydroxy_3_methylbutanoate_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017890</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.86</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b0cfc4f4-6093-446d-9500-4a3e2fc3316b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.86"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_23dhmb_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_alac_S_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_4PCPpp" metaid="_7c20c035-8866-4746-b496-301120428604" name="R_4PCPpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: 3.4.17.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7c20c035-8866-4746-b496-301120428604"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdapDala_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_LalaDgluMdap_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NAabcO" metaid="_90b16213-e7d2-411d-b1ed-0013b8613160" name="R_NAabcO" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021120 AND XFCFBP8418_021130</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_90b16213-e7d2-411d-b1ed-0013b8613160"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021130"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_na1_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_na1_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_2KMBT" metaid="f1a1c730-db43-4466-a772-458b812137cd" name="R_2KMBT" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005040</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f1a1c730-db43-4466-a772-458b812137cd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005040"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2kmb_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2ogm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPTA" metaid="e95b15cd-248a-4abb-a36f-35144913809a" name="aspartate_aminotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014480</p> + <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> + <p>EC_NUMBER: 2.6.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e95b15cd-248a-4abb-a36f-35144913809a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PAPSR" metaid="_94d10b09-024a-445a-8d66-a125d9fb50c2" name="R_PAPSR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_002720 ) OR ( XFCFBP8418_002720 AND XFCFBP8418_013260 )</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 1.8.4.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_94d10b09-024a-445a-8d66-a125d9fb50c2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.4.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002720"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_paps_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pap_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_so3_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MI1PP" metaid="_0d316631-0afb-4f33-b35e-c64235d6181e" name="myo_inositol_1_phosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005240</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.3.25</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0d316631-0afb-4f33-b35e-c64235d6181e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mi1p_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_inost_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRtex" metaid="_539d49b0-6c42-4f0d-a4db-99cd9e9170ec" name="L_threonine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_539d49b0-6c42-4f0d-a4db-99cd9e9170ec"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thr_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_thr_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTPDPK" metaid="ad8b408e-94ae-44ef-9198-2abaf8be91de" name="GTP_diphosphokinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004340</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.6.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ad8b408e-94ae-44ef-9198-2abaf8be91de"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.6.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdptp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IPDPS" metaid="ec6cff5d-8296-47ac-8a91-e527cab00288" name="1_hydroxy_2_methyl_2__E__butenyl_4_diphosphate_reductase__ipdp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004660</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.17.7.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ec6cff5d-8296-47ac-8a91-e527cab00288"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.7.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004660"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2mb4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ipdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THZPSN3" metaid="_79d778ee-f268-475b-904d-75de8270c000" name="R_THZPSN3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011380</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.8.1.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_79d778ee-f268-475b-904d-75de8270c000"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.8.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011380"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhgly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iscssh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_iscs_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4mpetz_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGDC" metaid="fa70a149-fa80-4865-a57a-8ec9bf0cab35" name="arginine_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015380</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 4.1.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fa70a149-fa80-4865-a57a-8ec9bf0cab35"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015380"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_agm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CPH4S" metaid="a3fa9d7a-5460-4c20-ad12-9d3ba1c2f250" name="6_carboxy_5_6_7_8_tetrahydropterin_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015860</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.2.50</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a3fa9d7a-5460-4c20-ad12-9d3ba1c2f250"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.50"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015860"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ahdt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acald_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cph4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FGLU" metaid="_81c035f4-7607-4bb9-b2c0-a35fed0105e0" name="formimidoylglutamase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 3.5.3.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_81c035f4-7607-4bb9-b2c0-a35fed0105e0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.3.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_forglu_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_frmd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYTRS" metaid="_7606a995-7800-4ec6-abe8-9acad743b6ef" name="Glycyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000870 AND XFCFBP8418_000880</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7606a995-7800-4ec6-abe8-9acad743b6ef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000880"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000870"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnagly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glytrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FEENTERtonex" metaid="_12a36d85-5cbd-4a3e-b15f-500bd8fa2600" name="R_FEENTERtonex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_014300 ) OR ( No_Assignment AND XFCFBP8418_014310 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_12a36d85-5cbd-4a3e-b15f-500bd8fa2600"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014300"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014310"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_feenter_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_feenter_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MALS" metaid="_91b2e54f-265a-45e4-a8de-d215e3c74426" name="malate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Anaplerotic_Reactions</p> + <p>EC_NUMBER: 2.3.3.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_91b2e54f-265a-45e4-a8de-d215e3c74426"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.3.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glx_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mal_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_14GLUCANabcpp" metaid="c89c8704-8b34-431c-a0b6-f45ed6f5893b" name="R_14GLUCANabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND No_Assignment2 AND XFCFBP8418_004950 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c89c8704-8b34-431c-a0b6-f45ed6f5893b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment2"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004950"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_14aglucan_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_14aglucan_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FRUtex" metaid="d305996b-e7c1-40e5-bfa7-0ae4b7bf8e4a" name="D_fructose_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d305996b-e7c1-40e5-bfa7-0ae4b7bf8e4a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fru_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fru_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BTS5" metaid="d6e0e695-c2ba-4aa1-b31c-6a06dfa60da2" name="Biotin_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014650</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.8.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d6e0e695-c2ba-4aa1-b31c-6a06dfa60da2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.8.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dtbt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2fe2s_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dad_5_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_btn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2fe1s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDCPDPpp" metaid="edf59a77-9d26-46f1-ab8e-1da894ac3f51" name="undecaprenyl_diphosphatase__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017720</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.6.1.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#edf59a77-9d26-46f1-ab8e-1da894ac3f51"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017720"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udcpdp_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_udcpp_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MTRI" metaid="_6fb97570-f876-42d0-87aa-3dd19fb12fc0" name="R_MTRI" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012050</p> + <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> + <p>EC_NUMBER: 5.3.1.23</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6fb97570-f876-42d0-87aa-3dd19fb12fc0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5mdr1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5mdru1p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Niabcpp" metaid="_6d7bcd38-06ed-4a02-83d8-9a04a3cdf12b" name="R_Niabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: 3.6.3.24</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6d7bcd38-06ed-4a02-83d8-9a04a3cdf12b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.24"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ni2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ni2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDEP1pp" metaid="_2ee3178f-cd5c-46ed-957e-64b4d013309c" name="murein_L_D_endopeptidase__murein3px3p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2ee3178f-cd5c-46ed-957e-64b4d013309c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein3px3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein3p3p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THDPS" metaid="_4c9752db-6ac6-41d6-ac69-c036ee50633f" name="tetrahydrodipicolinate_succinylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015100</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 2.3.1.117</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4c9752db-6ac6-41d6-ac69-c036ee50633f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.117"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_succoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_sl2a6o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR60" metaid="_161e1c42-26df-4803-9482-c44d8809627b" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C6_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_161e1c42-26df-4803-9482-c44d8809627b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ohexACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hhexACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KARA2" metaid="_7137640b-08fb-4d48-a493-848e538f96e4" name="ketol_acid_reductoisomerase__2_Acetolactate_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017890</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.86</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7137640b-08fb-4d48-a493-848e538f96e4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.86"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2ahbut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_23dhmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL60t2pp" metaid="_8114a03e-0693-4d24-b01b-0073a5bdf075" name="fatty_acid_CoA_ligase__hexanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8114a03e-0693-4d24-b01b-0073a5bdf075"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hxa_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hxcoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_14GLUCANtex" metaid="_6fad67d1-09ba-4d18-95e0-5bf1cc1498b7" name="R_14GLUCANtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6fad67d1-09ba-4d18-95e0-5bf1cc1498b7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_14aglucan_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_14aglucan_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD120" metaid="_76125732-dfb4-4bed-a454-8c2ed827159b" name="Phosphatidylserine_decarboxylase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 4.1.1.65</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_76125732-dfb4-4bed-a454-8c2ed827159b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ps120_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe120_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CD2t3pp" metaid="_6a6be6f5-942a-4c62-acf5-19dfca4f0912" name="cadmium__Cd_2__transport_out_via_proton_antiport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010570</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6a6be6f5-942a-4c62-acf5-19dfca4f0912"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cd2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cd2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TRPTRS" metaid="_40319eaf-9e30-43a6-8522-e4712915748d" name="Tryptophanyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007540</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_40319eaf-9e30-43a6-8522-e4712915748d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnatrp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trp_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trptrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INSTtex" metaid="cdc4a2be-7fbd-47c8-bbc2-eee17a32869f" name="inositol_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cdc4a2be-7fbd-47c8-bbc2-eee17a32869f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_inost_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_inost_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPT" metaid="ac1bd227-b716-4bab-8df7-0a75519b747f" name="R_ASPT" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002100</p> + <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> + <p>EC_NUMBER: 4.3.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ac1bd227-b716-4bab-8df7-0a75519b747f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SERTRS" metaid="f804cee3-3765-4d25-9e4a-ea4f4f6cadb3" name="Seryl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020870</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f804cee3-3765-4d25-9e4a-ea4f4f6cadb3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaser_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sertrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGCDr" metaid="e85307f9-e4f6-4d24-9b95-facdb10b26c3" name="phosphoglycerate_dehydrogenase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020190</p> + <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.95</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e85307f9-e4f6-4d24-9b95-facdb10b26c3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.95"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020190"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3pg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3php_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NOVBCNtpp" metaid="_5ca19ded-359b-4743-946b-f3d0123a11cc" name="Novobiocin_transport_via_TolC_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ca19ded-359b-4743-946b-f3d0123a11cc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_novbcn_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_novbcn_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROTRS" metaid="_38f0455e-f7aa-40da-b02b-4a5a0eef5801" name="Prolyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007370</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_38f0455e-f7aa-40da-b02b-4a5a0eef5801"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007370"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnapro_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_protrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DUTPDP" metaid="_33f29952-a3e2-4221-b99e-dd06006a5693" name="dUTP_diphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015440</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.23</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_33f29952-a3e2-4221-b99e-dd06006a5693"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015440"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dutp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dump_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDRPDr" metaid="_3db595ad-5b6f-402f-b8aa-1e235cb8fd82" name="R_MDRPDr" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020230</p> + <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> + <p>EC_NUMBER: 4.2.1.109</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3db595ad-5b6f-402f-b8aa-1e235cb8fd82"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.109"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020230"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5mdru1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dkmpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD40" metaid="_37eaf0db-57f8-422f-922e-522d13770c11" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C4_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_37eaf0db-57f8-422f-922e-522d13770c11"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3haACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_but2eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADSK" metaid="_85d5b406-f57f-4a73-a44b-6d017b59b2cf" name="adenylyl_sulfate_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002680</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 2.7.1.25</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_85d5b406-f57f-4a73-a44b-6d017b59b2cf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_aps_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_paps_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS120pp" metaid="ffa558f1-d74d-4319-8b63-06f62ee79683" name="cardiolipin_synthase__periplasmic__n_C12_0_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ffa558f1-d74d-4319-8b63-06f62ee79683"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pg120_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_clpn120_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MCTP2App" metaid="dd16bec1-cf8a-4c14-bab2-2885cf18c2f2" name="murein_crosslinking_transpeptidase_1A__A2pm__D_ala___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004370 ) OR ( XFCFBP8418_008630 ) OR ( XFCFBP8418_010420 ) OR ( XFCFBP8418_011310 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dd16bec1-cf8a-4c14-bab2-2885cf18c2f2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004370"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011310"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5p5p5p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="2"/> + <speciesReference constant="true" species="M_murein5px4px4p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NOtex" metaid="_126d4486-6fa6-4692-86ce-1a5e2e9b50cb" name="nitric_oxide_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_126d4486-6fa6-4692-86ce-1a5e2e9b50cb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_no_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_no_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Mntex" metaid="_9278d2b5-4c10-4130-b169-9dbfd6a40161" name="R_Mntex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9278d2b5-4c10-4130-b169-9dbfd6a40161"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mn2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mn2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADSS" metaid="df3e285e-9030-481d-8b06-a7ffb62ea79f" name="adenylosuccinate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007280</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 6.3.4.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#df3e285e-9030-481d-8b06-a7ffb62ea79f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007280"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dcamp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPt2_2pp" metaid="_0cc2f9de-5d1d-4e44-ad6b-89dda6af0c75" name="R_ASPt2_2pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025480</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0cc2f9de-5d1d-4e44-ad6b-89dda6af0c75"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> + <speciesReference constant="true" species="M_asp_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALATA_L" metaid="f85ea233-7154-4528-9ab6-5937dd7ca44a" name="L_alanine_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004540</p> + <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> + <p>EC_NUMBER: 2.6.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f85ea233-7154-4528-9ab6-5937dd7ca44a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DADK" metaid="_235f4e1e-11ac-4a32-a0a9-c87385ecabab" name="deoxyadenylate_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026070</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_235f4e1e-11ac-4a32-a0a9-c87385ecabab"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_damp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dadp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SOTA" metaid="b07c5ae3-e117-4a7c-814f-c83d7c3e8d21" name="R_SOTA" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003360</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 2.6.1.81</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b07c5ae3-e117-4a7c-814f-c83d7c3e8d21"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.81"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_sucorn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sucgsa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOHMT" metaid="_30aa2606-8808-4ee6-b4d3-e1953050bd8d" name="3_methyl_2_oxobutanoate_hydroxymethyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026560</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.1.2.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_30aa2606-8808-4ee6-b4d3-e1953050bd8d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026560"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3mob_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2dhp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ABUTtex" metaid="_19670ffc-772f-4621-82ba-26b98dad7052" name="4_aminobutyrate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_19670ffc-772f-4621-82ba-26b98dad7052"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4abut_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4abut_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGDC_r" metaid="eec6cf3f-516d-4536-ad2a-73e98b8c0ef7" name="R_AGDC_r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003030</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.5.1.25</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eec6cf3f-516d-4536-ad2a-73e98b8c0ef7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acgam6p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gam6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DDCAtex" metaid="a4794958-bba0-4dc7-a430-957e7a1309f8" name="Fatty_acid__dodecanoate__transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a4794958-bba0-4dc7-a430-957e7a1309f8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ddca_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ddca_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAGAATXF" metaid="_92feb24f-ded7-468f-8410-4bc2fc8122be" name="R_UAGAATXF" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024900</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.129</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_92feb24f-ded7-468f-8410-4bc2fc8122be"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.129"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uacgam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hdecACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_u3aga_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYALDtex" metaid="baa6d16a-533f-48ab-bb79-4bf53824fedf" name="R_GLYALDtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#baa6d16a-533f-48ab-bb79-4bf53824fedf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyald_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyald_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTP10" metaid="_251cd69f-59b0-4bbf-b9f8-66c81ff22528" name="R_NTP10" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006890</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_251cd69f-59b0-4bbf-b9f8-66c81ff22528"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_itp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_idp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RPI" metaid="_84ca884c-785c-4589-85e2-e29eef61eec5" name="ribose_5_phosphate_isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001410</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 5.3.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_84ca884c-785c-4589-85e2-e29eef61eec5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001410"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ru5p_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PCabcpp" metaid="d99d80ac-fea2-4614-8aaa-d22c5dd79db6" name="sn_glycerol_3_phosphocholine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d99d80ac-fea2-4614-8aaa-d22c5dd79db6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3pc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3pc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DSBDR" metaid="_442b5b18-fb55-4449-85d6-4a8667c22950" name="DsbD_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_006350 ) OR ( XFCFBP8418_006350 AND XFCFBP8418_013260 )</p> + <p>SUBSYSTEM: Electron_transfer</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_442b5b18-fb55-4449-85d6-4a8667c22950"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006350"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006350"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbdox_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbdrd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_VALabcpp" metaid="_4d8072c0-c917-4e4e-a984-3634d31f3449" name="L_valine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4d8072c0-c917-4e4e-a984-3634d31f3449"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_val_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_val_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RPE" metaid="ff31b7d8-2c37-4322-b512-edbde18d8a5e" name="ribulose_5_phosphate_3_epimerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026760</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 5.1.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ff31b7d8-2c37-4322-b512-edbde18d8a5e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026760"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ru5p_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_xu5p_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ANS" metaid="_32366fd1-5082-48d5-9646-3b28a7410c5b" name="anthranilate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000460 AND XFCFBP8418_026730</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_32366fd1-5082-48d5-9646-3b28a7410c5b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000460"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026730"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_chor_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_anth_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RBP4E" metaid="_5779744d-e37e-46e1-9e95-8626d440d7cd" name="R_RBP4E" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5779744d-e37e-46e1-9e95-8626d440d7cd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ru5p_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_xu5p_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASNS1" metaid="_7696c780-6ae3-4c99-bea7-10c42051dcf3" name="asparagine_synthase__glutamine_hydrolysing_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015130</p> + <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> + <p>EC_NUMBER: 6.3.5.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7696c780-6ae3-4c99-bea7-10c42051dcf3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.5.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_asn_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METAT" metaid="_1a1c7d09-cd76-4de7-9a5d-34f2985e9750" name="methionine_adenosyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007840</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 2.5.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1a1c7d09-cd76-4de7-9a5d-34f2985e9750"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR80" metaid="_678394b3-e582-47f4-8c48-c9f82945157a" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C8_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_678394b3-e582-47f4-8c48-c9f82945157a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ooctACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hoctACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOATXF" metaid="_799bdd79-bad4-4a86-bf82-e735bb863477" name="R_MOATXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015030</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.4.99.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_799bdd79-bad4-4a86-bf82-e735bb863477"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.99.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ckdo_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lipidA_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdolipid4_XF_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PCtex" metaid="_0ca2baad-8ff8-4b02-ba9a-e729b34adff4" name="glycero_3_phosphocholine_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0ca2baad-8ff8-4b02-ba9a-e729b34adff4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g3pc_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3pc_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MINCYCtpp" metaid="_727f254d-6d71-41dc-bc05-174f23061000" name="Minocycline_transport_via_TolC_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_727f254d-6d71-41dc-bc05-174f23061000"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mincyc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mincyc_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IPMDr" metaid="b277d274-82b8-4a71-93f9-cdcfa5c407cf" name="3_isopropylmalate_dehydrogenase_reversible" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021500</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.85</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b277d274-82b8-4a71-93f9-cdcfa5c407cf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.85"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021500"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3c2hmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3c4mop_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SBPA" metaid="_48b9cc5a-09a5-43de-b499-b30b85b199b8" name="R_SBPA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011030</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_48b9cc5a-09a5-43de-b499-b30b85b199b8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_s17bp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_e4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FBP" metaid="_95eaacc1-00ea-4f90-8f6f-8f850fed1a29" name="fructose_bisphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_95eaacc1-00ea-4f90-8f6f-8f850fed1a29"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AOXSr2" metaid="_9400c890-2a59-4627-8ad7-0b5bd92d25c9" name="8_amino_7_oxononanoate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004000</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.47</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9400c890-2a59-4627-8ad7-0b5bd92d25c9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.47"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004000"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pimACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_8aonn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ORNtex" metaid="_30d623cd-3157-42a3-857b-b4161c1f0c44" name="ornithine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007710</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_30d623cd-3157-42a3-857b-b4161c1f0c44"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_orn_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_orn_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PIuabcpp" metaid="_7758ea08-9ec7-40bd-80df-08c4841b230d" name="phosphate_transport_via_ABC_system__uptake__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019420 AND XFCFBP8418_019430 AND XFCFBP8418_019440 AND XFCFBP8418_019450</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7758ea08-9ec7-40bd-80df-08c4841b230d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019430"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019440"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019450"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HSTPTr" metaid="_9e184f17-f727-4bc1-b67b-703973f1bb91" name="histidinol_phosphate_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020310</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9e184f17-f727-4bc1-b67b-703973f1bb91"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020310"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_imacp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hisp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SERTRS2" metaid="d1db8a88-2e24-4a99-bfa5-e80896799f4d" name="Seryl_tRNA_synthetase__selenocystein_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020870</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d1db8a88-2e24-4a99-bfa5-e80896799f4d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnasecys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sertrna_sec_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_O2tex" metaid="c3700227-200a-4301-b3ac-fe1269c357f5" name="oxygen_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c3700227-200a-4301-b3ac-fe1269c357f5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_o2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_o2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUTRS" metaid="b8637038-f275-43b8-aa77-1e32c48fd80a" name="Glutamyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011070</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b8637038-f275-43b8-aa77-1e32c48fd80a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaglu_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glutrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUTRR" metaid="_6633a907-f3e1-4193-98fb-693bd2edb998" name="glutamyl_tRNA_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012920</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 1.2.1.70</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6633a907-f3e1-4193-98fb-693bd2edb998"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.70"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012920"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glutrna_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu1sa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaglu_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FADRx2" metaid="_1a31ffcd-1cd7-4991-ac9c-75f24efdafd8" name="R_FADRx2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002700 AND XFCFBP8418_002710</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.5.1.30</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1a31ffcd-1cd7-4991-ac9c-75f24efdafd8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.30"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002710"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002700"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AKGt2rpp" metaid="_56babd7d-178d-4e30-bbe7-37be8f99c75c" name="2_oxoglutarate_reversible_transport_via_symport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014890</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_56babd7d-178d-4e30-bbe7-37be8f99c75c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_akg_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDCP4pp" metaid="_4f680622-675b-4d0b-befc-1ac754cc150a" name="murein_D_D_carboxypeptidase__murein5p4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_018620 ) OR ( XFCFBP8418_020420 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.16.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4f680622-675b-4d0b-befc-1ac754cc150a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.16.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5p4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4p4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_GCALD" metaid="c82549a2-429a-4622-b277-a2d927e5780d" name="R_DM_GCALD" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c82549a2-429a-4622-b277-a2d927e5780d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gcald_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OCDCEAtexi" metaid="_308a73d2-096d-4b14-be3e-96175ac517ba" name="R_OCDCEAtexi" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_308a73d2-096d-4b14-be3e-96175ac517ba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ocdcea_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ocdcea_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CMtpp" metaid="a13b6201-035d-4799-b18e-bf3f1fa52249" name="Chloramphenicol_transport_via_TolC_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a13b6201-035d-4799-b18e-bf3f1fa52249"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_cm_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cm_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PMEACPE" metaid="_68a9ebb6-f1c6-44c4-a5c8-7dcee09ae7ba" name="Pimeloyl__ACP__methyl_ester_esterase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004010</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.1.1.85</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_68a9ebb6-f1c6-44c4-a5c8-7dcee09ae7ba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.1.85"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004010"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_meoh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pimACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADK1" metaid="_49cdf00d-bed3-479b-b154-c0f5fb59388e" name="adenylate_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026070</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49cdf00d-bed3-479b-b154-c0f5fb59388e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP140pp" metaid="_7a8ec943-7c19-4990-a3f3-03e43ff54b22" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7a8ec943-7c19-4990-a3f3-03e43ff54b22"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp140_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg140_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GRTT" metaid="_9978b685-ed01-4b71-bb18-16a6d0e1db8b" name="geranyltranstransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005980</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9978b685-ed01-4b71-bb18-16a6d0e1db8b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005980"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ipdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_frdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUCtex" metaid="_6083e642-12b7-4961-a2ab-988dc5346324" name="R_FUCtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6083e642-12b7-4961-a2ab-988dc5346324"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fuc_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fuc_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM3PH" metaid="_5bcf5dcc-ce35-4973-8e5d-a3acbefbccb7" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tripeptide_beta__1_4_N_acetylglucosaminidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021350</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5bcf5dcc-ce35-4973-8e5d-a3acbefbccb7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021350"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhgm3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhm3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acgam_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYOX" metaid="baa53e94-4e56-4a8a-800d-80dc093d5834" name="hydroxyacylglutathione_hydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019610</p> + <p>SUBSYSTEM: Methylglyoxal_degradation</p> + <p>EC_NUMBER: 3.1.2.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#baa53e94-4e56-4a8a-800d-80dc093d5834"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019610"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lgt_S_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lac_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FBA" metaid="d57285eb-dacd-4631-8872-dbaec147930d" name="fructose_bisphosphate_aldolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011030</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 4.1.2.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d57285eb-dacd-4631-8872-dbaec147930d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DOXRBCNtpp" metaid="b12b499f-3972-4815-a88a-a9317ef5d311" name="Doxorubicin_transport_via_TolC_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b12b499f-3972-4815-a88a-a9317ef5d311"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_doxrbcn_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_doxrbcn_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AP4AS" metaid="e2a33de6-8ba2-4520-9b91-68d823beb82f" name="R_AP4AS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023900</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e2a33de6-8ba2-4520-9b91-68d823beb82f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ap4a_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADK3" metaid="_3c33c4b5-38c9-4e55-a928-726c79ddb1d2" name="adentylate_kinase__GTP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026070</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3c33c4b5-38c9-4e55-a928-726c79ddb1d2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACOATA" metaid="d134947b-2d61-43dc-ad87-3586854783f4" name="Acetyl_CoA_ACP_transacylase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_017940</p> + <p>SUBSYSTEM: Membrane_Lipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.38</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d134947b-2d61-43dc-ad87-3586854783f4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.38"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017940"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADK4" metaid="d80fc4ec-a1a3-48fc-b5d9-663765d5ee43" name="adentylate_kinase__ITP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026070</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d80fc4ec-a1a3-48fc-b5d9-663765d5ee43"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_itp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_idp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_APRAUR" metaid="_70c48d46-da92-46e2-baa8-b8192e76e959" name="5_amino_6__5_phosphoribosylamino_uracil_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009790</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.193</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_70c48d46-da92-46e2-baa8-b8192e76e959"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.193"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009790"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_5apru_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_5aprbu_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S2FE2ST" metaid="d88fa6b4-43b9-414c-84e2-b3f14db7a4c3" name="R_S2FE2ST" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950 AND XFCFBP8418_012150</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d88fa6b4-43b9-414c-84e2-b3f14db7a4c3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012150"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="4"/> + <speciesReference constant="true" species="M_sufbcd_2fe2s_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2fe2s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufbcd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LPADSSXF" metaid="c6e32931-814b-41c7-a454-7f0a8ecffa84" name="R_LPADSSXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.4.1.182</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c6e32931-814b-41c7-a454-7f0a8ecffa84"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.1.182"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_u23ga_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lipidX_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_lipidAds_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GDPDPK" metaid="d6fbd975-bf2e-4c02-a28a-48d1ab9741ae" name="GDP_diphosphokinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004340 ) OR ( XFCFBP8418_008750 )</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.6.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d6fbd975-bf2e-4c02-a28a-48d1ab9741ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.6.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppgpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AICART" metaid="_743b940c-dc47-4773-af74-6f8f53223744" name="phosphoribosylaminoimidazolecarboxamide_formyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001030</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 2.1.2.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_743b940c-dc47-4773-af74-6f8f53223744"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_aicar_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_10fthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fprica_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S2FE2SS" metaid="df79ddf3-b54a-400f-9ed3-c4a7a1293421" name="R_S2FE2SS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950 AND XFCFBP8418_002960 AND XFCFBP8418_025330</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#df79ddf3-b54a-400f-9ed3-c4a7a1293421"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufbcd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufsesh_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_fe2_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="7"/> + <speciesReference constant="true" species="M_sufse_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_sufbcd_2fe2s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S2FE2SR" metaid="ad865030-3d0f-46b0-ae92-d51f2fe675ea" name="R_S2FE2SR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950 AND XFCFBP8418_002960 AND XFCFBP8418_025330</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ad865030-3d0f-46b0-ae92-d51f2fe675ea"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufbcd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufsesh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2fe1s_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="5"/> + <speciesReference constant="true" species="M_sufse_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufbcd_2fe2s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MECDPDH5" metaid="_3dcaee8e-0581-4fd2-a58e-36c336cea301" name="R_MECDPDH5" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012250 AND XFCFBP8418_023100</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.17.7.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3dcaee8e-0581-4fd2-a58e-36c336cea301"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.7.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012250"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023100"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2mecdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_flxr_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2mb4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_flxso_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPNDH" metaid="_4504abff-43dd-4a5c-8d7d-c99bfd5232d8" name="prephenate_dehydratase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021090</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4504abff-43dd-4a5c-8d7d-c99bfd5232d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021090"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pphn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phpyr_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_COBALT2t3pp" metaid="_413f9a7c-17cb-4b24-a54b-9139a7907c2c" name="cobalt__Co_2__transport_out_via_proton_antiport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010570</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_413f9a7c-17cb-4b24-a54b-9139a7907c2c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cobalt2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cobalt2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MPTG2" metaid="ea8026d5-3079-404e-ae94-de7266c66bb9" name="murein_polymerizing_transglycosylase_2__three_linked_units_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004700 AND XFCFBP8418_008630 ) OR ( XFCFBP8418_004700 AND XFCFBP8418_010420 ) OR ( XFCFBP8418_004700 AND XFCFBP8418_020460 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ea8026d5-3079-404e-ae94-de7266c66bb9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020460"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010420"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uaagmda_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_udcpdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_murein5p5p5p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GAPD" metaid="b831af11-11e9-46cd-a767-98d8e6ae317b" name="glyceraldehyde_3_phosphate_dehydrogenase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007260</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 1.2.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b831af11-11e9-46cd-a767-98d8e6ae317b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007260"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_13dpg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PYK" metaid="_043c5f9c-0c78-4d01-b3a3-8e821cd2855f" name="pyruvate_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011050</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 2.7.1.40</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_043c5f9c-0c78-4d01-b3a3-8e821cd2855f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.40"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_QUIN2tex" metaid="_31c3858e-2a09-490c-83ca-e7646693cc58" name="R_QUIN2tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_31c3858e-2a09-490c-83ca-e7646693cc58"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_quin_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_quin_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHTBSptspp" metaid="a7cd7347-243a-4ea4-86c6-cc55b9b7ce10" name="R_CHTBSptspp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a7cd7347-243a-4ea4-86c6-cc55b9b7ce10"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chtbs_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_chtbs6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPPGO" metaid="_3a1ca359-53dd-4137-a384-4c4aed4c2efb" name="protoporphyrinogen_oxidase__aerobic_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.3.3.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3a1ca359-53dd-4137-a384-4c4aed4c2efb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.3.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1.5"/> + <speciesReference constant="true" species="M_pppg9_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppp9_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="3"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSP_L" metaid="_486e5a3f-1611-4213-a1af-da0364cd412c" name="phosphoserine_phosphatase__L_serine_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 3.1.3.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_486e5a3f-1611-4213-a1af-da0364cd412c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG140abcpp" metaid="d569cf55-f1ce-4fac-a614-263236ad327b" name="phosphatidylglycerol_transport_via_ABC_system__n_C14_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d569cf55-f1ce-4fac-a614-263236ad327b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pg140_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BHEXAMD_p" metaid="b1754b01-de38-4b32-909c-2c8a0bf2f851" name="R_BHEXAMD_p" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b1754b01-de38-4b32-909c-2c8a0bf2f851"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chtbs_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acgam_p" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IG3PS" metaid="_8316c47c-13b2-4967-96d9-149ef52f5e2b" name="Imidazole_glycerol_3_phosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020270 AND XFCFBP8418_020290</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8316c47c-13b2-4967-96d9-149ef52f5e2b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020290"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020270"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prlp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_aicar_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_eig3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ZN2t3pp" metaid="_89074f04-5c71-4b22-87a4-e9cc5b218486" name="zinc__Zn_2__transport_out_via_proton_antiport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010570</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_89074f04-5c71-4b22-87a4-e9cc5b218486"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_zn2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_zn2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MCTP1Bpp" metaid="_43d8c899-b964-402b-8cc3-5b322c5cebdd" name="murein_crosslinking_transpeptidase_1B__A2pm__A2pm___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_008630 ) OR ( XFCFBP8418_010420 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_43d8c899-b964-402b-8cc3-5b322c5cebdd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010420"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein5px3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_alaala_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG181abcpp" metaid="ae101868-39b2-4394-b08d-b200e2aeacda" name="phosphatidylglycerol_transport_via_ABC_system__n_C18_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ae101868-39b2-4394-b08d-b200e2aeacda"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg181_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHNPTE" metaid="_9c5a9fe1-95bb-4d1c-96ca-65e1bbf685c0" name="R_DHNPTE" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007450</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 5.1.99.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9c5a9fe1-95bb-4d1c-96ca-65e1bbf685c0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.99.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007450"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhnpt_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dhmpt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HYXNtpp" metaid="_4a5f98fb-3bd4-4023-8a75-76dcf7743a8e" name="R_HYXNtpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4a5f98fb-3bd4-4023-8a75-76dcf7743a8e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hxan_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hxan_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_E4P" metaid="_16143a2a-81df-4625-8e0d-024f7c1d9265" name="R_DM_E4P" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_16143a2a-81df-4625-8e0d-024f7c1d9265"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_e4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ILEtex" metaid="_7fb97607-e83e-4f04-a22b-61d665599138" name="L_isoleucine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7fb97607-e83e-4f04-a22b-61d665599138"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ile_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ile_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYTK1" metaid="b35cfab3-f230-41ae-ba8f-262dcad25287" name="cytidylate_kinase__CMP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004870</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b35cfab3-f230-41ae-ba8f-262dcad25287"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOX2abcpp" metaid="_62738479-cf85-4018-aec9-41eed2607914" name="R_METSOX2abcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_62738479-cf85-4018-aec9-41eed2607914"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_metsox_R_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_metsox_R_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TRPS2" metaid="d4ee51b8-8b6e-4e04-a97f-5f9d65da4c9a" name="R_TRPS2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003820 AND XFCFBP8418_003830</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d4ee51b8-8b6e-4e04-a97f-5f9d65da4c9a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003830"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003820"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_indole_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trp_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DCTPD" metaid="_27d1f9b3-342a-4707-8c9e-b20105bc33ac" name="dCTP_deaminase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011560</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.5.4.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_27d1f9b3-342a-4707-8c9e-b20105bc33ac"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011560"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dutp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL140t2pp" metaid="d0a9a803-5d82-4d2a-8f86-12aad13447e7" name="fatty_acid_CoA_ligase__tetradecanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d0a9a803-5d82-4d2a-8f86-12aad13447e7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ttdca_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdcoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA181abcpp" metaid="_2882c2e6-f3ce-42a7-9e5b-a3a5b2a932ba" name="phosphatidate_transport_via_ABC_system__n_C18_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2882c2e6-f3ce-42a7-9e5b-a3a5b2a932ba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa181_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYKr" metaid="_01d621a5-aaa8-4c78-95a3-bd1c60708a0a" name="glycerol_kinase__reversible_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020720</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.30</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01d621a5-aaa8-4c78-95a3-bd1c60708a0a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.30"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020720"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP120" metaid="_5f9dd26b-c6e9-445b-8eb1-8aec7dd5ab14" name="phosphatidylglycerol_phosphate_phosphatase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f9dd26b-c6e9-445b-8eb1-8aec7dd5ab14"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp120_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pg120_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUt4pp" metaid="_719fa133-2460-4968-a297-4a346376a133" name="R_GLUt4pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000650</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_719fa133-2460-4968-a297-4a346376a133"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_na1_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_na1_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GUAtpp" metaid="b9b2cd98-3901-4d60-8afc-ebd4c46d93cd" name="R_GUAtpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b9b2cd98-3901-4d60-8afc-ebd4c46d93cd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gua_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gua_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NODOy" metaid="bea88a6d-157a-4674-a63a-db6fec619225" name="nitric_oxide_dioxygenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014590</p> + <p>SUBSYSTEM: Nitrogen_Metabolism</p> + <p>EC_NUMBER: 1.14.12.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bea88a6d-157a-4674-a63a-db6fec619225"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.14.12.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_o2_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_no_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_no3_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DTMPK" metaid="_0da9684f-202c-4ba5-b34c-5a0cf61f6192" name="dTMP_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006690</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0da9684f-202c-4ba5-b34c-5a0cf61f6192"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006690"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dtmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dtdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SUCOAS" metaid="ea388af7-db37-4569-8f66-ef10468d4987" name="succinyl_CoA_synthetase__ADP_forming_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011960 AND XFCFBP8418_011970</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 6.2.1.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ea388af7-db37-4569-8f66-ef10468d4987"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011970"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011960"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_succoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYTK2" metaid="e66be1e9-3407-4b0b-ac83-de6a60fa30fe" name="cytidylate_kinase__dCMP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004870</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e66be1e9-3407-4b0b-ac83-de6a60fa30fe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dcmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dcdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PNTK" metaid="da5808be-1ffe-4b03-837f-0c48cf839c38" name="pantothenate_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018190</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.1.33</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#da5808be-1ffe-4b03-837f-0c48cf839c38"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.33"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018190"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pnto_R_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4ppan_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PAPPT3" metaid="c1fdd5ff-6f8e-4c9e-a65a-87170bae8b65" name="phospho_N_acetylmuramoyl_pentapeptide_transferase__meso_2_6_diaminopimelate_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011280</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.7.8.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c1fdd5ff-6f8e-4c9e-a65a-87170bae8b65"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011280"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udcpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ugmda_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_uagmda_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HEPT1" metaid="_121569c1-aca4-4a43-a54e-7ab8a6ad28d1" name="R_HEPT1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019540</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_121569c1-aca4-4a43-a54e-7ab8a6ad28d1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_adphep_LD_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lipidA_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hlipidA_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR161tipp" metaid="abe99089-4242-4fb7-92aa-8e1384b39616" name="R_12DGR161tipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#abe99089-4242-4fb7-92aa-8e1384b39616"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr161_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_12dgr161_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NNAMr" metaid="_45edd948-9a91-4a3d-ae9c-7d5a9ef1047b" name="nicotinamidase__reversible" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020780</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.5.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_45edd948-9a91-4a3d-ae9c-7d5a9ef1047b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020780"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ncam_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PD5" metaid="e0007e94-29e4-4615-90ae-66b2a8ea76f4" name="glycerol_3_phosphate_dehydrogenase__ubiquinone_8_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020700</p> + <p>SUBSYSTEM: Glycerol_Degradation</p> + <p>EC_NUMBER: 1.1.5.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e0007e94-29e4-4615-90ae-66b2a8ea76f4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.5.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020700"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTPCI" metaid="_8228c5ad-649a-49e1-be1f-4c1f6da9d41b" name="GTP_cyclohydrolase_I" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001100</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.5.4.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8228c5ad-649a-49e1-be1f-4c1f6da9d41b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ahdt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HEPT3" metaid="_61f4e47d-1ec6-4b63-8e55-8290a85c1049" name="R_HEPT3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019540</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_61f4e47d-1ec6-4b63-8e55-8290a85c1049"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_adphep_LD_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phhlipidA_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hphhlipidA_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PD2" metaid="f56c2f7a-1537-4b9c-bbf8-8645b86821d8" name="glycerol_3_phosphate_dehydrogenase__NADP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018110</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.1.1.94</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f56c2f7a-1537-4b9c-bbf8-8645b86821d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.94"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018110"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NACtex" metaid="_5f683c5e-d94b-4fef-839b-3363659b8be3" name="Nicotinic_acid_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f683c5e-d94b-4fef-839b-3363659b8be3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nac_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nac_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_P5CG" metaid="_01ee6104-d3d1-4fbc-ba9e-8651bff7eb2f" name="R_P5CG" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01ee6104-d3d1-4fbc-ba9e-8651bff7eb2f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu5sa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_1pyr5c_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CDGS" metaid="_297a559f-86bd-4d65-9a6d-81df9ee5d9ea" name="7_deaza_7_carboxyguanine_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_016450</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.3.99.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_297a559f-86bd-4d65-9a6d-81df9ee5d9ea"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.99.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016450"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cph4_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cdg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_P5CD" metaid="bf8bce5c-5964-426a-8ddd-934248037087" name="1_pyrroline_5_carboxylate_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 1.5.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bf8bce5c-5964-426a-8ddd-934248037087"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_1pyr5c_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CDGR" metaid="b12453cd-1703-4b8e-8a28-dd0d81dc44ad" name="7_cyano_7_deazaguanine_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021550</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.7.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b12453cd-1703-4b8e-8a28-dd0d81dc44ad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.7.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_preq0_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_preq1_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DGK1" metaid="_9f81734d-b4bd-41d4-8ddf-79e9695a25a9" name="deoxyguanylate_kinase__dGMP_ATP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002650</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9f81734d-b4bd-41d4-8ddf-79e9695a25a9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dgmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dgdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT120" metaid="_8fbb9223-3e34-4dca-b9f7-5d7ab75b20e5" name="R_G3PAT120" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8fbb9223-3e34-4dca-b9f7-5d7ab75b20e5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ddcaACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_1ddecg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PHETRS" metaid="d7ced00b-f100-410f-aaeb-4d131894d762" name="Phenylalanyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011750 AND XFCFBP8418_011760</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d7ced00b-f100-410f-aaeb-4d131894d762"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011750"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011760"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phe_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaphe_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phetrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGLYCP" metaid="b7c0d0ef-b131-43f4-8db4-e4314519c5a0" name="Phosphoglycolate_phosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005170</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.1.3.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b7c0d0ef-b131-43f4-8db4-e4314519c5a0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005170"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2pglyc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyclt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGtex" metaid="c0a2be14-66bf-4a69-91bb-52745a063137" name="L_arginine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c0a2be14-66bf-4a69-91bb-52745a063137"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_arg_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_arg_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAMAS" metaid="_6ebf5651-80a6-4232-ac63-3082145b32ca" name="UDP_N_acetylmuramoyl_L_alanine_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011250</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6ebf5651-80a6-4232-ac63-3082145b32ca"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uamr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uama_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADNUC" metaid="_36c795ab-3c17-4599-a6b7-1b9a0fd6f7ec" name="adenosine_hydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.2.2.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_36c795ab-3c17-4599-a6b7-1b9a0fd6f7ec"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.2.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ade_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_rib_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADNt2pp" metaid="c3206781-27f3-4c37-9dc2-c78669cf6757" name="R_ADNt2pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c3206781-27f3-4c37-9dc2-c78669cf6757"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_adn_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NOtpp" metaid="_78e5aea7-2ac6-4a3c-830f-daf94491487e" name="NO_transport__diffusion_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_78e5aea7-2ac6-4a3c-830f-daf94491487e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_no_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_no_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XYLtex" metaid="fa6915be-2f49-4f71-8fcd-6aebad75ef47" name="R_XYLtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fa6915be-2f49-4f71-8fcd-6aebad75ef47"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_xyl_D_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_xyl_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_P5CR" metaid="_158dba30-14f5-401a-b1d8-12dcb1535288" name="pyrroline_5_carboxylate_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013370</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 1.5.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_158dba30-14f5-401a-b1d8-12dcb1535288"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013370"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_1pyr5c_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL120t2pp" metaid="_94eba020-6f77-43c1-9fe5-bb1bd7e6aad6" name="fatty_acid_CoA_ligase__dodecanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_94eba020-6f77-43c1-9fe5-bb1bd7e6aad6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ddca_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ddcacoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LYSTRS" metaid="_018c56f1-8d37-413b-bb73-e5f0af6dc277" name="Lysyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023900</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_018c56f1-8d37-413b-bb73-e5f0af6dc277"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_lys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnalys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lystrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLTGY4pp" metaid="b2dfa850-588a-40c9-a419-56474c2e0f12" name="murein_lytic_transglycosylase__murein4px4p4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_003940 ) OR ( XFCFBP8418_019770 )</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b2dfa850-588a-40c9-a419-56474c2e0f12"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019770"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein4px4p4p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4px4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDPGLCUR4EP" metaid="_272c6c48-7392-44f5-8b9d-7f29e040131e" name="R_UDPGLCUR4EP" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020820</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 5.1.3.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_272c6c48-7392-44f5-8b9d-7f29e040131e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.3.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udpglcur_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_udpgalur_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PTPAT" metaid="f30e63e6-c461-4c82-be34-8bca956defa3" name="pantetheine_phosphate_adenylyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025440</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f30e63e6-c461-4c82-be34-8bca956defa3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025440"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pan4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dpcoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GRXR" metaid="a46ca013-5f71-401c-8638-1c1d74832e05" name="glutaredoxin_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012410</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.8.4.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a46ca013-5f71-401c-8638-1c1d74832e05"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.4.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012410"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gthox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUDxi" metaid="bc91dd32-ffce-4384-a9af-332161bfeedb" name="R_GLUDxi" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001660</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: 1.4.1.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bc91dd32-ffce-4384-a9af-332161bfeedb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.4.1.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001660"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OCBT" metaid="_5964bf74-d6e5-4ce0-93d3-c13c6acea5bc" name="ornithine_carbamoyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025290</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 2.1.3.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5964bf74-d6e5-4ce0-93d3-c13c6acea5bc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.3.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025290"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_orn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cbp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_citr_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MEPCT" metaid="_17165073-998e-4383-8135-c93aeb2917b9" name="2_C_methyl_D_erythritol_4_phosphate_cytidylyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022200</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_17165073-998e-4383-8135-c93aeb2917b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022200"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2me4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4c2me_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UM4PL" metaid="_53df3af8-acf6-4da2-bf15-451e744c9a05" name="UDP_N_acetylmuramate_L_alanyl_gamma_D_glutamyl_meso_diaminopimelate_D_alanine_ligase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026060</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: 6.3.2.45</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_53df3af8-acf6-4da2-bf15-451e744c9a05"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.45"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026060"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uamr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdapDala_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_um4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP141" metaid="_73fd0d3c-0584-4c1b-948f-a56883aee2d2" name="phosphatidylglycerol_phosphate_phosphatase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_73fd0d3c-0584-4c1b-948f-a56883aee2d2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pg141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_o2_e" metaid="_646a44a4-5b92-488c-9b8e-b9fe9e3dfa92" name="R_EX_o2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_646a44a4-5b92-488c-9b8e-b9fe9e3dfa92"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_o2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADMDCr" metaid="_4822dbc6-d580-47d8-9c1c-9835a304b3e9" name="Adenosylmethionine_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002270</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 4.1.1.50</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4822dbc6-d580-47d8-9c1c-9835a304b3e9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.50"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002270"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ametam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP140" metaid="e4b730ae-8294-4c36-b8a6-d0a83b9a9a82" name="phosphatidylglycerol_phosphate_phosphatase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e4b730ae-8294-4c36-b8a6-d0a83b9a9a82"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pg140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACCOACr" metaid="_9a723345-b105-440f-adb5-ccdf64f4e741" name="R_ACCOACr" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003020 AND XFCFBP8418_014550 AND XFCFBP8418_014560 AND XFCFBP8418_026800</p> + <p>SUBSYSTEM: Membrane_Lipid_Metabolism</p> + <p>EC_NUMBER: 6.4.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a723345-b105-440f-adb5-ccdf64f4e741"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.4.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026800"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014560"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003020"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014550"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hco3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_malcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ULA4NFT" metaid="_6b3c7323-6ecc-41de-ac76-774c1351a483" name="R_ULA4NFT" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006440</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.1.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6b3c7323-6ecc-41de-ac76-774c1351a483"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006440"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_10fthf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpLa4n_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpLa4fn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_URAtex" metaid="f361a2e8-85b7-41d8-9aeb-6581c6c97fdd" name="R_URAtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f361a2e8-85b7-41d8-9aeb-6581c6c97fdd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ura_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ura_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDEP2pp" metaid="_53a270fc-b2b1-44b6-850e-cd29a6c12160" name="murein_D_D_endopeptidase__murein3px4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_53a270fc-b2b1-44b6-850e-cd29a6c12160"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_murein3px4p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4p3p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRAIS" metaid="_8aceeb76-a43c-4b0b-80c2-3932021ab547" name="phosphoribosylaminoimidazole_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006650</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 6.3.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8aceeb76-a43c-4b0b-80c2-3932021ab547"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fpram_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_air_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_cobalt2_e" metaid="_089057f2-9126-4ed3-9ed5-549b47a61c69" name="R_EX_cobalt2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_089057f2-9126-4ed3-9ed5-549b47a61c69"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_cobalt2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SULabcpp" metaid="eb51e90d-10c2-448b-96d2-005c175b90c1" name="sulfate_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004070 AND XFCFBP8418_004080 AND XFCFBP8418_004090 AND XFCFBP8418_004100</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eb51e90d-10c2-448b-96d2-005c175b90c1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004100"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004080"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_so4_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_so4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP160abcpp" metaid="_2bcff870-8734-42d6-a979-38b35526bbce" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C16_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2bcff870-8734-42d6-a979-38b35526bbce"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp160_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACALDtpp" metaid="_4c8dad63-4c56-4843-8e1b-dcd6a2151f97" name="R_ACALDtpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4c8dad63-4c56-4843-8e1b-dcd6a2151f97"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acald_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acald_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSDtex" metaid="_17999d1d-0dac-4cb1-a5b1-b1cb4734d30e" name="R_CYSDtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_17999d1d-0dac-4cb1-a5b1-b1cb4734d30e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_D_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cys_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DMQMT" metaid="f192174a-4e57-4847-bd91-879239e05dbe" name="3_Dimethylubiquinonol_3_methyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005180</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.1.1.64</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f192174a-4e57-4847-bd91-879239e05dbe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.64"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2omhmbl_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ahcys_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SPMDabcpp" metaid="c5945588-1dab-4e2e-ac23-11a842cff4b9" name="spermidine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.31</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c5945588-1dab-4e2e-ac23-11a842cff4b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_spmd_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_spmd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPO5" metaid="c9b32a8b-ef71-4fc9-84f2-8f381ce673cc" name="L_aspartate_oxidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000550</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c9b32a8b-ef71-4fc9-84f2-8f381ce673cc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iasp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAGCVT" metaid="d78d7c18-3e2f-4bb8-ae04-6dcad5b190d1" name="UDP_N_acetylglucosamine_1_carboxyvinyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003450</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d78d7c18-3e2f-4bb8-ae04-6dcad5b190d1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003450"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uacgam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_uaccg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPO3" metaid="df514e5b-3ab3-485e-99b3-e3f85b6fb9d6" name="R_ASPO3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000550</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#df514e5b-3ab3-485e-99b3-e3f85b6fb9d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iasp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_h2o_e" metaid="_61cec249-2342-4783-8c02-2d66ef9bd2b7" name="R_EX_h2o_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_61cec249-2342-4783-8c02-2d66ef9bd2b7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MTHFR2" metaid="_152f1441-c730-4edb-8fe8-db9ebe5ffd36" name="5_10_methylenetetrahydrofolate_reductase__NADH_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023810</p> + <p>SUBSYSTEM: Folate_Metabolism</p> + <p>EC_NUMBER: 1.5.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_152f1441-c730-4edb-8fe8-db9ebe5ffd36"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_5mthf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Actex" metaid="_79c4f963-40f3-4233-8ecd-eaab21f9a788" name="R_Actex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_79c4f963-40f3-4233-8ecd-eaab21f9a788"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_na1_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_ac_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ac_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_na1_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G1PACT" metaid="_253f3d72-ff88-4265-a00e-0c4e07886924" name="glucosamine_1_phosphate_N_acetyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023670</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.157</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_253f3d72-ff88-4265-a00e-0c4e07886924"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.157"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023670"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gam1p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acgam1p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2Stpp" metaid="_97e52e9f-73df-4d9e-92d4-050a7fbb8b07" name="R_H2Stpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_97e52e9f-73df-4d9e-92d4-050a7fbb8b07"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2s_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2s_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS140pp" metaid="_84c0c025-1c66-4a5a-9f81-a073f398525c" name="cardiolipin_synthase__periplasmic__n_C14_0_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_84c0c025-1c66-4a5a-9f81-a073f398525c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pg140_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_clpn140_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UHGADAXF" metaid="_39eef7af-9647-4237-b574-67b855d7791e" name="R_UHGADAXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011190</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.5.1.108</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_39eef7af-9647-4237-b574-67b855d7791e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.108"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011190"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_u3aga_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_u3hga_XF_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPO6" metaid="ecfae277-ee16-4d2b-8dda-a9810b0053c2" name="L_aspartate_oxidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000550</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ecfae277-ee16-4d2b-8dda-a9810b0053c2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iasp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PANTS" metaid="_16d88e10-4b9d-4556-a796-6b1258ad22fa" name="pantothenate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026550</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_16d88e10-4b9d-4556-a796-6b1258ad22fa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pant_R_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_B_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pnto_R_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_co2_e" metaid="_2711df0f-e364-4cea-8eee-b6f411cdfa9e" name="R_EX_co2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2711df0f-e364-4cea-8eee-b6f411cdfa9e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_co2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSP" metaid="_4641d575-ba0f-40e8-a26d-932fb2108f61" name="R_PSP" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> + <p>EC_NUMBER: 3.1.3.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4641d575-ba0f-40e8-a26d-932fb2108f61"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD180" metaid="b94c0c09-7ccb-4593-b50a-9da601600d3c" name="Phosphatidylserine_decarboxylase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 4.1.1.65</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b94c0c09-7ccb-4593-b50a-9da601600d3c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ps180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + 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</bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdapDala_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD181" metaid="a5849849-8097-47e6-9bf0-a05c53ddde4b" name="Phosphatidylserine_decarboxylase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 4.1.1.65</p> + 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stoichiometry="2"/> + <speciesReference constant="true" species="M_no_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_no3_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2tpp" metaid="fed4783d-7b15-4b74-88bc-2fbfb4de6b6f" name="R_H2tpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fed4783d-7b15-4b74-88bc-2fbfb4de6b6f"> + 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No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9ddb6a17-a564-4404-aa8d-38886cdd19b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr160_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_12dgr160_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OMBZLM" metaid="_01570b3c-6b93-4c60-9833-0752ff28d461" name="2_Octaprenyl_6_methoxy_benzoquinol_methylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002810</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.1.1.201</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01570b3c-6b93-4c60-9833-0752ff28d461"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.201"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2ombzl_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2ommbl_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ahcys_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TSULabcpp" metaid="_8460b634-1a44-4244-a0ef-84ccf29747a9" name="thiosulfate_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004070 AND XFCFBP8418_004080 AND XFCFBP8418_004090 AND XFCFBP8418_004100</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8460b634-1a44-4244-a0ef-84ccf29747a9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004100"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004080"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tsul_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tsul_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRTRS" metaid="b8eab933-0fa6-4c20-bedd-edae289ea018" name="Threonyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011800</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b8eab933-0fa6-4c20-bedd-edae289ea018"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnathr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thr_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thrtrna_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRAGSr" metaid="_013f4f8f-0241-4957-bada-351b1d2228a8" name="phosphoribosylglycinamide_synthase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001040</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 6.3.4.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_013f4f8f-0241-4957-bada-351b1d2228a8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001040"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pram_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gar_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP160" metaid="_2eb409c6-b02a-4490-962f-92cb2676f703" name="phosphatidylglycerol_phosphate_phosphatase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2eb409c6-b02a-4490-962f-92cb2676f703"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg160_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYStex" metaid="ab144e88-6902-4e91-ae5a-c420ed7d4cc7" name="L_cysteine_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ab144e88-6902-4e91-ae5a-c420ed7d4cc7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cys_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HCO3E" metaid="c28c9d1c-57dd-419d-925b-53bc5d6054f3" name="HCO3_equilibration_reaction" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010460</p> + <p>SUBSYSTEM: Cyanate_degradation</p> + <p>EC_NUMBER: 4.2.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c28c9d1c-57dd-419d-925b-53bc5d6054f3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010460"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hco3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP161" metaid="_69083ce4-81a0-4c4a-beaa-6b65e08b2e1b" name="phosphatidylglycerol_phosphate_phosphatase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_69083ce4-81a0-4c4a-beaa-6b65e08b2e1b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pg161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TMPKr" metaid="_0198f89e-6891-4d38-bcb7-5edf188f5c07" name="thiamine_phosphate_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009740</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.4.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0198f89e-6891-4d38-bcb7-5edf188f5c07"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009740"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thmmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thmpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_FRMD" metaid="ce369cc1-6ad5-4d1b-bf90-592514d09e8b" name="R_DM_FRMD" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ce369cc1-6ad5-4d1b-bf90-592514d09e8b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_frmd_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS9" metaid="_5bc43a5a-6127-4454-ba97-cb53be9790ed" name="R_AACPS9" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025958</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5bc43a5a-6127-4454-ba97-cb53be9790ed"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025958"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_octa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ocACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OPHBDC" metaid="_4df281e2-fe01-4f86-b3c4-59a537c52c37" name="Octaprenyl_hydroxybenzoate_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4df281e2-fe01-4f86-b3c4-59a537c52c37"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ophb_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2oph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL141t2pp" metaid="_0b52d4fd-a030-47fb-99bf-0a40e19a3cb4" name="fatty_acid_CoA_ligase__tetradecenoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0b52d4fd-a030-47fb-99bf-0a40e19a3cb4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ttdcea_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdecoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADNtex" metaid="_5401ac99-0289-4bde-806c-67175d1ede26" name="Adenosine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5401ac99-0289-4bde-806c-67175d1ede26"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_adn_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adn_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACt2rex" metaid="c7e5b008-44fc-4774-91ff-3ac43427dd93" name="R_ACt2rex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c7e5b008-44fc-4774-91ff-3ac43427dd93"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ac_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ac_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDPG4E" metaid="_4d72f9cb-f661-4f28-9738-3104f805018d" name="UDPglucose_4_epimerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 5.1.3.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4d72f9cb-f661-4f28-9738-3104f805018d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.3.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udpg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_udpgal_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP11" metaid="_39c287d2-22d6-4e29-ba3e-c41135c6196b" name="Nucleoside_triphosphate_pyrophosphorylase__xtp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002620</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_39c287d2-22d6-4e29-ba3e-c41135c6196b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP10" metaid="ac88c72c-c847-4b90-a7cf-67d2b7d7baba" name="Nucleoside_triphosphate_pyrophosphorylase__ditp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002620</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ac88c72c-c847-4b90-a7cf-67d2b7d7baba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ditp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dimp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AKP1" metaid="_5f39b478-414d-4cff-80b0-3471249098b5" name="alkaline_phosphatase__Dihydroneopterin_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006010</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.1.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f39b478-414d-4cff-80b0-3471249098b5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006010"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ahdt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="3"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_dhnpt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDCP3App" metaid="_46a42bc0-a5a3-4663-b4f2-098b6013a76d" name="murein_L_D_carboxypeptidase__murein5px3p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.17.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_46a42bc0-a5a3-4663-b4f2-098b6013a76d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5px3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein3px3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_alaala_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_fru_e" metaid="bd070f57-ef0c-4e22-8ebb-4b130fee5e15" name="R_EX_fru_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bd070f57-ef0c-4e22-8ebb-4b130fee5e15"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_fru_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G5SD" metaid="_5e5a6203-6e16-45a3-ac35-68474577faeb" name="glutamate_5_semialdehyde_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025220</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 1.2.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5e5a6203-6e16-45a3-ac35-68474577faeb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025220"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu5sa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG120abcpp" metaid="_1975a1ad-dcdc-4c11-8cc8-585ca1e0189d" name="phosphatidylglycerol_transport_via_ABC_system__n_C12_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1975a1ad-dcdc-4c11-8cc8-585ca1e0189d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg120_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg120_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALATRS" metaid="_10bf1fc9-8ae9-4c5e-b9a5-1272e728f66b" name="Alanyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015200</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_10bf1fc9-8ae9-4c5e-b9a5-1272e728f66b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015200"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaala_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_alatrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UGLT" metaid="f5315705-4bdc-4bd0-bde5-4086d5e04555" name="UDPglucose__hexose_1_phosphate_uridylyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.7.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f5315705-4bdc-4bd0-bde5-4086d5e04555"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gal1p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g1p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpgal_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGDI_1" metaid="_9a35f452-ad2d-45eb-968e-861d802e0d77" name="R_AGDI_1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004890</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 3.5.3.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a35f452-ad2d-45eb-968e-861d802e0d77"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.3.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_agm_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_Ncbmpts_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ICYSDS" metaid="c5d2b5ae-ffc2-4230-b55c-96ce23335f77" name="ISC_Cysteine_desulfuration" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002960</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c5d2b5ae-ffc2-4230-b55c-96ce23335f77"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iscs_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iscssh_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS160pp" metaid="_5537e257-21c6-450f-a2aa-66f24e786a4b" name="cardiolipin_synthase__periplasmic__n_C16_0_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5537e257-21c6-450f-a2aa-66f24e786a4b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pg160_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_clpn160_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UGMDDS" metaid="_6a1f65bb-3745-42d0-938e-35e94dab6724" name="UDP_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_alanine_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011290</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6a1f65bb-3745-42d0-938e-35e94dab6724"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011290"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_alaala_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ugmd_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ugmda_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALAt2pp" metaid="_3b2d1e9b-1c85-4c12-82dd-7cff859a2796" name="L_alanine_transport_in_via_proton_symport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3b2d1e9b-1c85-4c12-82dd-7cff859a2796"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS8" metaid="_083a9bec-2e42-4a56-9543-5e74f0b5fbec" name="R_AACPS8" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025957</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_083a9bec-2e42-4a56-9543-5e74f0b5fbec"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025957"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dca_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dcaACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ETOHtrpp" metaid="be0ab22f-7c5e-46a5-912b-90282c14ca8d" name="R_ETOHtrpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#be0ab22f-7c5e-46a5-912b-90282c14ca8d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_etoh_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_etoh_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA161" metaid="c5cb8e82-ea82-41ec-97c0-030e7cfc14c8" name="Phosphatidylserine_syntase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c5cb8e82-ea82-41ec-97c0-030e7cfc14c8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdhdec9eg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ps161_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS7" metaid="_881173e0-e214-4f00-9868-da894511bbf9" name="R_AACPS7" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025956</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_881173e0-e214-4f00-9868-da894511bbf9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025956"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ddca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ddcaACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA160" metaid="_3af0fb3a-041f-49ca-a021-1dff6738a72b" name="Phosphatidylserine_syntase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3af0fb3a-041f-49ca-a021-1dff6738a72b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdhdecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ps160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS6" metaid="_72e77e6a-c3b9-43cc-b100-5758dbd25509" name="R_AACPS6" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025955</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_72e77e6a-c3b9-43cc-b100-5758dbd25509"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025955"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ocdca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ocdcaACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MMSAD3" metaid="c4305d14-50b5-4e44-9117-70f366f9fc84" name="methylmalonate_semialdehyde_dehydrogenase__malonic_semialdehyde_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.2.1.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c4305d14-50b5-4e44-9117-70f366f9fc84"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_msa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS5" metaid="cc8eef06-b2af-4f40-a78c-dd54928aa991" name="R_AACPS5" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025954</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cc8eef06-b2af-4f40-a78c-dd54928aa991"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025954"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ocdcea_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_octeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS4" metaid="_5058549f-0714-424c-bdba-27365bbd9aef" name="R_AACPS4" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025953</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5058549f-0714-424c-bdba-27365bbd9aef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025953"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hdcea_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hdeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LYSt3r" metaid="_4eee9502-90f0-4fef-b8f3-ceedca7c6099" name="R_LYSt3r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013540</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4eee9502-90f0-4fef-b8f3-ceedca7c6099"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_lys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_lys_L_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS3" metaid="ebe987f4-b5a1-4b5c-b3a0-ee9e21ca82ba" name="R_AACPS3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025952</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ebe987f4-b5a1-4b5c-b3a0-ee9e21ca82ba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025952"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hdca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_palmACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OCOAT1r" metaid="_42a21866-b7d0-4ff6-8ee2-8d37d998c3ec" name="3_oxoacid_CoA_transferase__Succinyl_CoA__acetoacetate_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.8.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_42a21866-b7d0-4ff6-8ee2-8d37d998c3ec"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.8.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_succoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acac_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_aacoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYC3Pabcpp" metaid="_242fc832-4f77-4608-b964-ee1b8debb0a3" name="sn_Glycerol_3_phosphate_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_242fc832-4f77-4608-b964-ee1b8debb0a3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS120" metaid="_4fc491f7-a221-48ec-9446-38f1687f0093" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4fc491f7-a221-48ec-9446-38f1687f0093"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dcaACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3oddecACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS2" metaid="_6000cb6e-ade8-45f3-98e9-39dc1d414e56" name="R_AACPS2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025951</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6000cb6e-ade8-45f3-98e9-39dc1d414e56"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025951"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ttdcea_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOX1tex" metaid="_93de9196-0857-4430-a373-86039c814f4d" name="R_METSOX1tex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_93de9196-0857-4430-a373-86039c814f4d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_metsox_S_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_metsox_S_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS121" metaid="_7dc727be-3606-40dd-9c9a-7ba4444a936c" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C12_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7dc727be-3606-40dd-9c9a-7ba4444a936c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdec3eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3ocddec5eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS1" metaid="_9d4ae961-5fcc-416e-8f9f-dbc6ca85a10a" name="R_AACPS1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9d4ae961-5fcc-416e-8f9f-dbc6ca85a10a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ttdca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_myrsACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FMNRx2" metaid="d4736fee-2215-4fbb-a33e-71063cbc9056" name="FMN_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002700 AND XFCFBP8418_002710</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.5.1.38</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d4736fee-2215-4fbb-a33e-71063cbc9056"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.38"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002710"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002700"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fmn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fmnh2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_LesA_e" metaid="_97bd024a-a074-4c59-b585-7cd099d362f0" name="R_DM_LesA_e" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_97bd024a-a074-4c59-b585-7cd099d362f0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_LesA_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL80t2pp" metaid="_901fc987-d81e-4e25-a9b6-683c318ff94d" name="fatty_acid_CoA_ligase__octanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_901fc987-d81e-4e25-a9b6-683c318ff94d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_octa_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_occoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP181" metaid="_44c752e9-a069-476f-93a5-d633b4fb84d5" name="phosphatidylglycerol_phosphate_phosphatase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_44c752e9-a069-476f-93a5-d633b4fb84d5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp181_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg181_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP180" metaid="_9bf18a9c-6d98-4bce-852e-d76f7cb4166b" name="phosphatidylglycerol_phosphate_phosphatase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9bf18a9c-6d98-4bce-852e-d76f7cb4166b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp180_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pg180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGAMT" metaid="_6703ddcc-d856-4bb4-81b8-3bee381864bc" name="phosphoglucosamine_mutase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003010</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 5.4.2.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6703ddcc-d856-4bb4-81b8-3bee381864bc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003010"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gam1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gam6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FORtppi" metaid="b520ec68-f923-44e9-8ec6-1d9682bc9a43" name="formate_transport_via_diffusion__cytoplasm_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b520ec68-f923-44e9-8ec6-1d9682bc9a43"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_for_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3PEPTabcpp" metaid="af26fc82-0b1d-48f8-9a47-605ace91c3ef" name="tripeptide__LalaDgluMdap__transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004070 ) OR ( XFCFBP8418_004550 ) OR ( XFCFBP8418_007680 ) OR ( XFCFBP8418_010500 ) OR ( XFCFBP8418_013240 ) OR ( XFCFBP8418_019450 ) OR ( XFCFBP8418_022120 ) OR ( XFCFBP8418_024570 ) OR ( XFCFBP8418_024670 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#af26fc82-0b1d-48f8-9a47-605ace91c3ef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019450"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024570"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013240"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdap_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdap_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SDPDS" metaid="_443aa0fb-d4f8-44c9-8b90-4dd6660bb936" name="succinyl_diaminopimelate_desuccinylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015120</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 3.5.1.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_443aa0fb-d4f8-44c9-8b90-4dd6660bb936"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015120"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sl26da_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_26dap_LL_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Kt2tex" metaid="_91524f00-6fa5-476e-a636-6f8fc06a942d" name="R_Kt2tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_91524f00-6fa5-476e-a636-6f8fc06a942d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_k_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_k_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EPStexXF" metaid="_3d1726d9-e87d-47e6-a3cc-04bcf384654e" name="R_EPStexXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021490</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d1726d9-e87d-47e6-a3cc-04bcf384654e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021490"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_EPS_XF_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_EPS_XF_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE160abcpp" metaid="_34f9a2fd-7e5b-4a2f-bf94-760e334fbeb7" name="phosphatidylethanolamine_transport_via_ABC_system__n_C16_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_34f9a2fd-7e5b-4a2f-bf94-760e334fbeb7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe160_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR140tipp" metaid="a83a9158-b98d-4ead-b7b5-a0fde97b8ed5" name="R_12DGR140tipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a83a9158-b98d-4ead-b7b5-a0fde97b8ed5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr140_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_12dgr140_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_so3_e" metaid="_3bb6c9dd-2ae2-4a45-ab92-96297b8b53e0" name="R_EX_so3_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3bb6c9dd-2ae2-4a45-ab92-96297b8b53e0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_so3_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THYMtex" metaid="_2e56144f-24f5-4667-80e1-80365102e1f7" name="R_THYMtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2e56144f-24f5-4667-80e1-80365102e1f7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thym_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_thym_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LPSS2XF" metaid="_3df2e4a4-fd35-4c2f-871d-5aa2f6284b02" name="R_LPSS2XF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001200</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3df2e4a4-fd35-4c2f-871d-5aa2f6284b02"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001200"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_core_kdo2lip6_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpxyl_c" stoichiometry="320"/> + <speciesReference constant="true" species="M_dtdprmn_c" stoichiometry="2188"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dtdp_c" stoichiometry="2188"/> + <speciesReference constant="true" species="M_OLPS_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="320"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACCOAL2r" metaid="_938a464e-1718-4a3f-b0e1-3d0889fd7471" name="R_ACCOAL2r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020630</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 6.2.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_938a464e-1718-4a3f-b0e1-3d0889fd7471"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ppa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP180abcpp" metaid="_2b89ef9a-099e-401d-bdd2-f1b9270863b4" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C18_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2b89ef9a-099e-401d-bdd2-f1b9270863b4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp180_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TREHpp" metaid="b82dba7e-27f5-4078-89c5-c8b9dcd5e769" name="alpha_alpha_trehalase__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.2.1.28</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b82dba7e-27f5-4078-89c5-c8b9dcd5e769"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.28"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tre_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glc_D_p" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TTDCEAtexi" metaid="_60d4b136-801a-4f2e-8c68-7d58c19960df" name="R_TTDCEAtexi" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_60d4b136-801a-4f2e-8c68-7d58c19960df"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ttdcea_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ttdcea_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KAS14" metaid="_7bdb0e75-55bc-4fe1-bf0d-6888bf0d0261" name="beta_ketoacyl_ACP_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Membrane_Lipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7bdb0e75-55bc-4fe1-bf0d-6888bf0d0261"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_actACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE2tex" metaid="f7661dec-e864-4895-a1c8-389b04f18a43" name="iron__II__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f7661dec-e864-4895-a1c8-389b04f18a43"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fe2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fe2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_AMOB" metaid="dcaacf85-ca34-4e84-9012-59026c2aa5a0" name="Sink_needed_to_allow_S_Adenosyl_4_methylthio_2_oxobutanoate_to_leave_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dcaacf85-ca34-4e84-9012-59026c2aa5a0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amob_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALLTNr" metaid="c5916cf1-d154-4738-be1f-27ed22e93f83" name="R_ALLTNr" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025380</p> + <p>SUBSYSTEM: Nitrogen_Metabolism</p> + <p>EC_NUMBER: 3.5.2.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c5916cf1-d154-4738-be1f-27ed22e93f83"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.2.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025380"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_alltn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_alltt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GALKr" metaid="_1b061ea9-269a-4250-b937-b58c2e495156" name="galactokinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1b061ea9-269a-4250-b937-b58c2e495156"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gal_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gal1p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KAS15" metaid="f7e312d1-3191-40ab-8df4-da52647f585d" name="beta_ketoacyl_ACP_synthase__2_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017940</p> + <p>SUBSYSTEM: Membrane_Lipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.180</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f7e312d1-3191-40ab-8df4-da52647f585d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.180"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017940"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_actACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MPTG" metaid="cdcd4102-ac04-4274-9c28-635253283c7b" name="murein_polymerizing_transglycosylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004700 AND XFCFBP8418_008630 ) OR ( XFCFBP8418_004700 AND XFCFBP8418_010420 ) OR ( XFCFBP8418_004700 AND XFCFBP8418_020460 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cdcd4102-ac04-4274-9c28-635253283c7b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020460"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010420"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uaagmda_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_udcpdp_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAGPT3" metaid="b0f5ce42-1b54-4bf5-850c-120ea691fa8a" name="UDP_N_acetylglucosamine_N_acetylmuramyl__pentapeptide_pyrophosphoryl_undecaprenol_N_acetylglucosamine_transferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011260</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.4.1.227</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b0f5ce42-1b54-4bf5-850c-120ea691fa8a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.1.227"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011260"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uagmda_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uacgam_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_uaagmda_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA181" metaid="ac6bbdd2-a452-49af-a324-bea473b59609" name="Phosphatidylserine_syntase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ac6bbdd2-a452-49af-a324-bea473b59609"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdodec11eg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ps181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS100" metaid="_7838ce1b-c744-4ef7-b2cc-c53afa1ac0a2" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C10_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7838ce1b-c744-4ef7-b2cc-c53afa1ac0a2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ocACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3odecACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA180" metaid="e090a074-5339-4dc6-999e-1b5d6b1f9c99" name="Phosphatidylserine_syntase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e090a074-5339-4dc6-999e-1b5d6b1f9c99"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdodecg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ps180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAGDP" metaid="_7d0efe00-c44c-4c84-b6fb-e21815fc8e35" name="UDP_N_acetylglucosamine_diphosphorylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023670</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.23</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7d0efe00-c44c-4c84-b6fb-e21815fc8e35"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023670"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acgam1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uacgam_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACCITRH" metaid="beab3f41-ac76-4242-925b-87d9c7fed86a" name="R_ACCITRH" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025270</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: 3.5.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#beab3f41-ac76-4242-925b-87d9c7fed86a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025270"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_accitr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_citr_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NAt3_1" metaid="c13f60cb-78c9-45d6-8713-98dc58e03a49" name="R_NAt3_1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001440</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c13f60cb-78c9-45d6-8713-98dc58e03a49"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001440"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_na1_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_na1_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_chitin_polymer_e" metaid="_433c8e40-7bec-4183-8a78-017746677832" name="R_EX_chitin_polymer_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_433c8e40-7bec-4183-8a78-017746677832"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_chitin_polymer_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IPPMIb" metaid="f8f8e4fd-f967-4d82-860a-e95897d7c117" name="2_isopropylmalate_hydratase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021510 AND XFCFBP8418_021520</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.33</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f8f8e4fd-f967-4d82-860a-e95897d7c117"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.33"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021520"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021510"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2ippm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3c3hmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IPPMIa" metaid="d0487c14-22ef-4ec4-91f1-7a4b60b01854" name="3_isopropylmalate_dehydratase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021510 AND XFCFBP8418_021520</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.33</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d0487c14-22ef-4ec4-91f1-7a4b60b01854"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.33"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021520"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021510"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3c2hmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2ippm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADEt2rpp" metaid="_57ae459d-f59e-404a-867e-2fb6c241c5fb" name="adenine_transport_via_proton_symport__reversible___periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_57ae459d-f59e-404a-867e-2fb6c241c5fb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ade_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ade_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UREA" metaid="e53cacbc-1df2-45a8-87e3-888fc0cc1d8b" name="urease" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 3.5.1.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e53cacbc-1df2-45a8-87e3-888fc0cc1d8b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_urea_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG141abcpp" metaid="a6b6b0c3-0333-4a06-9d42-71915151005e" name="phosphatidylglycerol_transport_via_ABC_system__n_C14_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a6b6b0c3-0333-4a06-9d42-71915151005e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg141_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRPPS" metaid="c1d21756-841a-4c8f-a3ec-050b279a553c" name="phosphoribosylpyrophosphate_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012870</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 2.7.6.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c1d21756-841a-4c8f-a3ec-050b279a553c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.6.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT120" metaid="_3bfe3995-07a7-478d-afcb-33082a6a791a" name="1_tetradecanoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3bfe3995-07a7-478d-afcb-33082a6a791a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ddcaACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_1ddecg3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa120_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN181" metaid="b2ea9316-62d4-4d5f-8377-74f4f759ee1a" name="CDP_diacylglycerol_synthetase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.7.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b2ea9316-62d4-4d5f-8377-74f4f759ee1a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pa181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cdpdodec11eg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_X5PL3E" metaid="a132e0d4-615d-4cb2-80d5-b164796db653" name="R_X5PL3E" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a132e0d4-615d-4cb2-80d5-b164796db653"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_xu5p_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ru5p_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HPPK2" metaid="_47036610-be70-43b0-8ff1-24d147c86c79" name="6_hydroxymethyl_dihydropterin_pyrophosphokinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026570</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.6.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_47036610-be70-43b0-8ff1-24d147c86c79"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.6.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_6hmhpt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_6hmhptpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE180abcpp" metaid="ac3dee43-de4a-4448-9370-ecc7926b2fa4" name="phosphatidylethanolamine_transport_via_ABC_system__n_C18_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ac3dee43-de4a-4448-9370-ecc7926b2fa4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe180_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN180" metaid="fff29606-f162-4780-93f3-475b874c2f59" name="CDP_diacylglycerol_synthetase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.7.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fff29606-f162-4780-93f3-475b874c2f59"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdodecg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDCPDPtppi" metaid="_7a4c3dd9-4e12-466f-9bbc-3dbdb36e3b6d" name="R_UDCPDPtppi" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7a4c3dd9-4e12-466f-9bbc-3dbdb36e3b6d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udcpdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_udcpdp_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CD2tex" metaid="cee97fe3-a814-4f9d-b69d-6cdb53aabc3f" name="cadmium__Cd_2__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cee97fe3-a814-4f9d-b69d-6cdb53aabc3f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cd2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cd2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_rib_D_e" metaid="_20e83a14-6cb4-4e1b-9c32-bfa6604418b3" name="R_EX_rib_D_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_20e83a14-6cb4-4e1b-9c32-bfa6604418b3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_rib_D_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYCt" metaid="_5300ba34-0572-43a1-8e4b-7766ce41b435" name="R_GLYCt" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020710</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5300ba34-0572-43a1-8e4b-7766ce41b435"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_2THZPSN" metaid="_29ed181c-b67e-4396-8010-a03a6ca9a424" name="R_2THZPSN" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002960 AND XFCFBP8418_010710 AND XFCFBP8418_011380 AND XFCFBP8418_025440</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_29ed181c-b67e-4396-8010-a03a6ca9a424"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025440"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011380"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010710"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2c4mthzep_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAPabcpp" metaid="_4f146b55-b8fe-46c2-9a7a-bf18896903c7" name="R_DAPabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4f146b55-b8fe-46c2-9a7a-bf18896903c7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_26dap_M_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_26dap_M_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADEtex" metaid="cbfbcfdf-22e9-4308-ac89-9194911f2982" name="adenine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cbfbcfdf-22e9-4308-ac89-9194911f2982"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ade_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ade_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDCP2pp" metaid="_9b337c50-c719-42ec-b785-3c2dfe7f7cef" name="murein_D_D_carboxypeptidase__murein5px4px4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_018620 ) OR ( XFCFBP8418_020420 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.16.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9b337c50-c719-42ec-b785-3c2dfe7f7cef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.16.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_murein5px4px4p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_murein4px4px4p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSDabcpp" metaid="db962fa4-a856-44b9-a7a1-c3b019636173" name="R_CYSDabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#db962fa4-a856-44b9-a7a1-c3b019636173"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_D_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UACMAMO" metaid="b8359d44-4150-4ea9-ac92-65b3e076b3f6" name="UDP_N_acetyl_D_mannosamine_oxidoreductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023250</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.336</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b8359d44-4150-4ea9-ac92-65b3e076b3f6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.336"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_uacmam_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_uacmamu_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA120" metaid="c1911f53-b995-4962-844e-95575d086deb" name="Phosphatidylserine_syntase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c1911f53-b995-4962-844e-95575d086deb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdddecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ps120_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHRPL" metaid="_144ecfe1-5e21-461a-b6c7-237648271450" name="Chorismate_pyruvate_lyase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011490</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.3.40</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_144ecfe1-5e21-461a-b6c7-237648271450"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.3.40"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011490"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chor_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4hbz_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PItex" metaid="_021e930c-78bd-4508-9b10-628161093fbc" name="glycero_3_phospho_1_inositol_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_021e930c-78bd-4508-9b10-628161093fbc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g3pi_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3pi_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP181abcpp" metaid="_6910f36a-f866-44ec-963f-fb627be23d8e" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C18_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6910f36a-f866-44ec-963f-fb627be23d8e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp181_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_COBALT2tex" metaid="_24ace21b-f744-4cb5-8d4e-f117f90be7c5" name="cobalt__Co_2__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_24ace21b-f744-4cb5-8d4e-f117f90be7c5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cobalt2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cobalt2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CITt3tex" metaid="_7f0702f7-9a84-4a84-8655-b46f3695f187" name="R_CITt3tex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7f0702f7-9a84-4a84-8655-b46f3695f187"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cit_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cit_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTPCII2" metaid="_0b1ee868-2ca5-41ae-9660-fd42fbfd9a53" name="GTP_cyclohydrolase_II__25drapp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001170</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.5.4.25</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0b1ee868-2ca5-41ae-9660-fd42fbfd9a53"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001170"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_25drapp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYCL" metaid="_34a00b12-a3b3-4efe-bfd8-ea0b3648edf7" name="Glycine_Cleavage_System" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003740 AND XFCFBP8418_010560 AND XFCFBP8418_015760 AND XFCFBP8418_015770</p> + <p>SUBSYSTEM: Folate_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_34a00b12-a3b3-4efe-bfd8-ea0b3648edf7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003740"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015770"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010560"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015760"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HBZOPT" metaid="_859b4d9e-d4e9-48fa-8e34-605aeb6bd094" name="Hydroxybenzoate_octaprenyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014680</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.39</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_859b4d9e-d4e9-48fa-8e34-605aeb6bd094"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.39"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_octdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4hbz_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ophb_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDCP2Bpp" metaid="_5bc3d4c2-03ca-4d63-997a-b036b8201da4" name="murein_L_D_carboxypeptidase__murein4p3p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.17.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5bc3d4c2-03ca-4d63-997a-b036b8201da4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein4p3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein3p3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSabcpp" metaid="bc9f4672-0bd3-4db4-a8de-9293b57677df" name="L_cysteine_uptake_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bc9f4672-0bd3-4db4-a8de-9293b57677df"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NITL4" metaid="_4f226009-7c46-4f5c-bc20-7d6b71729812" name="nitrilase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004900</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: 3.5.5.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4f226009-7c46-4f5c-bc20-7d6b71729812"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.5.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pheacnit_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_BIOMASS_c" metaid="_4871584b-a1fb-4f05-bb6a-81011942db8a" name="R_DM_BIOMASS_c" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4871584b-a1fb-4f05-bb6a-81011942db8a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_BIOMASS_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAPDC" metaid="_3ae6ce1a-3c5a-4f21-8cfc-bcd76f8eef8d" name="diaminopimelate_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023860</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 4.1.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3ae6ce1a-3c5a-4f21-8cfc-bcd76f8eef8d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023860"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_26dap_M_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_lys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NITL5" metaid="_1307019b-a1b1-4773-8222-16cff7d40ca3" name="nitrilase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004900</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 3.5.5.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1307019b-a1b1-4773-8222-16cff7d40ca3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.5.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_bzonit_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_bz_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SO3abcpp" metaid="faf82e1a-1d8a-4788-bd9a-b45d27c4d584" name="R_SO3abcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004070 AND XFCFBP8418_004080 AND XFCFBP8418_004090 AND XFCFBP8418_004100</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#faf82e1a-1d8a-4788-bd9a-b45d27c4d584"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004100"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004080"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_so3_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_so3_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACM6PH" metaid="_63d3f650-18a4-4ff6-9e83-d579b44b3efb" name="N_acetylmuramate_6_phosphate_hydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 4.2.1.126</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_63d3f650-18a4-4ff6-9e83-d579b44b3efb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.126"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acmum6p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acgam6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lac_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DSBCGT" metaid="_96b1c983-3e7a-4693-9742-690df645eb69" name="DsbC_glutathione_thiotransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003390</p> + <p>SUBSYSTEM: Protein_disulfide_bond_transfer</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_96b1c983-3e7a-4693-9742-690df645eb69"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dsbcox_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_gthrd_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dsbcrd_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_gthox_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NMNN" metaid="_75340bb8-4f57-4630-b302-0e410854ea1a" name="R_NMNN" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.2.2.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_75340bb8-4f57-4630-b302-0e410854ea1a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.2.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nmn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ncam_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OGMEACPD" metaid="_0882e8db-1b85-40e8-8720-84d0c41ebce8" name="3_Oxo_glutaryl__ACP__methyl_ester_dehydratase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024890</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0882e8db-1b85-40e8-8720-84d0c41ebce8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hgmeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_egmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_k_e" metaid="_1c224853-b9bd-4b91-9c12-031dc274cf2b" name="R_EX_k_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1c224853-b9bd-4b91-9c12-031dc274cf2b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_k_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG161abcpp" metaid="_4eae385e-cccb-4a2c-bee1-6769794a402c" name="phosphatidylglycerol_transport_via_ABC_system__n_C16_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4eae385e-cccb-4a2c-bee1-6769794a402c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pg161_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RBKr" metaid="_28e4dd65-346a-4793-8d21-f58e2830dc0c" name="ribokinase_reversible" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_008660</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_28e4dd65-346a-4793-8d21-f58e2830dc0c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008660"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_rib_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MICITDr" metaid="_16a96a25-935d-4afd-b4ca-b2b918509ba0" name="2_methylisocitrate_dehydratase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025910</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 4.2.1.99</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_16a96a25-935d-4afd-b4ca-b2b918509ba0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.99"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2mcacn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_micit_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT140" metaid="_76c327a0-64f3-48af-bac2-21e08135d8f0" name="1_tetradecanoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_76c327a0-64f3-48af-bac2-21e08135d8f0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_myrsACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_1tdecg3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAMAGS" metaid="_0fe35e46-cae4-4900-aab6-9b60b92b21ee" name="UDP_N_acetylmuramoyl_L_alanyl_D_glutamate_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023840</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0fe35e46-cae4-4900-aab6-9b60b92b21ee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uama_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_uamag_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRS" metaid="_9ecfd703-3f9b-405b-ac8f-39bd0e0b73d5" name="threonine_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020360</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 4.2.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9ecfd703-3f9b-405b-ac8f-39bd0e0b73d5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phom_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thr_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DKGLUCK" metaid="_606ba1b7-d299-4516-800f-23ce787b4edb" name="2_deoxy_5_keto_D_gluconic_acid_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.92</p> + </body> + </notes> + <annotation> + <rdf:RDF 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fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT141" metaid="_4d748a4a-7b65-483b-a02a-dc430687525b" name="1_tetradec_7_enoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4d748a4a-7b65-483b-a02a-dc430687525b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_1tdec7eg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN160" metaid="_690fdbee-8b0f-4df9-94bf-84e7fa117bcb" name="CDP_diacylglycerol_synthetase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.7.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_690fdbee-8b0f-4df9-94bf-84e7fa117bcb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa160_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdhdecg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN161" metaid="a97705a7-3409-4ac6-88c4-d8201067e87f" name="CDP_diacylglycerol_synthetase__n_C16_1_" reversible="false"> + <notes> + <body 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constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdhdec9eg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PMDPHT" metaid="_63c64b55-d57b-433b-b37b-8926231124e5" name="pyrimidine_phosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005170</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_63c64b55-d57b-433b-b37b-8926231124e5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + 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</body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_79f20238-a43c-4471-ba5e-19db00879552"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" 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name="murein_L_D_carboxypeptidase__murein5px4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.17.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cae4d2be-3ee7-4bb6-baa9-097d9e2efd8c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5px4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + 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rdf:resource="http://identifiers.org/ec-code/4.2.1.49"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_urcan_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4izp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HEMEOS" metaid="_05e2bd9b-e836-41a3-b965-318c66d29860" name="Heme_O_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003980</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.141</p> + </body> + </notes> + <annotation> + 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fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HCO3abcpp" metaid="fc79df28-db6d-4647-9a25-7e5d039f0e34" name="R_HCO3abcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007690</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fc79df28-db6d-4647-9a25-7e5d039f0e34"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007690"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hco3_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hco3_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACOTA" metaid="_35d3bd35-ff20-4233-ac07-f7524dd63794" name="acetylornithine_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003360</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 2.6.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_35d3bd35-ff20-4233-ac07-f7524dd63794"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acorn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acg5sa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHPS2" metaid="_0910cfff-a0d6-449d-a8a9-69d6689a0900" name="dihydropteroate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014930</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0910cfff-a0d6-449d-a8a9-69d6689a0900"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4abz_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_6hmhptpp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhpt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL100t2pp" metaid="d1eae919-daa3-4d78-a329-cb01833e7d7d" name="fatty_acid_CoA_ligase__decanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d1eae919-daa3-4d78-a329-cb01833e7d7d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dca_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dcacoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NMNtex" metaid="d126276d-34ac-45a1-8be7-c3482f615ad7" name="R_NMNtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d126276d-34ac-45a1-8be7-c3482f615ad7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nmn_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nmn_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_O2tpp" metaid="_97b68843-fbfc-462b-9b38-b960c6232da5" name="o2_transport_via_diffusion__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_97b68843-fbfc-462b-9b38-b960c6232da5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_o2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR141tipp" metaid="ffc643cc-a0d4-448a-a6ec-b441b82305be" name="R_12DGR141tipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ffc643cc-a0d4-448a-a6ec-b441b82305be"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr141_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_12dgr141_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SADT2" metaid="_5aa01bac-402d-4015-8fae-d2de0d40a3af" name="Sulfate_adenyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002680 AND XFCFBP8418_002690</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 2.7.7.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5aa01bac-402d-4015-8fae-d2de0d40a3af"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002690"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_so4_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_aps_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASP1DC" metaid="_3dad8860-fadb-4d45-b78f-ea6623501438" name="aspartate_1_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026540</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3dad8860-fadb-4d45-b78f-ea6623501438"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_B_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA141" metaid="_96d1e5e8-7505-4e20-bb88-8de38ff45115" name="Phosphatidylserine_syntase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_96d1e5e8-7505-4e20-bb88-8de38ff45115"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdtdec7eg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ps141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OGMEACPS" metaid="_035776d4-ce25-4406-adbc-5d614ecb3297" name="3_Oxo_glutaryl__ACP__methyl_ester_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017940</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_035776d4-ce25-4406-adbc-5d614ecb3297"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017940"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference 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<rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdtdecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ps140_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLCtex" metaid="_42438596-6d57-4484-8c61-7ae6ea285615" name="glucose_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_42438596-6d57-4484-8c61-7ae6ea285615"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glc_D_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glc_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CMPN" metaid="f1e94955-c06e-4682-afdf-337ba30a04b0" name="R_CMPN" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007150</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.2.2.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f1e94955-c06e-4682-afdf-337ba30a04b0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007150"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_csn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OGMEACPR" metaid="ef87a881-74aa-4665-8b74-7390b15be581" name="3_Oxo_glutaryl__ACP__methyl_ester_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ef87a881-74aa-4665-8b74-7390b15be581"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ogmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hgmeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NACODA" metaid="_3f26c8e9-8f85-4cc5-a178-ac9e0dc1c6f9" name="N_acetylornithine_deacetylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025270</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3f26c8e9-8f85-4cc5-a178-ac9e0dc1c6f9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025270"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acg5sa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu5sa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NNATr" metaid="_2adc3af3-4199-4fbf-be6c-96b4c4c930f7" name="nicotinate_nucleotide_adenylyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019740</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.7.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2adc3af3-4199-4fbf-be6c-96b4c4c930f7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019740"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nicrnt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dnad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LGTHL" metaid="fcef5802-3d5d-46f2-a6ba-453e430b6219" name="lactoylglutathione_lyase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003630</p> + <p>SUBSYSTEM: Methylglyoxal_Metabolism</p> + <p>EC_NUMBER: 4.4.1.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fcef5802-3d5d-46f2-a6ba-453e430b6219"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.4.1.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mthgxl_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_lgt_S_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_tre_e" metaid="_2b25f65c-97e2-404d-901a-2f351b852d79" name="R_EX_tre_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2b25f65c-97e2-404d-901a-2f351b852d79"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_tre_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP160pp" metaid="a1b419c0-81da-4e40-a057-a1e9407e11f6" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a1b419c0-81da-4e40-a057-a1e9407e11f6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp160_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg160_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYAT" metaid="e9dc1a75-b6d0-406f-afa0-5fbbc5757598" name="glycine_C_acetyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004000</p> + <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> + <p>EC_NUMBER: 2.3.1.29</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e9dc1a75-b6d0-406f-afa0-5fbbc5757598"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.29"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004000"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2aobut_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OPMEACPR" metaid="_38311acc-fe0e-4fe8-b291-e50c8b6cd311" name="3_Oxo_pimeloyl__ACP__methyl_ester_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_38311acc-fe0e-4fe8-b291-e50c8b6cd311"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_opmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hpmeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OPMEACPS" metaid="de252ec5-5a95-4339-95de-75bd74c748d6" name="3_Oxo_pimeloyl__ACP__methyl_ester_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#de252ec5-5a95-4339-95de-75bd74c748d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gmeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_opmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NMNt7pp" metaid="d24df04a-1053-45b4-9d5b-1b2bb443830c" name="R_NMNt7pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.2.2.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d24df04a-1053-45b4-9d5b-1b2bb443830c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.2.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nmn_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ncam_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROT_pe_LesA" metaid="_5357bd7d-8ed9-4a47-9785-f9800b06ae3a" name="R_PROT_pe_LesA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002410 AND XFCFBP8418_002430 AND XFCFBP8418_002450 AND XFCFBP8418_002490 AND XFCFBP8418_002510 AND XFCFBP8418_007090 AND XFCFBP8418_007140 AND XFCFBP8418_008580 AND XFCFBP8418_009650 AND XFCFBP8418_014460</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5357bd7d-8ed9-4a47-9785-f9800b06ae3a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002490"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002430"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008580"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002410"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007140"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009650"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014460"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002450"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="601"/> + <speciesReference constant="true" species="M_LesA_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="601"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_LesA_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="601"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="601"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THIORDXi" metaid="_0cd67b67-db31-4c16-81ee-fb0e0ac0b203" name="hydrogen_peroxide_reductase__thioredoxin_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_009690 ) OR ( XFCFBP8418_009690 AND XFCFBP8418_013260 ) OR ( XFCFBP8418_016490 ) OR ( XFCFBP8418_027830 )</p> + <p>SUBSYSTEM: Superoxide_radicals_degradation</p> + <p>EC_NUMBER: 1.11.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0cd67b67-db31-4c16-81ee-fb0e0ac0b203"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.11.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009690"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027830"/> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + </fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016490"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SLNTtpp" metaid="c6a70f8d-7458-4027-a984-349491373917" name="selenite_transport_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004070 AND XFCFBP8418_004080 AND XFCFBP8418_004090</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c6a70f8d-7458-4027-a984-349491373917"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004080"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_slnt_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_slnt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN141" metaid="d26ad3a6-bebe-42cd-9237-035ba1b3eed7" name="CDP_diacylglycerol_synthetase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.7.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d26ad3a6-bebe-42cd-9237-035ba1b3eed7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pa141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdtdec7eg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGTRS" metaid="_498f98ae-e4c7-42d3-8f54-d49e92362ece" name="Arginyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015410</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_498f98ae-e4c7-42d3-8f54-d49e92362ece"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015410"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaarg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_argtrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_gam_e" metaid="_5ff50da0-3067-4ccc-bc06-431e0e095786" name="R_EX_gam_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ff50da0-3067-4ccc-bc06-431e0e095786"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_gam_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN140" metaid="_28c0f073-5fec-4c04-8491-4d0cd1fc0982" name="CDP_diacylglycerol_synthetase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.7.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_28c0f073-5fec-4c04-8491-4d0cd1fc0982"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pa140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cdpdtdecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHNCOAT" metaid="_172f23b0-3e36-4ec7-a8f7-4877f049e313" name="R_DHNCOAT" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000310 ) OR ( XFCFBP8418_016380 ) OR ( XFCFBP8418_027720 )</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_172f23b0-3e36-4ec7-a8f7-4877f049e313"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000310"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016380"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_14dhncoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dhna_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OCDCAtexi" metaid="_83ec1012-b479-41ea-9b1c-741d6ab0c55b" name="R_OCDCAtexi" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_83ec1012-b479-41ea-9b1c-741d6ab0c55b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ocdca_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ocdca_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INOSTt2pp" metaid="_60d617c5-eb84-43d2-a135-e69aea81b345" name="myo_Inositol_transport_in_via_proton_symport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_60d617c5-eb84-43d2-a135-e69aea81b345"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_inost_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_inost_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INDOLEtex" metaid="_3d815093-2372-46d7-b732-629120c99cb7" name="R_INDOLEtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d815093-2372-46d7-b732-629120c99cb7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_indole_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_indole_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CMPA_1" metaid="_3bf975a4-4ad7-4ad8-9f6b-e7e926c264a4" name="R_CMPA_1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: 3.5.1.53</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3bf975a4-4ad7-4ad8-9f6b-e7e926c264a4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.53"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_Ncbmpts_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ptrc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TTDCAtex" metaid="f68853a7-bb81-4117-8b8a-d5b23354fe12" name="Tetradecanoate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f68853a7-bb81-4117-8b8a-d5b23354fe12"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ttdca_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ttdca_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BPNT" metaid="_0bd2463b-6ba8-4599-8cc9-37d09a118595" name="3__5__bisphosphate_nucleotidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015810</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 3.1.3.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0bd2463b-6ba8-4599-8cc9-37d09a118595"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pap_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CBPS" metaid="d26f35f6-2ec3-4773-9be0-0c2ebea9bb7e" name="carbamoyl_phosphate_synthase__glutamine_hydrolysing_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023960 AND XFCFBP8418_023970</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 6.3.5.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d26f35f6-2ec3-4773-9be0-0c2ebea9bb7e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.5.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023970"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023960"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hco3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_cbp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALCD2y" metaid="b889036a-9533-4a29-bce6-e97aa68065d0" name="alcohol_dehydrogenase__ethanol_nadp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021600</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b889036a-9533-4a29-bce6-e97aa68065d0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021600"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_etoh_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acald_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EPMEACPR" metaid="_0f96bf08-f967-48f3-93bf-7dce412104f3" name="Enoylpimeloyl__ACP__methyl_ester_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.3.1.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0f96bf08-f967-48f3-93bf-7dce412104f3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_epmeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pmeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOBDabcpp" metaid="a3c26352-4e70-49d6-bdbe-251095bf2931" name="molybdate_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004070 AND XFCFBP8418_004080 AND XFCFBP8418_004090 AND XFCFBP8418_004100</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a3c26352-4e70-49d6-bdbe-251095bf2931"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004100"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004080"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mobd_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mobd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UMPK" metaid="_843f2051-31c6-49f8-9274-c50f7feaa5f5" name="UMP_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004870 ) OR ( XFCFBP8418_024760 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_843f2051-31c6-49f8-9274-c50f7feaa5f5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004870"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024760"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_dextrin_e" metaid="_0d547eb7-32fb-4cfb-a882-4ca7f6e35a8d" name="R_EX_dextrin_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0d547eb7-32fb-4cfb-a882-4ca7f6e35a8d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_dextrin_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAPtex" metaid="_95c3d2bf-26e3-4528-b8d7-220421fe20b3" name="R_DAPtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_95c3d2bf-26e3-4528-b8d7-220421fe20b3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_26dap_M_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_26dap_M_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OPMEACPD" metaid="_5bb5cc38-4c7b-4c7b-a903-879afa6edeb4" name="3_Oxo_pimeloyl__ACP__methyl_ester_dehydratase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024890</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5bb5cc38-4c7b-4c7b-a903-879afa6edeb4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hpmeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_epmeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSr" metaid="_52a59611-b4b8-491c-8a81-77a799440f58" name="methionine_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020760</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 2.1.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_52a59611-b4b8-491c-8a81-77a799440f58"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020760"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hcys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_5mthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_F2NAPPUDC" metaid="_32a86585-5561-443d-b82a-af62daf8dd19" name="R_F2NAPPUDC" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004820</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_32a86585-5561-443d-b82a-af62daf8dd19"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udcpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpacfuc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_f2Nappudp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MPTSS" metaid="f93c4e56-1970-4ac8-9a61-bdc9fb0932a5" name="molybdopterin_synthase_sulfurylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007180</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.80</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f93c4e56-1970-4ac8-9a61-bdc9fb0932a5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.80"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_moadcoo_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_moadamp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGabcpp" metaid="_1afcd294-0571-4975-87e2-dc8f443379e6" name="L_arginine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.21</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1afcd294-0571-4975-87e2-dc8f443379e6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.21"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_arg_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2tex" metaid="_39f5e57f-2b12-494f-bd68-9ba86f019199" name="R_H2tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_39f5e57f-2b12-494f-bd68-9ba86f019199"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_2THZPSN2" metaid="cd8edc97-7777-49ff-8ec2-cdafe1b21523" name="R_2THZPSN2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002960 AND XFCFBP8418_010710 AND XFCFBP8418_011380 AND XFCFBP8418_025440</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cd8edc97-7777-49ff-8ec2-cdafe1b21523"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025440"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011380"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010710"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2c4mthzep_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTRLASE3" metaid="_134e14c8-23d7-4975-8993-627cad8b0328" name="nitrilase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004900</p> + <p>SUBSYSTEM: Nitrile_degradation</p> + <p>EC_NUMBER: 3.5.5.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_134e14c8-23d7-4975-8993-627cad8b0328"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.5.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_acybut_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUMt2_2tex" metaid="e84f88d3-ed67-4fe6-8c89-1d05d753a009" name="R_FUMt2_2tex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e84f88d3-ed67-4fe6-8c89-1d05d753a009"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fum_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fum_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTRLASE2" metaid="a994ee3a-5c18-4224-b252-d544d7721451" name="nitrilase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004900</p> + <p>SUBSYSTEM: Nitrile_degradation</p> + <p>EC_NUMBER: 3.5.5.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a994ee3a-5c18-4224-b252-d544d7721451"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.5.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_aprop_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ILETA" metaid="_4faf7029-4b9a-45ef-995a-dd6b6cd7daa0" name="isoleucine_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001240</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.42</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4faf7029-4b9a-45ef-995a-dd6b6cd7daa0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.42"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ile_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3mop_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUN" metaid="_6d5db020-42d2-4c67-b09a-71d599af89fd" name="glutaminase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026750</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: 3.5.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6d5db020-42d2-4c67-b09a-71d599af89fd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUR" metaid="ecfb0ef4-ec37-41aa-9ffd-d6a6e4f2054c" name="glutamate_racemase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ecfb0ef4-ec37-41aa-9ffd-d6a6e4f2054c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE3abcpp" metaid="d36a7413-0b8c-4b38-abc3-820c39ccf4ae" name="R_FE3abcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: 3.6.3.30</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d36a7413-0b8c-4b38-abc3-820c39ccf4ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.30"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe3_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe3_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN120" metaid="_0ba1e8dc-1e0d-4dc0-ad46-1e4fdd620792" name="CDP_diacylglycerol_synthetase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.7.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0ba1e8dc-1e0d-4dc0-ad46-1e4fdd620792"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa120_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cdpdddecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NACtpp" metaid="ae1e97f9-8617-497c-ae71-24585acd3ce5" name="R_NACtpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ae1e97f9-8617-497c-ae71-24585acd3ce5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nac_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nac_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LIPOCT" metaid="bdab0b04-e8cb-4bab-8f54-163eae6288b3" name="Lipoyl_octanoyl__transferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022350</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bdab0b04-e8cb-4bab-8f54-163eae6288b3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022350"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ocACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_octapb_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SHCHF" metaid="d4619ccf-80f9-4cad-96ea-bba4caee5f43" name="R_SHCHF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010970</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.99.1.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d4619ccf-80f9-4cad-96ea-bba4caee5f43"> + <bqbiol:is> + <rdf:Bag> + <rdf:li 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No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d2a448eb-c902-4e33-ab88-6e80ede7832f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_fe3_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ILEabcpp" metaid="_1db2a1a5-3ad1-49be-b2f5-9426939530b0" name="L_isoleucine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1db2a1a5-3ad1-49be-b2f5-9426939530b0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ile_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ile_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NADDP" metaid="_3755c964-c650-40a9-a331-572a12deb4d8" name="R_NADDP" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012090</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.6.1.22</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3755c964-c650-40a9-a331-572a12deb4d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.22"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012090"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_nmn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDCPDPS" metaid="dcba839d-2519-4cb8-9aab-1b45abfea0b7" name="Undecaprenyl_diphosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024830</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.31</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dcba839d-2519-4cb8-9aab-1b45abfea0b7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024830"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_frdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ipdp_c" stoichiometry="8"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_udcpdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="8"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NMNATr" metaid="_1536dc85-983a-4dc5-a7b2-1693baf7ee7f" name="nicotinamide_nucleotide_adenylyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019740</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1536dc85-983a-4dc5-a7b2-1693baf7ee7f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019740"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nmn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYALDtpp" metaid="_3d01642d-709a-4a12-9b8e-5c4c7b9143ec" name="R_GLYALDtpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020710</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d01642d-709a-4a12-9b8e-5c4c7b9143ec"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyald_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyald_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CS" metaid="_23d90c22-f4bc-4bde-8c29-ab8d669a9aed" name="citrate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002320</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 2.3.3.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_23d90c22-f4bc-4bde-8c29-ab8d669a9aed"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.3.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002320"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cit_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GDDMR" metaid="c8ea31f2-689b-402d-8528-16afb300f073" name="R_GDDMR" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006450</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.1.1.281</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c8ea31f2-689b-402d-8528-16afb300f073"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.281"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006450"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp6dm_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp4d6dm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ABTA" metaid="_3feec985-0dfd-47db-890f-ffdb7d9c4a21" name="R_ABTA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003360</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.6.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3feec985-0dfd-47db-890f-ffdb7d9c4a21"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4abut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sucsal_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUM" metaid="_01f69675-9e9e-403f-a07a-1fbb9a7f1344" name="fumarase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_002100 ) OR ( XFCFBP8418_016890 )</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 4.2.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01f69675-9e9e-403f-a07a-1fbb9a7f1344"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002100"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016890"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mal_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TYRTRS" metaid="_68f26176-267c-4299-8ae1-e8ed7005c387" name="tyrosyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015580</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_68f26176-267c-4299-8ae1-e8ed7005c387"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015580"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tyr_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnatyr_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tyrtrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACGAMABCt" metaid="db998b9d-c4f8-49ab-bc81-335ce9c0c4e3" name="R_ACGAMABCt" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#db998b9d-c4f8-49ab-bc81-335ce9c0c4e3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acgam_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acgam6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHPPDA2" metaid="_397adf45-3110-49b9-ae89-2c10c38bdc95" name="R_DHPPDA2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009790</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.5.4.26</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_397adf45-3110-49b9-ae89-2c10c38bdc95"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.26"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009790"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_25drapp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5apru_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADNK1" metaid="_70c5194d-2459-4c73-baaa-52095bab44ce" name="R_ADNK1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026070</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_70c5194d-2459-4c73-baaa-52095bab44ce"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS180pp" metaid="_41e3f736-7f18-4ed2-882d-078fcd073cf4" name="cardiolipin_synthase__periplasmic__n_C18_0_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_41e3f736-7f18-4ed2-882d-078fcd073cf4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pg180_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_clpn180_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP161abcpp" metaid="_6b4db725-0f46-45cd-91a7-ff5e26647473" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C16_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6b4db725-0f46-45cd-91a7-ff5e26647473"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp161_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS180" metaid="_8292c076-d98f-4659-abf8-5aea04f19a2e" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8292c076-d98f-4659-abf8-5aea04f19a2e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_palmACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3ooctdACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR4b" metaid="_1fce80bd-1ea0-4dbf-923e-87f0e18742da" name="R_RNDR4b" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013020 AND XFCFBP8418_023110 AND XFCFBP8418_023120</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1fce80bd-1ea0-4dbf-923e-87f0e18742da"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013020"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dudp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS181" metaid="f6607936-32c2-4e46-ad0a-30d824da2f35" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.179</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f6607936-32c2-4e46-ad0a-30d824da2f35"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.179"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hdeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ocvac11eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_inost_e" metaid="_0aedf89d-8a96-4cfa-92a3-6eb5f2053277" name="R_EX_inost_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0aedf89d-8a96-4cfa-92a3-6eb5f2053277"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_inost_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MAN6PI" metaid="_7dbe2ce6-db32-4f7e-bc6e-b3f2ddf43e5c" name="mannose_6_phosphate_isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026210</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 5.3.1.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7dbe2ce6-db32-4f7e-bc6e-b3f2ddf43e5c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026210"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_man6p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHAPT" metaid="_5dde2c9f-2b10-4b58-a131-233066c88570" name="R_DHAPT" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.121</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5dde2c9f-2b10-4b58-a131-233066c88570"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.121"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dha_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASADH" metaid="_5b379ec5-d580-42e2-b908-5cb20646ef45" name="R_ASADH" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003880</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 1.2.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5b379ec5-d580-42e2-b908-5cb20646ef45"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003880"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4pasp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_aspsa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MALDt2_2tex" metaid="f545ce1c-e54a-4c5b-8a49-c502345c9345" name="R_MALDt2_2tex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f545ce1c-e54a-4c5b-8a49-c502345c9345"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mal_D_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mal_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MALCOAMT" metaid="_4f14dd11-4111-46fe-b081-74f31fa49336" name="Malonyl_CoA_methyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000200 ) OR ( XFCFBP8418_001720 )</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.1.1.197</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4f14dd11-4111-46fe-b081-74f31fa49336"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.197"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000200"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_malcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ahcys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malcoame_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PGtex" metaid="_44c99b45-18a0-45ae-8d1d-c1b1c42b96c8" name="glycerophoglycerol_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_44c99b45-18a0-45ae-8d1d-c1b1c42b96c8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g3pg_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3pg_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DPR" metaid="_9a68ad4c-d4cd-4ce0-9f53-966e0013be3e" name="2_dehydropantoate_2_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017890</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.169</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a68ad4c-d4cd-4ce0-9f53-966e0013be3e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.169"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2dhp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pant_R_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLU5K" metaid="b8b1436a-57d8-458d-b9e0-94f26f27e260" name="glutamate_5_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025230</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 2.7.2.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b8b1436a-57d8-458d-b9e0-94f26f27e260"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.2.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025230"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AIRC2r" metaid="_6645cf46-919f-486a-9823-6781d9cfbbb6" name="phosphoribosylaminoimidazole_carboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013030</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 6.3.4.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6645cf46-919f-486a-9823-6781d9cfbbb6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_air_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hco3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5caiz_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ATHRDHr" metaid="_7e3a7053-fb8e-4b36-b54f-dd6fdb04058e" name="R_ATHRDHr" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015390</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.381</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7e3a7053-fb8e-4b36-b54f-dd6fdb04058e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.381"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_athr_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2aobut_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROt2rpp" metaid="_9bd00da5-d6af-4066-9645-33a888f9bbcd" name="L_proline_reversible_transport_via_proton_symport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9bd00da5-d6af-4066-9645-33a888f9bbcd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pro_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GHMT2r" metaid="da8d0d51-de92-452f-a95b-e3db2099f067" name="glycine_hydroxymethyltransferase__reversible" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> + <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> + <p>EC_NUMBER: 2.1.2.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#da8d0d51-de92-452f-a95b-e3db2099f067"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_QUIN2tpp" metaid="d71079b3-0b61-482c-80db-53375e0430ac" name="R_QUIN2tpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d71079b3-0b61-482c-80db-53375e0430ac"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_quin_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_quin_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SHSL1r" metaid="f530f847-db22-43d3-9d16-6d7eac17354a" name="R_SHSL1r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010590</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 2.5.1.48</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f530f847-db22-43d3-9d16-6d7eac17354a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.48"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_suchms_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cyst_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RBFK" metaid="_0821679d-8246-41fd-bba1-6ce3a40d8b18" name="riboflavin_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004690</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.1.26</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0821679d-8246-41fd-bba1-6ce3a40d8b18"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.26"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004690"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ribflv_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fmn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR3b" metaid="_43142d0a-9eef-49e5-b7f0-e37c0a16a8eb" name="R_RNDR3b" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013020 AND XFCFBP8418_023110 AND XFCFBP8418_023120</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_43142d0a-9eef-49e5-b7f0-e37c0a16a8eb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013020"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dcdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TMPPP" metaid="_0ec55137-23f5-4f3f-9112-d6bd2eafdea0" name="thiamine_phosphate_diphosphorylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_008540</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0ec55137-23f5-4f3f-9112-d6bd2eafdea0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2mahmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4mpetz_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thmmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DSBAO1" metaid="_5c0b1182-02bb-4720-beb4-03400b842a82" name="DsbA_protein_reoxidation_reaction__aerobic_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_003290 AND XFCFBP8418_008810 ) OR ( XFCFBP8418_003300 AND XFCFBP8418_008810 )</p> + <p>SUBSYSTEM: Protein_disulfide_bond_transfer</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5c0b1182-02bb-4720-beb4-03400b842a82"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008810"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003300"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008810"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003290"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbard_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbaox_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_4abut_e" metaid="_0a49bcd6-eff9-41d0-bd80-27d644965d83" name="R_EX_4abut_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0a49bcd6-eff9-41d0-bd80-27d644965d83"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_4abut_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FCLT" metaid="_8eb1d4bb-b1c1-44fb-81f9-ebed8b74488d" name="Ferrochelatase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006790</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.99.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8eb1d4bb-b1c1-44fb-81f9-ebed8b74488d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.99.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006790"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ppp9_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pheme_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HSK" metaid="_9940ff69-7b6c-4680-8a6c-988340fcd018" name="homoserine_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020370</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 2.7.1.39</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9940ff69-7b6c-4680-8a6c-988340fcd018"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.39"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020370"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hom_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_phom_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRAr" metaid="_76b3b033-d489-453c-bb92-fa7bfd1b43ff" name="Threonine_Aldolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 4.1.2.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_76b3b033-d489-453c-bb92-fa7bfd1b43ff"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thr_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acald_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADSL2r" metaid="dacd9565-cac8-43a7-b468-bae13439ab04" name="adenylosuccinate_lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002120</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 4.3.2.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dacd9565-cac8-43a7-b468-bae13439ab04"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.2.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002120"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_25aics_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_aicar_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PGabcpp" metaid="_44db3cb0-b678-4dc7-81ca-28d8e338ea64" name="sn_glycerol_3_phosphoglycerol_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_44db3cb0-b678-4dc7-81ca-28d8e338ea64"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3pg_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3pg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_O16A4COLIPAabctex" metaid="b12703fa-9481-407c-82ac-92105fd00866" name="R_O16A4COLIPAabctex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003500 AND XFCFBP8418_003510 AND XFCFBP8418_015320 AND XFCFBP8418_015330</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b12703fa-9481-407c-82ac-92105fd00866"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015320"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_OLPS_XF_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_OLPS_XF_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUtex" metaid="cc285548-4649-4d25-9a09-e6c71c2f1135" name="L_glutamate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cc285548-4649-4d25-9a09-e6c71c2f1135"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROT_cp_LesA" metaid="c7216a2f-75d2-418a-8595-9227e9080418" name="R_PROT_cp_LesA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002410 AND XFCFBP8418_002430 AND XFCFBP8418_002450 AND XFCFBP8418_002490 AND XFCFBP8418_002510 AND XFCFBP8418_007090 AND XFCFBP8418_007140 AND XFCFBP8418_008580 AND XFCFBP8418_009650 AND XFCFBP8418_014460</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c7216a2f-75d2-418a-8595-9227e9080418"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002490"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002430"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008580"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002410"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007140"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009650"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014460"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002450"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="601"/> + <speciesReference constant="true" species="M_LesA_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="601"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_c" stoichiometry="601"/> + <speciesReference constant="true" species="M_LesA_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="601"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR2b" metaid="_6e54d580-b45a-4013-a358-079027932d74" name="R_RNDR2b" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013020 AND XFCFBP8418_023110 AND XFCFBP8418_023120</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6e54d580-b45a-4013-a358-079027932d74"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013020"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dgdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_pyr_e" metaid="_8633901e-e762-4406-8ebb-b58c3f6c6f92" name="R_EX_pyr_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8633901e-e762-4406-8ebb-b58c3f6c6f92"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS160" metaid="a3fabda9-649f-4736-b7fa-28241c5853c0" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a3fabda9-649f-4736-b7fa-28241c5853c0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_myrsACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3opalmACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DSERDHr" metaid="_59ad4187-4ef2-4171-90b9-234bbc54fcee" name="R_DSERDHr" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015390</p> + <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.276</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_59ad4187-4ef2-4171-90b9-234bbc54fcee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.276"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2amsa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS161" metaid="d9fd717c-9da8-4cd7-b257-1e48b23ee048" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d9fd717c-9da8-4cd7-b257-1e48b23ee048"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3ocpalm9eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRATPP" metaid="_7bab06b3-5f10-46bc-8921-b52ca4efaa68" name="phosphoribosyl_ATP_pyrophosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020260</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 3.6.1.31</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7bab06b3-5f10-46bc-8921-b52ca4efaa68"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020260"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prbatp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prbamp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_URAt2pp" metaid="c689780f-6291-4a49-8606-befea4ef9449" name="R_URAt2pp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c689780f-6291-4a49-8606-befea4ef9449"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ura_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ura_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GP4GH" metaid="_537a438f-16d9-4cc6-9519-85c84364ff69" name="Gp4G_hydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019500</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_537a438f-16d9-4cc6-9519-85c84364ff69"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019500"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gp4g_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPK2r" metaid="_0bae4037-a747-4a55-97f0-2d9c35812403" name="polyphosphate_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012370</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 2.7.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0bae4037-a747-4a55-97f0-2d9c35812403"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012370"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAPE" metaid="_29a03fd9-aefc-4f79-b029-e69b46c520e5" name="diaminopimelate_epimerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002870</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 5.1.1.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_29a03fd9-aefc-4f79-b029-e69b46c520e5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_26dap_LL_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_26dap_M_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OAAtex" metaid="b07ccf1c-e5f0-4e1a-aec2-8e9ad696935f" name="R_OAAtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b07ccf1c-e5f0-4e1a-aec2-8e9ad696935f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_oaa_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_oaa_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ORPT" metaid="f9ef6e07-c2be-48b1-a3a1-3bf83ffd1efd" name="orotate_phosphoribosyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015470</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 2.4.2.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f9ef6e07-c2be-48b1-a3a1-3bf83ffd1efd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015470"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_orot5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_orot_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROtex" metaid="_9d708f07-47a2-4900-8f78-559008fb3911" name="L_proline_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9d708f07-47a2-4900-8f78-559008fb3911"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pro_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pro_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE120abcpp" metaid="_3a7b34bd-9273-4389-9723-727fa652ce82" name="phosphatidylethanolamine_transport_via_ABC_system__n_C12_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3a7b34bd-9273-4389-9723-727fa652ce82"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe120_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe120_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP180pp" metaid="c35596c4-e315-4b33-a091-de5a0f92068b" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c35596c4-e315-4b33-a091-de5a0f92068b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp180_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg180_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_mobd_e" metaid="_20930448-937b-4cf1-ab3f-ecc08d62f091" name="R_EX_mobd_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_20930448-937b-4cf1-ab3f-ecc08d62f091"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_mobd_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR1b" metaid="b9cad4e8-4536-4eec-8c2e-6d989419fe0e" name="R_RNDR1b" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013020 AND XFCFBP8418_023110 AND XFCFBP8418_023120</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b9cad4e8-4536-4eec-8c2e-6d989419fe0e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013020"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UPPDC1" metaid="bbf72941-8f9c-476d-88dc-ce5e8f3cc3f2" name="uroporphyrinogen_decarboxylase__uroporphyrinogen_III_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004180</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.1.37</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bbf72941-8f9c-476d-88dc-ce5e8f3cc3f2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.37"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uppg3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="4"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cpppg3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="4"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PYRt2rpp" metaid="_67a005e1-64b1-49b1-a087-618c55348f69" name="pyruvate_reversible_transport_via_proton_symport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_67a005e1-64b1-49b1-a087-618c55348f69"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_T2DECAI" metaid="_5f6dd7c4-e043-4833-ae2f-ccd001b942a8" name="trans_2_decenoyl_ACP_isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006750</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f6dd7c4-e043-4833-ae2f-ccd001b942a8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tdec2eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cdec3eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADSL1r" metaid="c79adf30-efb3-4c5b-ab16-e56fe3a29df1" name="adenylsuccinate_lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002120</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 4.3.2.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c79adf30-efb3-4c5b-ab16-e56fe3a29df1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.2.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002120"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dcamp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHNPA2" metaid="_9e213471-7d57-43b4-ad83-a49b7090064d" name="dihydroneopterin_aldolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007450</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.2.25</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9e213471-7d57-43b4-ad83-a49b7090064d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007450"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhnpt_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_6hmhpt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gcald_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OMMBLHX" metaid="b915eb59-4fc6-4502-ab13-9ac3eb413803" name="2_Octaprenyl_3_methyl_6_methoxy_1_4_benzoquinol_hydroxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010940</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b915eb59-4fc6-4502-ab13-9ac3eb413803"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010940"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2ommbl_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="0.5"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2omhmbl_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSSADS" metaid="_9d0218c9-f286-40a8-b0ed-f09b4a88786a" name="R_CYSSADS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002960</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 4.1.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9d0218c9-f286-40a8-b0ed-f09b4a88786a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3sala_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_so2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MEOHtex" metaid="f8f0a2d0-bbae-4aa8-9861-728f3528ccc0" name="Methanol_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f8f0a2d0-bbae-4aa8-9861-728f3528ccc0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_meoh_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_meoh_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MG2tpp" metaid="_468c5216-dda7-4ea0-a1be-6d9beafa5192" name="magnesium___2__transport_in_via_diffusion" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010210</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_468c5216-dda7-4ea0-a1be-6d9beafa5192"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010210"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mg2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mg2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE140abcpp" metaid="_1c8a405f-6f2b-4349-89a5-74b3a30b1631" name="phosphatidylethanolamine_transport_via_ABC_system__n_C14_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1c8a405f-6f2b-4349-89a5-74b3a30b1631"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe140_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HISTRS" metaid="cf58a71b-ee9b-4e1d-b6bf-7b0e5b537f32" name="Histidyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020350</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.21</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cf58a71b-ee9b-4e1d-b6bf-7b0e5b537f32"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.21"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020350"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnahis_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_his_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_histrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGDCpp" metaid="e5dcc1c1-e648-428d-86dd-7d5bb7df0e6e" name="R_ARGDCpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015380</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 4.1.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e5dcc1c1-e648-428d-86dd-7d5bb7df0e6e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015380"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_arg_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_agm_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS140" metaid="f9183968-aad1-4479-871e-85f5ddcce669" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f9183968-aad1-4479-871e-85f5ddcce669"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ddcaACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3omrsACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OPHHX" metaid="_3f44626a-4910-45ac-86fa-da92802e5d01" name="2_Octaprenylphenol_hydroxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017800</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3f44626a-4910-45ac-86fa-da92802e5d01"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2oph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="0.5"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2ohph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS141" metaid="_0ec69bdf-88ce-465f-9218-2538ee9ad8d1" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0ec69bdf-88ce-465f-9218-2538ee9ad8d1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cddec5eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ocmrs7eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR180x" metaid="_3bfc5d63-2c65-4b18-acba-50fc84cb20b6" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3bfc5d63-2c65-4b18-acba-50fc84cb20b6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_toctd2eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ocdcaACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KDOCT2" metaid="_3d706d9f-080e-4204-ae23-70f909a44e8b" name="3_deoxy_manno_octulosonate_cytidylyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019240</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.38</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d706d9f-080e-4204-ae23-70f909a44e8b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.38"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ckdo_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR2" metaid="_79aeb888-3830-43ed-9cc4-cc33e236b38e" name="ribonucleoside_diphosphate_reductase__GDP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_023110 AND XFCFBP8418_023120 ) OR ( XFCFBP8418_013260 AND XFCFBP8418_023110 AND XFCFBP8418_023120 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_79aeb888-3830-43ed-9cc4-cc33e236b38e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dgdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR1" metaid="b3219740-d050-4774-a42b-f624af5ded79" name="ribonucleoside_diphosphate_reductase__ADP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_023110 AND XFCFBP8418_023120 ) OR ( XFCFBP8418_013260 AND XFCFBP8418_023110 AND XFCFBP8418_023120 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b3219740-d050-4774-a42b-f624af5ded79"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FMETTRS" metaid="a2feb2dc-03c1-4e58-b8cc-f958156cc5ef" name="Methionyl_tRNA_formyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009950</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 2.1.2.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a2feb2dc-03c1-4e58-b8cc-f958156cc5ef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mettrna_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_10fthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fmettrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SPODM" metaid="_044de510-3507-4d74-8e62-1e1e87019bd4" name="superoxide_dismutase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012590</p> + <p>SUBSYSTEM: Superoxide_radicals_degradation</p> + <p>EC_NUMBER: 1.15.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_044de510-3507-4d74-8e62-1e1e87019bd4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.15.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_o2s_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD11" metaid="_6e7c9853-0f50-49ff-8fbb-bb6eb66501fe" name="5__nucleotidase__IMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6e7c9853-0f50-49ff-8fbb-bb6eb66501fe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ins_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD10" metaid="e4bb43b8-b699-46df-9320-8e53cae7b56f" name="5__nucleotidase__XMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e4bb43b8-b699-46df-9320-8e53cae7b56f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_xtsn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR4" metaid="_896b0e63-5634-4dcf-9958-674ac77696c7" name="ribonucleoside_diphosphate_reductase__UDP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_023110 AND XFCFBP8418_023120 ) OR ( XFCFBP8418_013260 AND XFCFBP8418_023110 AND XFCFBP8418_023120 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_896b0e63-5634-4dcf-9958-674ac77696c7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dudp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR3" metaid="cd2264e5-2cbb-4db6-ad9d-c07c43bcd14e" name="ribonucleoside_diphosphate_reductase__CDP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_023110 AND XFCFBP8418_023120 ) OR ( XFCFBP8418_013260 AND XFCFBP8418_023110 AND XFCFBP8418_023120 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cd2264e5-2cbb-4db6-ad9d-c07c43bcd14e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dcdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD12" metaid="_5d330281-1b50-41c2-bc1c-73ce1a42e5e7" name="5__nucleotidase__dIMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5d330281-1b50-41c2-bc1c-73ce1a42e5e7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dimp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_din_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAAGDS" metaid="_03a62112-53cb-40a6-a5e6-9c48a58b81f1" name="UDP_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimelate_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011300</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_03a62112-53cb-40a6-a5e6-9c48a58b81f1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011300"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uamag_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_26dap_M_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ugmd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDEP3pp" metaid="_48f0e7d9-7db2-4279-8c7e-bf92bf1db331" name="murein_D_D_endopeptidase__murein5px4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_48f0e7d9-7db2-4279-8c7e-bf92bf1db331"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5px4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein5p4p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NH4tex" metaid="_248b94d3-106d-4470-8cca-3f6f228bbc8a" name="ammonia_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_248b94d3-106d-4470-8cca-3f6f228bbc8a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nh4_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD121" metaid="_1d7ccf88-33dd-446c-bcea-f99ba152f541" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C12_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1d7ccf88-33dd-446c-bcea-f99ba152f541"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hcddec5eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_t3c5ddeceACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD120" metaid="_22084632-d9f6-40cb-b58f-2e5f42d8c8ad" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_22084632-d9f6-40cb-b58f-2e5f42d8c8ad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hddecACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tddec2eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_COBALT2tpp" metaid="_71a1ba76-5e3a-4113-a1dc-f3d98c0bbe94" name="cobalt_transport_in_via_permease__no_H__" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010210</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_71a1ba76-5e3a-4113-a1dc-f3d98c0bbe94"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010210"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cobalt2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cobalt2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OROTt2_2pp" metaid="_9b8a138c-ca3d-4dcd-b4a2-4e283339ac74" name="Orotate_transport_via_proton_symport__2_H___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025480</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9b8a138c-ca3d-4dcd-b4a2-4e283339ac74"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_orot_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_orot_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MN2t3pp" metaid="_31e36b04-fa1f-40e4-9738-d89a6765dd6b" name="manganese__Mn_2__transport_out_via_proton_antiport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010570</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_31e36b04-fa1f-40e4-9738-d89a6765dd6b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mn2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mn2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NADK" metaid="cd65e5b8-65f7-46b4-8e78-3659cbd30a6a" name="NAD_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_027970</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.9.23</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cd65e5b8-65f7-46b4-8e78-3659cbd30a6a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.9.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027970"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METDtex" metaid="_4238a353-d6cb-4a6c-a9ac-5f3e78809b5e" name="R_METDtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4238a353-d6cb-4a6c-a9ac-5f3e78809b5e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_met_D_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_met_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALATA_D2" metaid="_0a5e00e9-af40-4141-80c6-64e6817c3fbf" name="D_alanine_transaminase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0a5e00e9-af40-4141-80c6-64e6817c3fbf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pydx5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyam5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EPSsynthXF" metaid="_79e373ae-ac1a-4360-8bcb-89a7d0543645" name="R_EPSsynthXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021400 AND XFCFBP8418_021410 AND XFCFBP8418_021440 AND XFCFBP8418_021450 AND XFCFBP8418_021460</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_79e373ae-ac1a-4360-8bcb-89a7d0543645"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021410"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021400"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021450"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021460"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021440"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udpgalur_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpg_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_gdpmann_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_EPS_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ORNTA" metaid="d5102a3c-3a3c-434a-94d0-8b96be75b928" name="ornithine_transaminase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003360</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: 2.6.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d5102a3c-3a3c-434a-94d0-8b96be75b928"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_orn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu5sa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PMANM" metaid="e7613bec-6717-43e5-9a04-e731c28b552d" name="phosphomannomutase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026200</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 5.4.2.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e7613bec-6717-43e5-9a04-e731c28b552d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.2.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026200"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_man1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_man6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SDPTA" metaid="c1b371a7-cf60-4264-b23e-ed786ad87c66" name="succinyldiaminopimelate_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003360</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c1b371a7-cf60-4264-b23e-ed786ad87c66"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sl26da_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sl2a6o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MANptspp" metaid="f6e61095-8bae-4dd9-977a-512e79a6565e" name="R_MANptspp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f6e61095-8bae-4dd9-977a-512e79a6565e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_man_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_man6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALAt2tex" metaid="_96deabb3-b15e-44dc-9b44-fe6777fd975d" name="R_ALAt2tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_96deabb3-b15e-44dc-9b44-fe6777fd975d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR181x" metaid="_8bccbcf3-e7bf-473f-ae20-36fee6e62c8f" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8bccbcf3-e7bf-473f-ae20-36fee6e62c8f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_t3c11vaceACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_octeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSTS" metaid="_61b6ac42-738f-4dbc-a0de-595026000983" name="R_CYSTS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006490</p> + <p>SUBSYSTEM: Cystein_Metabolism</p> + <p>EC_NUMBER: 4.2.1.22</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_61b6ac42-738f-4dbc-a0de-595026000983"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.22"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006490"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hcys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cyst_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM4PCPpp" metaid="_2b90323d-3699-41a8-8135-de16322f7fe3" name="R_AGM4PCPpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: 3.4.17.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2b90323d-3699-41a8-8135-de16322f7fe3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhgm3p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP141abcpp" metaid="e4cac7b1-addf-4094-86dd-5626f799b1e7" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C14_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e4cac7b1-addf-4094-86dd-5626f799b1e7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp141_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MCOATA" metaid="_34b4986a-38cf-4f0e-b0ff-ac946164acd4" name="Malonyl_CoA_ACP_transacylase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_005920</p> + <p>SUBSYSTEM: Membrane_Lipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.39</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_34b4986a-38cf-4f0e-b0ff-ac946164acd4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.39"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005920"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_malcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRMICI" metaid="_4a139dd6-6b1f-42a3-80fa-c1a652f92f40" name="1__5_phosphoribosyl__5___5_phosphoribosylamino_methylideneamino_imidazole_4_carboxamide_isomerase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020280</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 5.3.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4a139dd6-6b1f-42a3-80fa-c1a652f92f40"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020280"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_prfp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_prlp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRFGS" metaid="ae9884a2-12e6-45c1-a0b3-eb9c374952fe" name="phosphoribosylformylglycinamidine_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003400</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 6.3.5.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ae9884a2-12e6-45c1-a0b3-eb9c374952fe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.5.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003400"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fgam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fpram_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UBQBM" metaid="f9dec702-3dc6-451a-aba0-3f7b5574765e" name="ubiquinone_biosynthesis_monooxygenase_Coq7" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002280</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.14.13.-</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f9dec702-3dc6-451a-aba0-3f7b5574765e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.14.13.-"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002280"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2hpmhobq_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2hp6mobq_me_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHQD" metaid="_79202ee9-17eb-4a25-8b3d-0aba67bfb05b" name="3_dehydroquinate_dehydratase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014540</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_79202ee9-17eb-4a25-8b3d-0aba67bfb05b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3dhq_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3dhsk_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDPGDC" metaid="_714296ef-25a8-4a7e-8a7d-9b785ef36d1b" name="R_UDPGDC" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006440</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.305</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_714296ef-25a8-4a7e-8a7d-9b785ef36d1b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.305"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006440"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpglcur_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpLa4o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALAR" metaid="f41507bb-f146-4e38-a834-64dc68ceed40" name="alanine_racemase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010700</p> + <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> + <p>EC_NUMBER: 5.1.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f41507bb-f146-4e38-a834-64dc68ceed40"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010700"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDCPPtppi" metaid="_43042d06-07b1-4ee3-9e5a-e3da8c996d33" name="undecaprenyl_phosphate_transport__cytoplasm_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_43042d06-07b1-4ee3-9e5a-e3da8c996d33"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udcpp_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_udcpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP2" metaid="_00f0b404-4433-4991-b1ea-6ba5460196bd" name="R_NTPP2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_015800 ) OR ( XFCFBP8418_023820 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_00f0b404-4433-4991-b1ea-6ba5460196bd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023820"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP1" metaid="_6404b198-63b5-426c-a670-f1f20da40309" name="R_NTPP1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_015800 ) OR ( XFCFBP8418_023820 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6404b198-63b5-426c-a670-f1f20da40309"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023820"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dgtp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dgmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHTNDA2" metaid="_1f4c0b90-0cb9-448e-ba07-43b65152c5a9" name="R_CHTNDA2" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021670</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.5.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1f4c0b90-0cb9-448e-ba07-43b65152c5a9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021670"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chtbs_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_ac_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_chitos_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPTRS" metaid="cece8e95-5d53-4e5d-b26e-419e911c3979" name="Aspartyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_016880</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cece8e95-5d53-4e5d-b26e-419e911c3979"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016880"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaasp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_asptrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_glc_D_e" metaid="d8bc6d91-13e2-422c-ad0b-731ac272e030" name="R_EX_glc_D_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d8bc6d91-13e2-422c-ad0b-731ac272e030"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_glc_D_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRAI" metaid="_0b7be11a-f50b-43a9-88c3-8f0bf41f3c55" name="phosphoribosylanthranilate_isomerase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026720</p> + <p>SUBSYSTEM: Tyrosine__tryptophan__and_phenylalanine_metabolism</p> + <p>EC_NUMBER: 5.3.1.24</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0b7be11a-f50b-43a9-88c3-8f0bf41f3c55"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.24"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026720"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pran_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2cpr5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MSO3abcpp" metaid="_677c2f8c-7961-4be8-b1d7-5a0b60fb21a8" name="methanesulfonate_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007680 ) OR ( XFCFBP8418_009840 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_677c2f8c-7961-4be8-b1d7-5a0b60fb21a8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009840"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mso3_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mso3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHQS" metaid="c8451369-a3cb-451c-a1ab-747dc7433c89" name="3_dehydroquinate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004170</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.2.3.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c8451369-a3cb-451c-a1ab-747dc7433c89"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.3.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004170"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2dda7p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3dhq_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE140" metaid="cfb3384a-9b94-4fd2-ba77-9cd1ab312909" name="R_FACOAE140" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cfb3384a-9b94-4fd2-ba77-9cd1ab312909"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tdcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ttdca_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_5DGLCNR" metaid="_8e3baeca-0b92-41fd-98d5-bf72e1a03b07" name="5_dehydro_D_gluconate_reductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.1.1.69</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8e3baeca-0b92-41fd-98d5-bf72e1a03b07"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.69"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5dglcn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glcn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE141" metaid="_9af9b25b-0657-4114-b578-efca4a85f6a7" name="R_FACOAE141" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9af9b25b-0657-4114-b578-efca4a85f6a7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdecoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ttdcea_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NAMNPP" metaid="_829a24cf-0b33-4fb2-af68-514ec3e938ae" name="R_NAMNPP" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024030</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.4.21</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_829a24cf-0b33-4fb2-af68-514ec3e938ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.21"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nicrnt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GDPTPDP" metaid="_01138718-ee8e-47e9-b1f4-f8562732613d" name="guanosine_3_diphosphate_5_triphosphate_3_diphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_008750</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.1.7.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01138718-ee8e-47e9-b1f4-f8562732613d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.7.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdptp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD100" metaid="d9b5e3b1-62f4-42c4-867c-c89d6e183f6b" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C10_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d9b5e3b1-62f4-42c4-867c-c89d6e183f6b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hdecACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_tdec2eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_COLIPAabcpp" metaid="_4af05ec1-1bed-4aba-a2cb-d0dbf9ec9c36" name="core_oligosaccharide_lipid_A_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4af05ec1-1bed-4aba-a2cb-d0dbf9ec9c36"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_core_kdo2lip6_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_core_kdo2lip6_XF_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL161t2pp" metaid="a06a1dff-b332-4665-882d-c20f8bafdd8f" name="fatty_acid_CoA_ligase__hexadecenoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a06a1dff-b332-4665-882d-c20f8bafdd8f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hdcea_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hdcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RIBtex" metaid="_4ddf94c1-6b92-40b8-aa6a-bdd0d4400dc5" name="R_RIBtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4ddf94c1-6b92-40b8-aa6a-bdd0d4400dc5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_rib_D_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_rib_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_gln_L_e" metaid="_597c5adc-db49-44d2-94f1-b67ad04a0da4" name="R_EX_gln_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_597c5adc-db49-44d2-94f1-b67ad04a0da4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_gln_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OTOTt2_2tex" metaid="a210e18a-5994-4374-94bd-72287fee0ca0" name="R_OTOTt2_2tex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a210e18a-5994-4374-94bd-72287fee0ca0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_orot_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_orot_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_ADE" metaid="b3e3b004-8105-4516-a6e1-7f94dcafe766" name="R_DM_ADE" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b3e3b004-8105-4516-a6e1-7f94dcafe766"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ade_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OMPDC" metaid="d93dc4e1-edfc-4c32-85ab-7653f4ed523a" name="orotidine_5__phosphate_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014470</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 4.1.1.23</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d93dc4e1-edfc-4c32-85ab-7653f4ed523a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014470"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_orot5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CCGS" metaid="aeefd093-9780-4f3a-a4bc-c4b1b159b5ce" name="7_cyano_7_carbaguanine_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_016870</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.4.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#aeefd093-9780-4f3a-a4bc-c4b1b159b5ce"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_preq0_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TSULtex" metaid="ec927e32-cf1d-4c73-918a-72f5029322db" name="thiosulfate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ec927e32-cf1d-4c73-918a-72f5029322db"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tsul_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_tsul_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DATPHs" metaid="_2b1cac90-06fb-4bc4-b049-4dd1f620efa8" name="R_DATPHs" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2b1cac90-06fb-4bc4-b049-4dd1f620efa8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_datp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ditp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PTRCt2pp" metaid="e78db6cd-0657-4fea-8f01-81c6ec2b22c9" name="putrescine_transport_in_via_proton_symport" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_020210 ) OR ( XFCFBP8418_020220 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e78db6cd-0657-4fea-8f01-81c6ec2b22c9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020210"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020220"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ptrc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ptrc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACMAMUT" metaid="e95f5e68-9ab6-4458-a480-f20dfe2db6e7" name="R_ACMAMUT" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021400</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.4.1.180</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e95f5e68-9ab6-4458-a480-f20dfe2db6e7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.1.180"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021400"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_unaga_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uacmamu_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_unagamu_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EGMEACPR" metaid="_67a233e0-d4ee-4dc9-942d-b1e17c4c40db" name="Enoylglutaryl__ACP__methyl_ester_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.3.1.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_67a233e0-d4ee-4dc9-942d-b1e17c4c40db"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_egmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gmeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOXR2" metaid="_96cc1688-4359-4703-84b6-1435cb691796" name="L_methionine_R_sulfoxide_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010720 AND XFCFBP8418_013260</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 1.8.4.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_96cc1688-4359-4703-84b6-1435cb691796"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.4.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_metsox_R_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOXR1" metaid="_5df23b30-a3f6-4676-921e-54191df808b1" name="L_methionine_S_oxide_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000660 AND XFCFBP8418_013260</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 1.8.4.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5df23b30-a3f6-4676-921e-54191df808b1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.4.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000660"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_metsox_S_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EPStppXF" metaid="_5fb48694-ac9e-4ed6-b99d-173ee6449183" name="R_EPStppXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021420 AND XFCFBP8418_021460 AND XFCFBP8418_021480</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5fb48694-ac9e-4ed6-b99d-173ee6449183"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021480"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021460"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_EPS_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_EPS_XF_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KDOPS" metaid="fafc6c96-1fa9-43ae-9ec8-ef503665762a" name="3_deoxy__D_manno_octulosonic__acid_8_phosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022230</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.55</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fafc6c96-1fa9-43ae-9ec8-ef503665762a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.55"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022230"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ara5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_kdo8p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLTGY3pp" metaid="_8c2d34c8-0575-45ca-9afa-b2bb6aa92508" name="murein_lytic_transglycosylase__murein3p3p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_003940 ) OR ( XFCFBP8418_019770 )</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8c2d34c8-0575-45ca-9afa-b2bb6aa92508"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019770"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein3p3p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm3p_p" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_cit_e" metaid="_4102b033-7400-4144-a90c-dd4e3e8e846d" name="R_EX_cit_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4102b033-7400-4144-a90c-dd4e3e8e846d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_cit_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KDOPP" metaid="_3232385a-d5de-435f-91cd-5bc3226f132f" name="3_deoxy_manno_octulosonate_8_phosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003480</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.3.45</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3232385a-d5de-435f-91cd-5bc3226f132f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.45"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo8p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_kdo_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INS2D" metaid="_23902905-3c66-4f67-8f44-a07f6f2b556d" name="inositol_2_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.1.1.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_23902905-3c66-4f67-8f44-a07f6f2b556d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_inost_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2ins_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR160x" metaid="fb6781bf-f459-4e4d-9c02-b1ab55166450" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fb6781bf-f459-4e4d-9c02-b1ab55166450"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tpalm2eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_palmACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUMt2_2pp" metaid="_9bfdf378-c0f2-4e54-baac-18954903679e" name="Fumarate_transport_via_proton_symport__2_H___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025480</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9bfdf378-c0f2-4e54-baac-18954903679e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fum_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTRLASE" metaid="_100a3131-464c-4fe3-8fbc-96b217be9163" name="nitrilase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004900</p> + <p>SUBSYSTEM: Nitrile_degradation</p> + <p>EC_NUMBER: 3.5.5.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_100a3131-464c-4fe3-8fbc-96b217be9163"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.5.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_ind3acnl_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ind3ac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Bztpp" metaid="_285c7944-ea46-46e8-a16c-61123969b4dc" name="R_Bztpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_285c7944-ea46-46e8-a16c-61123969b4dc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_bz_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_bz_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS60" metaid="_34b80282-f769-4dfd-ba18-8049c74ec799" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C6_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_34b80282-f769-4dfd-ba18-8049c74ec799"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_butACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ohexACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE160" metaid="_72efae78-afaa-4b0f-9a5f-547547ffbf40" name="R_FACOAE160" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_72efae78-afaa-4b0f-9a5f-547547ffbf40"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pmtcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hdca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ATPM" metaid="_4185d916-7cbb-46e0-adea-86c5eacb2919" name="R_ATPM" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Biomass_and_maintenance_functions</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description 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name="L_methionine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010500 AND XFCFBP8418_010510 AND XFCFBP8418_010520</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_00d49cea-7b15-48c0-bf8b-d807fb1545ac"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010520"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CA2tpp" metaid="_8a8e45aa-9098-4c26-a506-006e63380941" name="R_CA2tpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8a8e45aa-9098-4c26-a506-006e63380941"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ca2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ca2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE161" metaid="_366b4b50-2bdd-4dbf-95b4-4182b08ec755" name="R_FACOAE161" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_366b4b50-2bdd-4dbf-95b4-4182b08ec755"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hdcoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hdcea_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ME2" metaid="e38276c1-2ba0-4f9f-a4c3-3f01ca1a8cc3" name="malic_enzyme__NADP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025470</p> + <p>SUBSYSTEM: Anaplerotic_Reactions</p> + <p>EC_NUMBER: 1.1.1.40</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e38276c1-2ba0-4f9f-a4c3-3f01ca1a8cc3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.40"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025470"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mal_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SERabcpp" metaid="_9dd1c7b0-5fe9-488f-895a-52c4f7706186" name="R_SERabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9dd1c7b0-5fe9-488f-895a-52c4f7706186"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHAD2" metaid="b47e0de9-8e54-4c25-9acb-8fa599657aa4" name="Dihydroxy_acid_dehydratase__2_3_dihydroxy_3_methylpentanoate_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014980</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b47e0de9-8e54-4c25-9acb-8fa599657aa4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014980"/> + 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constant="true" species="M_rbflvrd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHAD1" metaid="_77cebed7-605b-47bd-a764-4b13caba5e3c" name="dihydroxy_acid_dehydratase__2_3_dihydroxy_3_methylbutanoate_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014980</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_77cebed7-605b-47bd-a764-4b13caba5e3c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014980"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_23dhmb_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3mob_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NADS2" metaid="_99c270f2-750c-4259-b953-d14e2c9425e3" name="NAD_synthase__glutamine_hydrolysing_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000890</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.5.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_99c270f2-750c-4259-b953-d14e2c9425e3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.5.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dnad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SPS" metaid="_51b0db8a-aa4b-4a35-a77b-266a4ff17bfe" name="R_SPS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010390</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.4.1.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_51b0db8a-aa4b-4a35-a77b-266a4ff17bfe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.1.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_suc6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SEAHCYSHYD" metaid="_1c78443e-bf0c-4b1f-a8cb-2c48272a0288" name="Se_Adenosylselenohomocysteine_hydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024950</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.3.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1c78443e-bf0c-4b1f-a8cb-2c48272a0288"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.3.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_seahcys_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_selhcys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_U23GAATXF" metaid="_5ed5820f-384c-4032-a184-2e2bb929b8b9" name="R_U23GAATXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024880</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.191</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ed5820f-384c-4032-a184-2e2bb929b8b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.191"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024880"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hddecACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_u3hga_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_u23ga_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDH" metaid="e8b66e0a-dc88-46b6-b724-c95e46904c14" name="malate_dehydrogenase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023000</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 1.1.1.37</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e8b66e0a-dc88-46b6-b724-c95e46904c14"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.37"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023000"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mal_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDSKXF" metaid="e05c0ff9-f3ee-44e4-ae6c-5a8af1fcdd02" name="R_TDSKXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024520</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.7.1.130</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e05c0ff9-f3ee-44e4-ae6c-5a8af1fcdd02"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.130"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024520"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_lipidAds_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lipidA_XF_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DPCOAK" metaid="_72098093-e1d9-4f34-a7c1-7fa433fa2788" name="dephospho_CoA_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011870</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.1.24</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_72098093-e1d9-4f34-a7c1-7fa433fa2788"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.24"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dpcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLTN2pp" metaid="_3a2cf021-2280-4af5-845b-33197249f1e9" name="gluconolactonase__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022170</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.1.1.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3a2cf021-2280-4af5-845b-33197249f1e9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.1.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022170"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g15l_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glcn_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRabcpp" metaid="d6621e0d-c54a-4e88-9392-506216b82986" name="R_THRabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d6621e0d-c54a-4e88-9392-506216b82986"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thr_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thr_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYC2Pabcpp" metaid="d2c55c67-7451-45ff-b341-7488e1a4909a" name="sn_Glycerol_2_phosphate_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d2c55c67-7451-45ff-b341-7488e1a4909a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc2p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc2p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSSr2" metaid="_36a33785-355e-44d9-b292-1c881970cfcb" name="R_CYSSr2" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006490 ) OR ( XFCFBP8418_010590 ) OR ( XFCFBP8418_010980 )</p> + <p>SUBSYSTEM: Cystein_Metabolism</p> + <p>EC_NUMBER: 2.5.1.47</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_36a33785-355e-44d9-b292-1c881970cfcb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.47"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010590"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010980"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006490"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acser_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPA2" metaid="_7faf16e3-0feb-400d-8cdd-1c9c8f111457" name="inorganic_triphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_010630 ) OR ( XFCFBP8418_012360 )</p> + <p>SUBSYSTEM: Anaplerotic_Reactions</p> + <p>EC_NUMBER: 3.6.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7faf16e3-0feb-400d-8cdd-1c9c8f111457"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012360"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pppi_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_COLIPAabctex" metaid="_02c0cfcc-783a-4ca4-8d3e-31820d1f8dd9" name="R_COLIPAabctex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003500 AND XFCFBP8418_003510 AND XFCFBP8418_015320 AND XFCFBP8418_015330</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_02c0cfcc-783a-4ca4-8d3e-31820d1f8dd9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015320"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_core_kdo2lip6_XF_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_core_kdo2lip6_XF_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DMATT" metaid="_2aa97013-926a-4b5f-9998-5ed411e27b82" name="dimethylallyltranstransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005980</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2aa97013-926a-4b5f-9998-5ed411e27b82"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005980"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dmpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ipdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPt2_3pp" metaid="c4005074-397f-4200-9656-c1c1ff3a45de" name="R_ASPt2_3pp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c4005074-397f-4200-9656-c1c1ff3a45de"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_asp_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSTRS" metaid="c903eca2-cd93-4a27-b834-d0044c22820c" name="Cysteinyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025320</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c903eca2-cd93-4a27-b834-d0044c22820c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025320"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnacys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cystrna_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPGPPDP" metaid="_5e5254d2-8d42-429d-94f9-fac11e594eef" name="guanosine_3__5__bis_diphosphate__3__diphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_008750</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.1.7.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5e5254d2-8d42-429d-94f9-fac11e594eef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.7.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ppgpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR161x" metaid="_3766821c-aafe-44f0-bfee-3a2b6449de7f" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3766821c-aafe-44f0-bfee-3a2b6449de7f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_t3c9palmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hdeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_pi_e" metaid="_572cf404-6cb2-432d-9834-ea31cca085e0" name="R_EX_pi_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_572cf404-6cb2-432d-9834-ea31cca085e0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_pi_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RFAMPtpp" metaid="d8ed4b2f-81a6-4b6c-bb5e-dbdf61b056f3" name="Rifampin_transport_via_TolC_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d8ed4b2f-81a6-4b6c-bb5e-dbdf61b056f3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_rfamp_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_rfamp_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK180" metaid="_68cf3dab-f648-4345-ad8b-80f10c25045f" name="diacylglycerol_kinase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.1.107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_68cf3dab-f648-4345-ad8b-80f10c25045f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CITt10" metaid="c5c7be53-9be9-4db8-bea3-ef614b2faa48" name="R_CITt10" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025570</p> + <p>SUBSYSTEM: Transport</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c5c7be53-9be9-4db8-bea3-ef614b2faa48"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cit_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_mg2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cit_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mg2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK181" metaid="_29e19ab5-e127-4ed0-a7bc-0a8d226d4b3e" name="diacylglycerol_kinase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.1.107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_29e19ab5-e127-4ed0-a7bc-0a8d226d4b3e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_12dgr181_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GUAPRT" metaid="_8757a5bb-8bc0-4c66-8411-7747b3c46cad" name="guanine_phosphoribosyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021340</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.4.2.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8757a5bb-8bc0-4c66-8411-7747b3c46cad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gua_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G6PDA" metaid="_55f550d4-f869-44f9-a823-a6eb46a855aa" name="R_G6PDA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_55f550d4-f869-44f9-a823-a6eb46a855aa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gam6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CO2tpp" metaid="_592d5d7c-c23c-49c8-af79-69a9a21a2fda" name="CO2_transporter_via_diffusion__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_592d5d7c-c23c-49c8-af79-69a9a21a2fda"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_co2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IMPC" metaid="_7d0bf977-e0f9-4ab5-af73-71af1b9a3d62" name="IMP_cyclohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001030</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 3.5.4.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7d0bf977-e0f9-4ab5-af73-71af1b9a3d62"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fprica_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IMPD" metaid="_72dca34a-c389-4260-9c38-045ec53ce65b" name="IMP_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004780</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.205</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_72dca34a-c389-4260-9c38-045ec53ce65b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.205"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004780"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR120tipp" metaid="_2f365b72-eab7-4293-8e61-d3977b9fa9bb" name="R_12DGR120tipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2f365b72-eab7-4293-8e61-d3977b9fa9bb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr120_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_12dgr120_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MCTP1App" metaid="_1a4b0402-ae16-41d7-98d1-c957b449ea7f" name="murein_crosslinking_transpeptidase_1A__A2pm__D_ala___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004370 ) OR ( XFCFBP8418_008630 ) OR ( XFCFBP8418_010420 ) OR ( XFCFBP8418_011310 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1a4b0402-ae16-41d7-98d1-c957b449ea7f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004370"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011310"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein5px4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTP5" metaid="b143a1d1-0d57-43a7-85d4-71709412e774" name="R_NTP5" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006890</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b143a1d1-0d57-43a7-85d4-71709412e774"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHDPRy" metaid="_77a79940-cd78-46f6-ab2d-c08956d165d6" name="dihydrodipicolinate_reductase__NADPH_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023980</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 1.17.1.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_77a79940-cd78-46f6-ab2d-c08956d165d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.1.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023980"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_23dhdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SUCD1" metaid="_9a77c6f3-76f5-4645-8c68-52b4ee104b38" name="succinate_dehydrogenase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024610 AND XFCFBP8418_024620 AND XFCFBP8418_024640</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 1.3.99.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a77c6f3-76f5-4645-8c68-52b4ee104b38"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.99.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024610"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024620"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024640"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HISTP" metaid="b1733f22-e0c4-4eb7-96f9-649bb21770c6" name="histidinol_phosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020300</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 3.1.3.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b1733f22-e0c4-4eb7-96f9-649bb21770c6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020300"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hisp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_histd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NMNDA" metaid="_61a7656c-7c46-4733-b4bd-1793d3d8fb5c" name="R_NMNDA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014880</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.5.1.42</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_61a7656c-7c46-4733-b4bd-1793d3d8fb5c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.42"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014880"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nmn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nicrnt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTP1" metaid="d3528cbd-6c40-449d-bba4-dd0cd8970553" name="R_NTP1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006890</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d3528cbd-6c40-449d-bba4-dd0cd8970553"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE180" metaid="ada0daac-03d6-4b7a-9282-497bb1c97f15" name="R_FACOAE180" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ada0daac-03d6-4b7a-9282-497bb1c97f15"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_stcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ocdca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XF_Biomass" metaid="_7225f85e-e5f6-4220-ad18-5b756a79b0ba" 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species="M_3ooctACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2Otex" metaid="_2be83b09-483b-4a46-9dd0-31a07515d995" name="H2O_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2be83b09-483b-4a46-9dd0-31a07515d995"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + 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rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_ac_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPCTn" metaid="_108332eb-3f81-4162-b8e3-1bcd0dc6caa3" name="R_ASPCTn" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_020390 ) OR ( XFCFBP8418_020390 )</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 2.1.3.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_108332eb-3f81-4162-b8e3-1bcd0dc6caa3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.3.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020390"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020390"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cbp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cbasp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HISTD" metaid="b55307a6-0e24-4c04-a18a-50fb06f80c9e" name="histidinol_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020320</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.23</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b55307a6-0e24-4c04-a18a-50fb06f80c9e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020320"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_histd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_his_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NO3abcpp" metaid="_9522d0b7-f772-47d2-a160-5075d1284f88" name="Nitrate_ABC_transport" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007680</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: 3.6.3.26</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9522d0b7-f772-47d2-a160-5075d1284f88"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.26"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_no3_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_no3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HDCEAtexi" metaid="_23f15e46-b806-4dd5-8ede-cad6055826b4" name="R_HDCEAtexi" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_23f15e46-b806-4dd5-8ede-cad6055826b4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hdcea_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hdcea_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PYNP2r" metaid="d6acaab4-06bd-4525-97c8-5c45785d9e5e" name="pyrimidine_nucleoside_phosphorylase__uracil_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.4.2.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d6acaab4-06bd-4525-97c8-5c45785d9e5e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uri_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ura_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_r1p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METOX2s" metaid="_3599ab7d-5ca1-4f48-a7d6-a92fe92064c9" name="methionine_oxidation_2__spontaneous_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3599ab7d-5ca1-4f48-a7d6-a92fe92064c9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_metsox_R_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IGPDH" metaid="faddba79-b4a3-4926-bce0-a53eb0bca6b4" name="imidazoleglycerol_phosphate_dehydratase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020300</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#faddba79-b4a3-4926-bce0-a53eb0bca6b4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020300"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_eig3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_imacp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP8" metaid="c6e6c163-fb35-4065-9483-b861979d1fb8" name="R_NTPP8" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c6e6c163-fb35-4065-9483-b861979d1fb8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP7" metaid="_046bdf28-c0e5-4faf-83a5-02f473f3fdb9" name="R_NTPP7" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_046bdf28-c0e5-4faf-83a5-02f473f3fdb9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dttp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dtmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_s_e" metaid="d58ebf7a-8409-4264-993d-2093e0bf8638" name="R_EX_s_e" reversible="true"> + 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name="Nucleoside_triphosphate_pyrophosphorylase__itp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002620</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_191b40e0-ca4d-44a4-9c02-9d8ce4932b14"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_itp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + 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</bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LACZpp" metaid="e5b8a7d7-1c63-468e-a49a-389a1d5f2d2d" name="R_LACZpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007430</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.2.1.108</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e5b8a7d7-1c63-468e-a49a-389a1d5f2d2d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.108"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007430"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_lcts_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gal_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_glc_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SUCDi" metaid="ae9654e3-8ff5-405c-8ebc-a113bfcad1e6" name="succinate_dehydrogenase__irreversible_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024610 AND XFCFBP8418_024620 AND XFCFBP8418_024640</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 1.3.5.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ae9654e3-8ff5-405c-8ebc-a113bfcad1e6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.5.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024610"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024620"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024640"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP3" metaid="ba93ca71-afa0-469e-9d7f-1bd91cd4434a" name="Nucleoside_triphosphate_pyrophosphorylase__dctp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ba93ca71-afa0-469e-9d7f-1bd91cd4434a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dcmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP6" metaid="ed757e09-76c6-4cca-8623-918f4efc4b9b" name="R_NTPP6" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ed757e09-76c6-4cca-8623-918f4efc4b9b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP5" metaid="f14e6afc-e004-4b73-8d6d-6c8c0bb24d7e" name="Nucleoside_triphosphate_pyrophosphorylase__datp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f14e6afc-e004-4b73-8d6d-6c8c0bb24d7e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_datp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_damp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METDabcpp" metaid="_9bc8d89b-7d82-4017-b7e1-0759a6ae5774" name="R_METDabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010500 AND XFCFBP8418_010510 AND XFCFBP8418_010520</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9bc8d89b-7d82-4017-b7e1-0759a6ae5774"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010520"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_D_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG160abcpp" metaid="_86d0bbc7-9a05-4fd3-935a-bcf7aa6d3150" name="phosphatidylglycerol_transport_via_ABC_system__n_C16_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_86d0bbc7-9a05-4fd3-935a-bcf7aa6d3150"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg160_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ATPS4rpp" metaid="f0bf626d-9959-4d50-b908-57a66d78dd55" name="ATP_synthase__four_protons_for_one_ATP___periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023580 AND XFCFBP8418_023590 AND XFCFBP8418_023600 AND XFCFBP8418_023610 AND XFCFBP8418_023620 AND XFCFBP8418_023630 AND XFCFBP8418_023640 AND XFCFBP8418_023650</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 3.6.3.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f0bf626d-9959-4d50-b908-57a66d78dd55"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023600"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023620"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023610"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023590"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023580"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023640"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023650"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="4"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AMAOTr" metaid="e6386201-1524-44f5-bc9e-ff5b5450bfa2" name="adenosylmethionine_8_amino_7_oxononanoate_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015830</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.6.1.62</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e6386201-1524-44f5-bc9e-ff5b5450bfa2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.62"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015830"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_8aonn_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amob_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dann_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OAAt2_2pp" metaid="_5b7ec468-c57e-4f07-8b94-82144d9e3605" name="R_OAAt2_2pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025480</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5b7ec468-c57e-4f07-8b94-82144d9e3605"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> + <speciesReference constant="true" species="M_oaa_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NH3c" metaid="cf25787d-b625-4e50-854a-5f0419385415" name="R_NH3c" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cf25787d-b625-4e50-854a-5f0419385415"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nh3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ENOPH" metaid="ab9e5532-81ce-4b2e-8009-a6f5c6645073" name="R_ENOPH" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020250</p> + <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> + <p>EC_NUMBER: 3.1.3.77</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ab9e5532-81ce-4b2e-8009-a6f5c6645073"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.77"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dkmpp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dhmtp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CPPPGO2" metaid="_328d0e4c-75eb-41bd-8f17-10156c122052" name="Oxygen_Independent_coproporphyrinogen_III_oxidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002610</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.3.99.22</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_328d0e4c-75eb-41bd-8f17-10156c122052"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.99.22"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002610"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cpppg3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_amet_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dad_5_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pppg9_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_xyl_D_e" metaid="_2d657b08-0cfe-4ab3-852f-cb44d3994a2d" name="R_EX_xyl_D_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2d657b08-0cfe-4ab3-852f-cb44d3994a2d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_xyl_D_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LSERDHr" metaid="_1b843714-69dc-4846-9dd8-d0bb20effff2" name="R_LSERDHr" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015390</p> + <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.276</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1b843714-69dc-4846-9dd8-d0bb20effff2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.276"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2amsa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METOX1s" metaid="fc65cd2a-80ce-466a-bb41-c6bf6e2b84b5" name="methionine_oxidation__spontaneous_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fc65cd2a-80ce-466a-bb41-c6bf6e2b84b5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_metsox_S_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FEENTERtpp" metaid="_6d421127-f3ae-416c-94fc-18eb4cc116eb" name="R_FEENTERtpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025340</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6d421127-f3ae-416c-94fc-18eb4cc116eb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_enter_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_enter_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACt2rpp" metaid="_8f779ea9-4a35-44b7-b02b-61e49784d0bd" name="R_ACt2rpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8f779ea9-4a35-44b7-b02b-61e49784d0bd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ac_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGMT" metaid="e06ab7fc-72b8-431b-a687-75473d1666e8" name="phosphoglucomutase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 5.4.2.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e06ab7fc-72b8-431b-a687-75473d1666e8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.2.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + 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<rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_for_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_for_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HSERTA" metaid="_68945973-e5de-40c3-8e9d-e68a33ce7a1d" name="homoserine_O_trans_acetylase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005140</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 2.3.1.31</p> + </body> + </notes> + <annotation> + <rdf:RDF 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species="M_dtdp4d6dm_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HPPtpp" metaid="_99c34c8b-d2d9-4d75-ba6c-3a468da8bb20" name="3_hydroxypropionate_transport_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_99c34c8b-d2d9-4d75-ba6c-3a468da8bb20"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + 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+ </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPNCL2" metaid="ac9799a1-9612-46a2-9fcf-eb8e479756a9" name="phosphopantothenate_cysteine_ligase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015430</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ac9799a1-9612-46a2-9fcf-eb8e479756a9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015430"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4ppan_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4ppcys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL160t2pp" metaid="_189bb35a-cccc-4787-93d1-376f4a96741d" name="fatty_acid_CoA_ligase__hexadecanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_189bb35a-cccc-4787-93d1-376f4a96741d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_hdca_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pmtcoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G6PDH2r" metaid="_18f38ad3-0c49-4a07-b92b-0b0a39704b2a" name="glucose_6_phosphate_dehydrogenase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024680</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 1.1.1.49</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_18f38ad3-0c49-4a07-b92b-0b0a39704b2a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.49"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g6p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_6pgl_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR140x" metaid="_41865b96-d697-49fe-a260-28590901b124" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_41865b96-d697-49fe-a260-28590901b124"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tmrs2eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_myrsACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDPDRR" metaid="e4371e03-e60d-4744-a7bf-f8b7297e70bc" name="dTDP_4_dehydrorhamnose_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026220</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.133</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e4371e03-e60d-4744-a7bf-f8b7297e70bc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.133"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026220"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dtdp4d6dm_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dtdprmn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDPGDr" metaid="_581244d5-f3bb-46eb-9469-fd73d7ae2e78" name="UDPglucose_6_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018680</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.22</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_581244d5-f3bb-46eb-9469-fd73d7ae2e78"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.22"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_udpglcur_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLTGY1pp" metaid="_0296d9fc-1f09-40ab-8bf9-59a09c3ba31a" name="murein_lytic_transglycosylase__murein4p4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_003940 ) OR ( XFCFBP8418_019770 )</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0296d9fc-1f09-40ab-8bf9-59a09c3ba31a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019770"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein4p4p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PItex" metaid="_3de5ad84-d9ef-4513-b1a1-89ae96a9e24d" name="phosphate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3de5ad84-d9ef-4513-b1a1-89ae96a9e24d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pi_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INSEPIH" metaid="a8f99b02-7604-48a7-acc9-11a945e0f445" name="3D__3_5_4__trihydroxycyclohexane_1_2_dione_hydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a8f99b02-7604-48a7-acc9-11a945e0f445"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dkdepiins_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dglca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UM3PL" metaid="_99e0cf8b-7c15-4b53-9740-9c2a31a7e1d6" name="UDP_N_acetylmuramate_L_alanyl_gamma_D_glutamyl_meso_diaminopimelate_ligase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026060</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: 6.3.2.45</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_99e0cf8b-7c15-4b53-9740-9c2a31a7e1d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.45"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026060"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_LalaDgluMdap_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uamr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ugmd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHORTS" metaid="_0197284e-9752-40f7-a083-ab13da2f90e4" name="dihydroorotase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025380</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.5.2.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0197284e-9752-40f7-a083-ab13da2f90e4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.2.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025380"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhor_S_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cbasp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRASCS" metaid="_28e8db9c-a6c6-4596-8ddf-48b74c98cd53" name="phosphoribosylaminoimidazolesuccinocarboxamide_synthase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026780</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_28e8db9c-a6c6-4596-8ddf-48b74c98cd53"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026780"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_5aizc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_25aics_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLNtex" metaid="af01089c-0f17-484a-8e6b-ac20efef9a8f" name="L_glutamine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#af01089c-0f17-484a-8e6b-ac20efef9a8f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gln_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_mn2_e" metaid="_35d09179-85ad-4ed9-982a-a811ce8bfd7d" name="R_EX_mn2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_35d09179-85ad-4ed9-982a-a811ce8bfd7d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_mn2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP140abcpp" metaid="_64db8afd-c17f-4e58-8243-c385b91488b9" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C14_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_64db8afd-c17f-4e58-8243-c385b91488b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp140_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_arg_L_e" metaid="_4300546b-8d5e-44b0-a2a6-0312ee8de286" name="R_EX_arg_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4300546b-8d5e-44b0-a2a6-0312ee8de286"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_arg_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SCYSDS" metaid="a0191e6b-2355-48f8-956c-7a99c741781e" name="R_SCYSDS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002960 AND XFCFBP8418_025330</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.8.1.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a0191e6b-2355-48f8-956c-7a99c741781e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.8.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025330"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufse_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufsesh_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT160" metaid="_3b26aa1f-34ca-4dad-ad61-a2a6b9b9bdfe" name="1_hexadecanoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3b26aa1f-34ca-4dad-ad61-a2a6b9b9bdfe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_1hdecg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_palmACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AMPTASEPG" metaid="_23f1c327-2a1b-4fcf-90cc-bfefbde6302d" name="R_AMPTASEPG" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015310</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 3.4.11.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_23f1c327-2a1b-4fcf-90cc-bfefbde6302d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.11.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015310"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_progly_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT161" metaid="c64617ac-311d-4b54-aef2-376374955091" name="1_hexadec_7_enoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c64617ac-311d-4b54-aef2-376374955091"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_1hdec9eg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hdeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NNDPR" metaid="_83935dc5-8ee9-4dad-8a04-ec426c27cb6f" name="nicotinate_nucleotide_diphosphorylase__carboxylating_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000560</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.4.2.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_83935dc5-8ee9-4dad-8a04-ec426c27cb6f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000560"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_quln_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nicrnt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2O2tex" metaid="_4a3c5df9-fcc2-41ee-85d3-57088b40d9d5" name="hydrogen_peroxide_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4a3c5df9-fcc2-41ee-85d3-57088b40d9d5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SHK3Dr" metaid="_7406398b-f559-4d85-baa1-6920b86427ee" name="shikimate_dehydrogenase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006320</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.25</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7406398b-f559-4d85-baa1-6920b86427ee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006320"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3dhsk_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_skm_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACGK" metaid="_3aeb879a-defd-43b3-9081-935e4c82a433" name="acetylglutamate_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025260</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 2.7.2.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3aeb879a-defd-43b3-9081-935e4c82a433"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.2.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025260"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acglu_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acg5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XYLK2" metaid="_9e88a5e9-cd1c-4f71-90df-822c1c0b7c14" name="R_XYLK2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9e88a5e9-cd1c-4f71-90df-822c1c0b7c14"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xylu_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_xu5p_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MNt2pp" metaid="_15383220-6b0e-4974-b2b1-6ab3c9986d1b" name="manganese__Mn_2__transport_in_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025100</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_15383220-6b0e-4974-b2b1-6ab3c9986d1b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mn2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mn2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACGS" metaid="_134e5c0a-594b-48d7-ac9a-3c801410c386" name="N_acetylglutamate_synthase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025260</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: 2.3.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_134e5c0a-594b-48d7-ac9a-3c801410c386"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025260"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acglu_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR141x" metaid="c193df77-3f15-4f73-bf4a-295ff19c3f63" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c193df77-3f15-4f73-bf4a-295ff19c3f63"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_t3c7mrseACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUSAtpp" metaid="_2a1e61c7-0d81-43e9-92ba-81589d52587d" name="Fusidic_acid_transport_via_TolC_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2a1e61c7-0d81-43e9-92ba-81589d52587d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_fusa_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fusa_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HEX1" metaid="b51b0918-0366-46af-9051-2f9d45d9dce0" name="hexokinase__D_glucose_ATP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024690</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 2.7.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b51b0918-0366-46af-9051-2f9d45d9dce0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024690"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glc_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA141abcpp" metaid="af4f3f74-fbd6-48a3-b446-daf7dc9619e9" name="phosphatidate_transport_via_ABC_system__n_C14_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#af4f3f74-fbd6-48a3-b446-daf7dc9619e9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pa141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa141_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MG2tex" metaid="_010331b8-4e51-4805-adbd-540f39c725d8" name="magnesium__Mg_2__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_010331b8-4e51-4805-adbd-540f39c725d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mg2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mg2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UREAtpp" metaid="f4b7ccf6-301d-4907-9022-b862e6a29f46" name="Urea_transport_via_facilitate_diffusion__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020710</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f4b7ccf6-301d-4907-9022-b862e6a29f46"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_urea_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_urea_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS141pp" metaid="ab3b6156-8ad9-47af-bfcc-e942f8f7392c" name="cardiolipin_synthase__periplasmic__n_C14_1_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ab3b6156-8ad9-47af-bfcc-e942f8f7392c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pg141_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_clpn141_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDCPDP" metaid="f70432ed-67fa-4f14-9fa2-7dd667e8358a" name="undecaprenyl_diphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017720</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.6.1.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f70432ed-67fa-4f14-9fa2-7dd667e8358a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017720"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udcpdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udcpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYtex" metaid="_1663fe58-4112-48e2-8cef-d372f9bc3c20" name="glycine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1663fe58-4112-48e2-8cef-d372f9bc3c20"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gly_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gly_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CA2tex" metaid="_6f33b15b-8f42-472c-9e1e-5a417313088f" name="R_CA2tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6f33b15b-8f42-472c-9e1e-5a417313088f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ca2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ca2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LACZ" metaid="b6a2eacf-02ef-4757-b073-21d3fe545be6" name="R_LACZ" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007430</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.2.1.23</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b6a2eacf-02ef-4757-b073-21d3fe545be6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007430"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lcts_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glc_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gal_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPR" metaid="bed293e1-9ce9-416c-b0e5-fa5e6511d118" name="N_acetyl_g_glutamyl_phosphate_reductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025250</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 1.2.1.38</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bed293e1-9ce9-416c-b0e5-fa5e6511d118"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.38"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acg5sa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acg5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Bztex" metaid="_5b62e373-461f-4a8a-92f4-c11ee060f8aa" name="R_Bztex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5b62e373-461f-4a8a-92f4-c11ee060f8aa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_bz_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_bz_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XYLabcpp" metaid="_49d829e8-5877-4754-82ca-e6d254215d5b" name="R_XYLabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_019450</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49d829e8-5877-4754-82ca-e6d254215d5b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019450"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xyl_D_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xyl_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PFK_2" metaid="a62fee40-e915-4b75-9c4c-217c6b7d6451" name="R_PFK_2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026080</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a62fee40-e915-4b75-9c4c-217c6b7d6451"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tag6p_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_tagdp_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_ala_L_e" metaid="bd85b437-c114-49ec-9f03-45aab86b866e" name="R_EX_ala_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bd85b437-c114-49ec-9f03-45aab86b866e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_ala_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_A5PISO" metaid="_3dc617f3-cd4a-4062-9e2c-9ecde8ac30b4" name="arabinose_5_phosphate_isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003470</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 5.3.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3dc617f3-cd4a-4062-9e2c-9ecde8ac30b4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003470"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ru5p_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ara5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PFK_3" metaid="cf04e16a-842a-43d4-9bcc-7c6ce92d5f34" name="R_PFK_3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026080</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 2.7.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cf04e16a-842a-43d4-9bcc-7c6ce92d5f34"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_s7p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_s17bp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DMPPS" metaid="_0c69784a-fed3-4cee-b9ff-0b780aa4c2e9" name="1_hydroxy_2_methyl_2__E__butenyl_4_diphosphate_reductase__dmpp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004660</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.17.7.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0c69784a-fed3-4cee-b9ff-0b780aa4c2e9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.7.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004660"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2mb4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dmpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PTRCabcpp" metaid="e09fa73e-4241-4ee8-aace-6000c6002843" name="putrescine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.31</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e09fa73e-4241-4ee8-aace-6000c6002843"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ptrc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ptrc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LIPAabctex" metaid="d0901669-e727-4530-ae87-74cfa07d86b0" name="R_LIPAabctex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003500 AND XFCFBP8418_003510 AND XFCFBP8418_015320 AND XFCFBP8418_015330</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d0901669-e727-4530-ae87-74cfa07d86b0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015320"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo2lipidA_XF_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_kdo2lipidA_XF_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THFAT" metaid="a264d301-0933-454c-a596-0572f42082d6" name="Tetrahydrofolate_aminomethyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.1.2.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a264d301-0933-454c-a596-0572f42082d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_methf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5fthf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LIPOS" metaid="_2abbd216-a9dd-4510-8611-8ff11ef704b3" name="Lipoate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022360</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.8.1.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2abbd216-a9dd-4510-8611-8ff11ef704b3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.8.1.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amet_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4fe4s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_octapb_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2fe2s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dad_5_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lipopb_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe2_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PHEMEabcpp" metaid="_54264b6d-1559-46bf-93b1-caa233327906" name="R_PHEMEabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_005050 AND XFCFBP8418_005060 AND XFCFBP8418_005070 AND XFCFBP8418_005090</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_54264b6d-1559-46bf-93b1-caa233327906"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005050"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005060"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005070"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pheme_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pheme_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGMH" metaid="_425d6e2c-d506-41be-b57a-4943a04a2ff4" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_beta__1_4_N_acetylglucosaminidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021350</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_425d6e2c-d506-41be-b57a-4943a04a2ff4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021350"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhgm_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acgam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhm_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT180" metaid="_16fc294f-dc7e-4e90-9467-057ba96fdbad" name="1_octadecanoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_16fc294f-dc7e-4e90-9467-057ba96fdbad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_1odecg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ocdcaACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT181" metaid="ee2e90a2-a5c0-43d3-b432-96199a842fcd" name="1_octadec_7_enoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ee2e90a2-a5c0-43d3-b432-96199a842fcd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_octeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_1odec11eg3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLNabc" metaid="_83627658-def1-4564-a3c7-31ec67a96de5" name="R_GLNabc" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_83627658-def1-4564-a3c7-31ec67a96de5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD181" metaid="_9a7e24d6-b41f-423f-b110-002e27e6c5b9" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a7e24d6-b41f-423f-b110-002e27e6c5b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hcvac11eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_t3c11vaceACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD180" metaid="_056f92d6-acaa-44c3-90a4-c6a31f073669" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_056f92d6-acaa-44c3-90a4-c6a31f073669"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hoctaACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_toctd2eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE161abcpp" metaid="_77f7a92e-9927-4d64-b397-a4fcfa8138fe" name="phosphatidylethanolamine_transport_via_ABC_system__n_C16_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_77f7a92e-9927-4d64-b397-a4fcfa8138fe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe161_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GAMtex" metaid="ead08a95-0a7b-4d68-953d-b8dd8a7c3a6a" name="R_GAMtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ead08a95-0a7b-4d68-953d-b8dd8a7c3a6a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gam_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gam_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SERtex" metaid="a8ef9bf8-4075-4ca4-a656-34f3d41452c6" name="L_serine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a8ef9bf8-4075-4ca4-a656-34f3d41452c6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ser_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHFR" metaid="_1f19b72f-eeda-4abf-920a-07d6e7cffb38" name="dihydrofolate_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021150</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.5.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1f19b72f-eeda-4abf-920a-07d6e7cffb38"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021150"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHFS" metaid="_13a5fe0f-2844-417f-a8eb-1abf93b01f20" name="dihydrofolate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000740</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_13a5fe0f-2844-417f-a8eb-1abf93b01f20"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000740"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhpt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dhf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FEENTERtex" metaid="eacf7c47-e3ea-4bab-978d-9324629cf480" name="R_FEENTERtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012340</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eacf7c47-e3ea-4bab-978d-9324629cf480"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_enter_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_enter_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UPP3MT" metaid="fa32479a-0e66-4a55-a01e-631b6c2b6a7d" name="uroporphyrinogen_methyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010970</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.1.1.107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fa32479a-0e66-4a55-a01e-631b6c2b6a7d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010970"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amet_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_uppg3_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dscl_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ahcys_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XYLI1" metaid="cd735da3-d07f-42ea-9fa9-3f084052a9d4" name="R_XYLI1" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 5.3.1.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cd735da3-d07f-42ea-9fa9-3f084052a9d4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_xyl_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_xylu_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XYLK" metaid="_98a4c423-a9b2-42de-8f33-8674b923f3d6" name="xylulokinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_98a4c423-a9b2-42de-8f33-8674b923f3d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xylu_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_xu5p_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTHRDHpp" metaid="_84d8b4a0-718d-491a-84ac-f7e7523b2fad" name="glutathione_hydralase__periplasmic_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025410</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.4.19.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_84d8b4a0-718d-491a-84ac-f7e7523b2fad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.19.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025410"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_gthrd_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cgly_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHTNtex" metaid="_5a476698-d09d-4f4c-a26c-fd193b04d412" name="R_CHTNtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5a476698-d09d-4f4c-a26c-fd193b04d412"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chtbs_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_chtbs_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MSAR" metaid="_98df4efe-41f3-49e7-9a7f-8987cb7ec2e3" name="malonic_semialdehyde_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015390</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.1.1.298</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_98df4efe-41f3-49e7-9a7f-8987cb7ec2e3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.298"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_msa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AMPMS2" metaid="_3b4b5613-333a-4920-aa78-cf2eed4f8370" name="4_amino_2_methyl_5_phosphomethylpyrimidine_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_016510 ) OR ( XFCFBP8418_027850 )</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.99.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3b4b5613-333a-4920-aa78-cf2eed4f8370"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.99.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027850"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_air_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_4ampm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDCP3pp" metaid="_573aff9f-f091-49a1-9e66-52e4879215fc" name="murein_D_D_carboxypeptidase__murein5p5p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_018620 ) OR ( XFCFBP8418_020420 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.16.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_573aff9f-f091-49a1-9e66-52e4879215fc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.16.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein5p4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARD2" metaid="ce7fd466-1fc5-4da8-a40d-5d70368ec9fa" name="R_ARD2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020240</p> + <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> + <p>EC_NUMBER: 1.13.11.54</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ce7fd466-1fc5-4da8-a40d-5d70368ec9fa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.13.11.54"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhmtp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4met2obut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_P5CD1p" metaid="_4ad84f32-ce3b-4630-8826-a3020d5140e2" name="1_pyrroline_5_carboxylate_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 1.5.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4ad84f32-ce3b-4630-8826-a3020d5140e2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_1pyr5c_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FOMETR" metaid="_1651cb82-c525-41cb-8f93-9e8bb6281ea6" name="R_FOMETR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001390</p> + <p>SUBSYSTEM: Folate_Metabolism</p> + <p>EC_NUMBER: 2.1.2.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1651cb82-c525-41cb-8f93-9e8bb6281ea6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5fthf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_methf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Kt2pp" metaid="_8718fecd-eee8-420f-a4be-3aeee5445ae4" name="potassium_transport_in_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000330 ) OR ( XFCFBP8418_016360 ) OR ( XFCFBP8418_027690 )</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8718fecd-eee8-420f-a4be-3aeee5445ae4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016360"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027690"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_k_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_k_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDPGDH" metaid="_8e841417-5fac-40c4-a287-87f2a0124da0" name="dTDPglucose_4_6_dehydratase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026250</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.46</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8e841417-5fac-40c4-a287-87f2a0124da0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.46"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dtdpglu_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dtdp4d6dg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYCLTt4ex" metaid="_5ce94b73-8d6a-4acf-815e-aec66fc9a7d0" name="R_GLYCLTt4ex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ce94b73-8d6a-4acf-815e-aec66fc9a7d0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyclt_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyclt_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DXPRIi" metaid="bffea5f3-c1e8-4d36-9200-91ba586e143d" name="1_deoxy_D_xylulose_reductoisomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024850</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.267</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bffea5f3-c1e8-4d36-9200-91ba586e143d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.267"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024850"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2me4p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASNTRS" metaid="_84fdebe3-555f-439e-87c7-5a4f3f5c0d31" name="R_ASNTRS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012160</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.22</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_84fdebe3-555f-439e-87c7-5a4f3f5c0d31"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.22"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012160"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asn_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaasn_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_asntrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYTBO3_4pp" metaid="_01dd1124-5e22-4fa3-8cee-1216e6e867e1" name="cytochrome_oxidase_bo3__ubiquinol_8__4_protons___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003690 AND XFCFBP8418_003700 AND XFCFBP8418_003710 AND XFCFBP8418_003720</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 1.10.3.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01dd1124-5e22-4fa3-8cee-1216e6e867e1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.10.3.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003710"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003700"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_o2_c" stoichiometry="0.5"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="4"/> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="4"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR120x" metaid="_635730d1-8a7f-4230-8bd9-0b5daef1f031" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_635730d1-8a7f-4230-8bd9-0b5daef1f031"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tddec2eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ddcaACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_EPS_XF_e" metaid="_5512fd43-90cc-4517-bc0a-5a90ba495950" name="R_DM_EPS_XF_e" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5512fd43-90cc-4517-bc0a-5a90ba495950"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_EPS_XF_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_dextrin_DEC_e_" metaid="d21c4e58-5421-466c-aa2b-2a2f493b5588" name="R_dextrin_DEC_e_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d21c4e58-5421-466c-aa2b-2a2f493b5588"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dextrin_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_14aglucan_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRD_L" metaid="_7951650e-b0b5-43cb-9716-1a425fd82b23" name="L_threonine_deaminase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017920</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 4.3.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7951650e-b0b5-43cb-9716-1a425fd82b23"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017920"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thr_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2obut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MAN1PT2r" metaid="f011fe9c-b111-4709-a072-ea9a04772109" name="R_MAN1PT2r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026210</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f011fe9c-b111-4709-a072-ea9a04772109"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026210"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_man1p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gdpmann_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE2t2pp" metaid="b471c729-206a-4924-bb5d-60b302adf7d5" name="iron__II__transport_in_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025100</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b471c729-206a-4924-bb5d-60b302adf7d5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fe2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fe2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DNTPPA" metaid="_4c7cc316-928b-4cca-b6ce-eee5a4d3a1a7" name="R_DNTPPA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023820</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.6.1.67</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4c7cc316-928b-4cca-b6ce-eee5a4d3a1a7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.67"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ahdt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dhpmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_VALTRS" metaid="_59bfe82d-057b-4478-a969-8ad19fed6667" name="Valyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015270</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_59bfe82d-057b-4478-a969-8ad19fed6667"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015270"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_val_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaval_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_valtrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_man_e" metaid="c0b99037-9bd3-47d9-b2dd-d8746de1bfb6" name="R_EX_man_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c0b99037-9bd3-47d9-b2dd-d8746de1bfb6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_man_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DGLUISO" metaid="_5e26ce7d-687d-4b74-8e67-070b09d6f6a4" name="5_deoxy_D_glucuronic_acid_isomerase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5e26ce7d-687d-4b74-8e67-070b09d6f6a4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dglca_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dkglc_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACt4pp" metaid="_3fdc7bfe-8c80-414e-98a0-8c6be1009c89" name="Na__Acetate_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020610</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3fdc7bfe-8c80-414e-98a0-8c6be1009c89"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020610"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ac_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_na1_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_na1_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD161" metaid="_1629e996-4f3c-4656-9eac-7b497c254231" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1629e996-4f3c-4656-9eac-7b497c254231"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hcpalm9eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_t3c9palmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDEP1pp" metaid="c3ea7a13-1314-4e42-9915-b527a887f011" name="murein_D_D_endopeptidase__murein4px4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c3ea7a13-1314-4e42-9915-b527a887f011"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein4px4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4p4p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD160" metaid="_1a5a8a65-35a7-4682-af84-23430d8143a7" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1a5a8a65-35a7-4682-af84-23430d8143a7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hpalmACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tpalm2eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLtpp" metaid="_62636e29-a15d-4c1a-b82f-e7d10ec38aed" name="R_CLtpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_62636e29-a15d-4c1a-b82f-e7d10ec38aed"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cl_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cl_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_so4_e" metaid="c973e658-83ca-4cdb-884a-5b3695cd90e7" name="R_EX_so4_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c973e658-83ca-4cdb-884a-5b3695cd90e7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_so4_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROabcpp" metaid="d5fa365b-a304-44ee-ae06-93304242dd43" name="L_proline_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007680 AND XFCFBP8418_007690 ) OR ( XFCFBP8418_022120 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d5fa365b-a304-44ee-ae06-93304242dd43"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007690"/> + </fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022120"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pro_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR121x" metaid="_2b2701db-a16c-4397-bbb6-2fac326bbbaa" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C12_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2b2701db-a16c-4397-bbb6-2fac326bbbaa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_t3c5ddeceACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cddec5eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACMUMptspp" metaid="f7b75691-42ce-44e0-ade6-9e876276580c" name="R_ACMUMptspp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f7b75691-42ce-44e0-ade6-9e876276580c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acmum_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acmum6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TTRCYCtpp" metaid="f42c71ab-0b19-4b93-9518-684a533bc0fd" name="Tetracycline_transport_via_TolC_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f42c71ab-0b19-4b93-9518-684a533bc0fd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ttrcyc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ttrcyc_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GALt2" metaid="_70336839-2c1b-4ec1-95ff-43ed5dcb735c" name="R_GALt2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018650</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_70336839-2c1b-4ec1-95ff-43ed5dcb735c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_gal_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gal_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BTNt2tex" metaid="_17065047-6a16-4712-85c5-43d495f00b10" name="R_BTNt2tex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_17065047-6a16-4712-85c5-43d495f00b10"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_btn_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_btn_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BTNt2ipp" metaid="_4c4a9986-87b2-4f2c-9a86-7cbb89e5c394" name="R_BTNt2ipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4c4a9986-87b2-4f2c-9a86-7cbb89e5c394"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_btn_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_btn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAPGR" metaid="_752a8888-0aab-47a8-97bc-e69e63a4222b" name="UDP_N_acetylenolpyruvoylglucosamine_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012220</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.3.1.98</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_752a8888-0aab-47a8-97bc-e69e63a4222b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.98"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012220"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uaccg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uamr_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_St" metaid="_734bbc0a-8628-4df7-9cb5-6e444f23dcb6" name="R_St" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_734bbc0a-8628-4df7-9cb5-6e444f23dcb6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_s_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_s_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ICL" metaid="_37a917fc-b955-4189-aed5-76c371c3896e" name="Isocitrate_lyase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Anaplerotic_Reactions</p> + <p>EC_NUMBER: 4.1.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_37a917fc-b955-4189-aed5-76c371c3896e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_icit_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glx_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ATPHs" metaid="_9c2c5156-ceed-4286-a628-a988c5de0fbe" name="R_ATPHs" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.5.4.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9c2c5156-ceed-4286-a628-a988c5de0fbe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_itp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK4" metaid="_8e6b4881-d61c-4ae2-9d38-348c4a9acc87" name="nucleoside_diphosphate_kinase__ATP_dTDP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8e6b4881-d61c-4ae2-9d38-348c4a9acc87"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dtdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dttp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACLS" metaid="f6e3c3c3-5844-456c-89fa-a9cdbd61623d" name="acetolactate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017900 AND XFCFBP8418_017910</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 2.2.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f6e3c3c3-5844-456c-89fa-a9cdbd61623d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.2.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_alac_S_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK5" metaid="_8dfdec93-4f40-4c39-9f3c-d96e30952e65" name="nucleoside_diphosphate_kinase__ATP_dGDP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8dfdec93-4f40-4c39-9f3c-d96e30952e65"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dgdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dgtp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SSALy" metaid="_8f4264f6-9e76-4632-9aec-d02cebd4e009" name="R_SSALy" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.2.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8f4264f6-9e76-4632-9aec-d02cebd4e009"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sucsal_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MG2t3_2pp" metaid="_24a2065d-926c-4daf-a5a3-c451a3bdd574" name="R_MG2t3_2pp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_24a2065d-926c-4daf-a5a3-c451a3bdd574"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mg2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mg2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGMt2pp" metaid="_499cd0da-ac38-445f-be2c-0fd37860bb0d" name="GlcNAc_anhMurNAc_transport_in_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015550</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_499cd0da-ac38-445f-be2c-0fd37860bb0d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_anhgm_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK2" metaid="fb8b0ac5-9d06-4124-8cdf-31744363fa53" name="nucleoside_diphosphate_kinase__ATP_UDP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fb8b0ac5-9d06-4124-8cdf-31744363fa53"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGt2rpp" metaid="ccccc1d4-b6f1-49bf-85f7-6f7c444a7c54" name="R_ARGt2rpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020210</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ccccc1d4-b6f1-49bf-85f7-6f7c444a7c54"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020210"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_arg_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK3" metaid="_6937dd0f-e67b-4fa0-9e97-a7fa4f63c3a6" name="nucleoside_diphosphate_kinase__ATP_CDP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6937dd0f-e67b-4fa0-9e97-a7fa4f63c3a6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHORS" metaid="_6a897d1f-49f8-4da7-bd88-a7f00cd4ff26" name="chorismate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003900</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.2.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6a897d1f-49f8-4da7-bd88-a7f00cd4ff26"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3psme_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_chor_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THYMt3pp" metaid="_0f387fca-8fc8-4707-9393-ce4bf257835e" name="R_THYMt3pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0f387fca-8fc8-4707-9393-ce4bf257835e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thym_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_thym_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK1" metaid="_5ff4275e-3068-414e-9825-963bd0aaaace" name="nucleoside_diphosphate_kinase__ATP_GDP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ff4275e-3068-414e-9825-963bd0aaaace"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHORM" metaid="c9ef9723-b4f3-45c4-b434-b1d82a17f661" name="chorismate_mutase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021090</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 5.4.99.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c9ef9723-b4f3-45c4-b434-b1d82a17f661"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.99.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021090"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chor_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pphn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SLNTtex" metaid="_59bfd58d-db80-4046-87fa-07e1fe20a2e9" name="R_SLNTtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_59bfd58d-db80-4046-87fa-07e1fe20a2e9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_slnt_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_slnt_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_lys_L_e" metaid="_34b3bd5b-8073-429c-8023-21cc0a758eb2" name="R_EX_lys_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_34b3bd5b-8073-429c-8023-21cc0a758eb2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_lys_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK8" metaid="df515a47-fefa-4505-b7b3-5dd650efff0a" name="nucleoside_diphosphate_kinase__ATP_dADP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#df515a47-fefa-4505-b7b3-5dd650efff0a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dadp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_datp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK6" metaid="_1cf12621-15ab-45dc-8978-5853bee37832" name="nucleoside_diphosphate_kinase__ATP_dUDP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1cf12621-15ab-45dc-8978-5853bee37832"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dudp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dutp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK7" metaid="_6ae55dbd-0ec3-48a3-87e5-aeab9240820a" name="nucleoside_diphosphate_kinase__ATP_dCDP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6ae55dbd-0ec3-48a3-87e5-aeab9240820a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dcdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD141" metaid="_90032cc8-9ce7-4a28-933b-85c43b405895" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_90032cc8-9ce7-4a28-933b-85c43b405895"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hcmrs7eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_t3c7mrseACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ETFDH" metaid="fa3dc8e0-7469-4e03-9a23-76f958d313c6" name="Electron_transferring_flavoprotein_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022160 AND XFCFBP8418_026260 AND XFCFBP8418_026270</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 1.5.5.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fa3dc8e0-7469-4e03-9a23-76f958d313c6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.5.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026260"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026270"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_etfrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_etfox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD140" metaid="ff0ba4ff-1b01-455b-b108-acf6ac66253b" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ff0ba4ff-1b01-455b-b108-acf6ac66253b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hmrsACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tmrs2eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDH2" metaid="e1d8bd90-d0d4-467b-8a79-3b5c9ac34ffd" name="Malate_dehydrogenase__ubiquinone_8_as_acceptor_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009850</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 1.1.5.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e1d8bd90-d0d4-467b-8a79-3b5c9ac34ffd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.5.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009850"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mal_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR181tipp" metaid="_23a8f60b-f236-41c5-930b-37dcce5a346b" name="R_12DGR181tipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_23a8f60b-f236-41c5-930b-37dcce5a346b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr181_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_12dgr181_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD9" metaid="d8eb237f-c639-4696-b1d4-d9ed1d3f2ce7" name="5__nucleotidase__GMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d8eb237f-c639-4696-b1d4-d9ed1d3f2ce7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gsn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PMPK" metaid="_748158b4-58e6-4058-b881-81fe9214c5f9" name="phosphomethylpyrimidine_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006340</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.4.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_748158b4-58e6-4058-b881-81fe9214c5f9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4ampm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2mahmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD5" metaid="b12d5780-c02d-4806-a0aa-ae388924f32e" name="5__nucleotidase__dTMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b12d5780-c02d-4806-a0aa-ae388924f32e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dtmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_thymd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTHPe" metaid="_07676509-b6dc-4312-b61e-6d00cf2d7843" name="glutathione_peroxidase__e_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_016490 ) OR ( XFCFBP8418_027830 )</p> + <p>SUBSYSTEM: Superoxide_radicals_degradation</p> + <p>EC_NUMBER: 1.11.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_07676509-b6dc-4312-b61e-6d00cf2d7843"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.11.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027830"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016490"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gthrd_e" stoichiometry="2"/> + <speciesReference constant="true" species="M_h2o2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gthox_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_e" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD6" metaid="b2e4836e-8385-49c1-bce5-d7b29f6708a9" name="5__nucleotidase__dAMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b2e4836e-8385-49c1-bce5-d7b29f6708a9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_damp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dad_2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD7" metaid="ef706ea1-e25a-4328-8f3e-3adff8714efc" name="5__nucleotidase__AMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ef706ea1-e25a-4328-8f3e-3adff8714efc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD8" metaid="_8a0f2edf-f196-43d9-bafe-75bb488fbe30" name="5__nucleotidase__dGMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8a0f2edf-f196-43d9-bafe-75bb488fbe30"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dgmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dgsn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD1" metaid="_2af412c4-0b5e-4ea6-a36d-04b8d824a7c2" name="5__nucleotidase__dUMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2af412c4-0b5e-4ea6-a36d-04b8d824a7c2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dump_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_duri_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD2" metaid="_44c95b00-242e-492b-b9ec-734ffe6b1499" name="5__nucleotidase__UMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_44c95b00-242e-492b-b9ec-734ffe6b1499"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_uri_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD3" metaid="_3fa0db80-f0dd-4110-b165-68ae0a69d35a" name="5__nucleotidase__dCMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3fa0db80-f0dd-4110-b165-68ae0a69d35a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dcmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dcyt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD4" metaid="ea65d95f-0616-4577-92a3-5925cbdc1c70" name="5__nucleotidase__CMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ea65d95f-0616-4577-92a3-5925cbdc1c70"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + 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rdf:about="#bd3417a6-6b7f-4ceb-bcaa-c40abddd67ad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pheme_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pheme_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DBTSr" metaid="b5bd87e7-9dc6-46dd-8b15-72d3bba6ccee" name="dethiobiotin_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005250</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.3.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b5bd87e7-9dc6-46dd-8b15-72d3bba6ccee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.3.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dann_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dtbt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE3Gabcpp" metaid="_0a9e571a-729f-4b63-a847-32f19c7e41dd" name="R_FE3Gabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012840</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0a9e571a-729f-4b63-a847-32f19c7e41dd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe3_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe3_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLCGSD_c" metaid="c37202c6-f0f8-4fd7-aeaf-7049b792bf93" name="R_GLCGSD_c" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c37202c6-f0f8-4fd7-aeaf-7049b792bf93"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="11"/> + <speciesReference constant="true" species="M_14aglucan_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glc_D_c" stoichiometry="12"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2SO" metaid="db507ffb-2fd9-443e-9dfc-62c2a6653f5f" name="R_H2SO" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#db507ffb-2fd9-443e-9dfc-62c2a6653f5f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_so4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TMDS" metaid="_00cd6cef-032d-4134-8100-858239e9af41" name="thymidylate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021160</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.1.1.45</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_00cd6cef-032d-4134-8100-858239e9af41"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.45"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021160"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dump_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dtmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PDX5PS" metaid="_8bf4a65b-e5cb-4699-a6f4-fa2a050deccc" name="Pyridoxine_5__phosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010890 AND XFCFBP8418_014620</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8bf4a65b-e5cb-4699-a6f4-fa2a050deccc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014620"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010890"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_phthr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pdx5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSERTr" metaid="_880ff223-84ce-40fd-b6b5-464a0a327b33" name="phosphoserine_transaminase_reversible" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021100</p> + <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.52</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_880ff223-84ce-40fd-b6b5-464a0a327b33"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.52"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3php_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pser_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SPMS" metaid="_89460829-87c3-46b3-8c6c-595f9fe28999" name="spermidine_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015370</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 2.5.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_89460829-87c3-46b3-8c6c-595f9fe28999"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015370"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ametam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ptrc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5mta_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_spmd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGN" metaid="_2a015dd2-0581-48c4-9594-0a49331c188c" name="arginase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 3.5.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2a015dd2-0581-48c4-9594-0a49331c188c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_orn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_urea_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CTPS2" metaid="_13da69ab-0d1c-4f42-bee4-2a1d39160097" name="CTP_synthase__glutamine_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022240</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 6.3.4.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_13da69ab-0d1c-4f42-bee4-2a1d39160097"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ATPPRTr" metaid="_0c686895-bb92-4259-b366-6864383857b5" name="ATP_phosphoribosyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020330</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 2.4.2.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0c686895-bb92-4259-b366-6864383857b5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020330"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prbatp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDCP5pp" metaid="ffdcc002-2deb-49f2-9bb9-e9e6a9bfcd36" name="murein_D_D_carboxypeptidase__murein5p3p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_018620 ) OR ( XFCFBP8418_020420 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.16.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ffdcc002-2deb-49f2-9bb9-e9e6a9bfcd36"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.16.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5p3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4p3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PDX5PO" metaid="_803d8994-51db-41c0-8563-f8707cce7608" name="pyridoxine_5__phosphate_oxidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004150</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.4.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_803d8994-51db-41c0-8563-f8707cce7608"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.4.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004150"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pdx5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pydx5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROD2" metaid="b5d69dbf-275a-4438-95e0-a0da3d4b00f3" name="Proline_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 1.5.99.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b5d69dbf-275a-4438-95e0-a0da3d4b00f3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.99.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_1pyr5c_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_APCS" metaid="f189ca07-aa4c-49ba-a22a-686d1706b5f5" name="R_APCS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015370</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 2.5.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f189ca07-aa4c-49ba-a22a-686d1706b5f5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015370"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ametam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_15dap_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5mta_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_na15dap_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MTHFD" metaid="db141efd-85a3-4f46-b622-01f77e5817da" name="methylenetetrahydrofolate_dehydrogenase__NADP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004790</p> + <p>SUBSYSTEM: Folate_Metabolism</p> + <p>EC_NUMBER: 1.5.1.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#db141efd-85a3-4f46-b622-01f77e5817da"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004790"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_methf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MTHFC" metaid="_5fa06a26-166c-4fa3-93a0-1d5698a8b5b3" name="methenyltetrahydrofolate_cyclohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004790</p> + <p>SUBSYSTEM: Folate_Metabolism</p> + <p>EC_NUMBER: 3.5.4.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5fa06a26-166c-4fa3-93a0-1d5698a8b5b3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004790"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_methf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_10fthf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OHPBAT" metaid="_0b00da5e-5263-4a0f-8d84-3be9ce2e27c3" name="O_Phospho_4_hydroxy_L_threonine_2_oxoglutarate_aminotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021100</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.6.1.52</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0b00da5e-5263-4a0f-8d84-3be9ce2e27c3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.52"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ohpb_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_phthr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP141pp" metaid="ae795ce0-e733-4557-8d0f-fdd8bc63b4e8" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ae795ce0-e733-4557-8d0f-fdd8bc63b4e8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp141_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg141_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AP5AH" metaid="_83169f0e-2340-4479-9035-d6c6f4bbc140" name="Ap5A_hydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019500</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.61</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_83169f0e-2340-4479-9035-d6c6f4bbc140"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.61"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019500"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ap5a_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM4PH" metaid="_19997018-7609-4bb6-84a0-d013de71994b" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tetrapeptide_beta__1_4_N_acetylglucosaminidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021350</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_19997018-7609-4bb6-84a0-d013de71994b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021350"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_anhgm4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhm4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acgam_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TREptspp" metaid="_533ae11a-b048-4dc4-99d8-e11df0190fc8" name="R_TREptspp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND No_Assignment2 AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_533ae11a-b048-4dc4-99d8-e11df0190fc8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment2"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tre_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tre6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTHOr" metaid="_5200a072-a335-4b28-bb9d-b0006470ef4d" name="glutathione_oxidoreductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002170</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.8.1.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5200a072-a335-4b28-bb9d-b0006470ef4d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002170"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gthox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACGAMT" metaid="be79aead-a49a-4c67-903c-874f23419c47" name="R_ACGAMT" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004820</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#be79aead-a49a-4c67-903c-874f23419c47"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udcpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uacgam_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_unaga_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR100x" metaid="f47bdb4a-719a-4aee-8dfa-7596f47b6ed8" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C10_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f47bdb4a-719a-4aee-8dfa-7596f47b6ed8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tdec2eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dcaACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ZN2tex" metaid="ab2f5868-2024-44b9-887b-ccf667eb087f" name="R_ZN2tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ab2f5868-2024-44b9-887b-ccf667eb087f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_zn2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_zn2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NO3tex" metaid="e1734774-24bd-4670-b857-68c7d7be46ae" name="nitrate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e1734774-24bd-4670-b857-68c7d7be46ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_no3_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_no3_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ANHMK" metaid="_9ad62f87-a3a2-479a-8241-0e7f5a57ad1a" name="1_6_anhydrous_N_Acetylmuramate_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015560</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: 2.7.1.170</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9ad62f87-a3a2-479a-8241-0e7f5a57ad1a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.170"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015560"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhm_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acmum6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MNabc_1" metaid="_04da6e87-f3dc-4788-93c3-c5599974807b" name="R_MNabc_1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: 3.6.3.35</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_04da6e87-f3dc-4788-93c3-c5599974807b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.35"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mn2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mn2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DCTPD2" metaid="_24b63732-de2d-45f4-a436-4d69eb4e5058" name="dCTP_deaminase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011560</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.5.4.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_24b63732-de2d-45f4-a436-4d69eb4e5058"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011560"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SPMDtex" metaid="_9e27748f-20df-4e06-8900-612653c342f6" name="spermidine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009840</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: 3.6.3.31</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9e27748f-20df-4e06-8900-612653c342f6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_spmd_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_spmd_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE3tex" metaid="_1957b4ed-7e5b-4ac0-bd1f-6b1c41ba35bc" name="iron__III__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1957b4ed-7e5b-4ac0-bd1f-6b1c41ba35bc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fe3_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fe3_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACONTa" metaid="_67a44e2f-c272-4145-a365-5d7992ea2a59" name="aconitase__half_reaction_A__Citrate_hydro_lyase_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_022570 ) OR ( XFCFBP8418_025910 ) OR ( XFCFBP8418_025940 )</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 4.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_67a44e2f-c272-4145-a365-5d7992ea2a59"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022570"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025940"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cit_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acon_C_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACONTb" metaid="ddd85e75-afbd-47f2-9d5f-910734316be2" name="aconitase__half_reaction_B__Isocitrate_hydro_lyase_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_022570 ) OR ( XFCFBP8418_025910 ) OR ( XFCFBP8418_025940 )</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 4.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ddd85e75-afbd-47f2-9d5f-910734316be2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022570"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025940"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acon_C_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_icit_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUt2rpp" metaid="_09da3e46-6d4a-456a-b166-a0a0494d351b" name="R_GLUt2rpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000650</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_09da3e46-6d4a-456a-b166-a0a0494d351b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR160" metaid="c697ce5f-c134-46b1-b633-71634fdf17b9" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c697ce5f-c134-46b1-b633-71634fdf17b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3opalmACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hpalmACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_pro_L_e" metaid="_836b4621-e7d2-45ac-9d3a-a6be05a162a6" name="R_EX_pro_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_836b4621-e7d2-45ac-9d3a-a6be05a162a6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_pro_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR161" metaid="eba2b6d8-8b0f-4470-8be0-509695ddd781" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eba2b6d8-8b0f-4470-8be0-509695ddd781"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3ocpalm9eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hcpalm9eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_K2L4Aabctex" metaid="_8f58e924-4608-434e-9a13-13ca1c09b76f" name="R_K2L4Aabctex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003500 AND XFCFBP8418_003510 AND XFCFBP8418_015320 AND XFCFBP8418_015330</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8f58e924-4608-434e-9a13-13ca1c09b76f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015320"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo2lipid4_XF_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo2lipid4_XF_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TRDR" metaid="_84967ad6-6731-4f9e-bf52-1e7d8087edc7" name="thioredoxin_reductase__NADPH_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003190 AND XFCFBP8418_013260</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 1.8.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_84967ad6-6731-4f9e-bf52-1e7d8087edc7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003190"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CU1Opp" metaid="_2df0f7fa-a7cb-4f3e-a134-2a79c561a3be" name="Cuprous_Oxidase__Cu_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015250</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: 1.16.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2df0f7fa-a7cb-4f3e-a134-2a79c561a3be"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.16.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cu_p" stoichiometry="4"/> + <speciesReference constant="true" species="M_o2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="4"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cu2_p" stoichiometry="4"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT161" metaid="_8743f99e-7c52-4a20-b3f9-ebd7f69a6f96" name="R_G3PAT161" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8743f99e-7c52-4a20-b3f9-ebd7f69a6f96"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hdeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_1hdec9eg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPKr" metaid="_296dbd06-b104-4ade-8554-7fb5947ef74f" name="polyphosphate_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012370</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 2.7.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_296dbd06-b104-4ade-8554-7fb5947ef74f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012370"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CDPMEK" metaid="_3d262e90-fef9-4e40-9171-7fa2af701e00" name="4__cytidine_5__diphospho__2_C_methyl_D_erythritol_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012890</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.1.148</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d262e90-fef9-4e40-9171-7fa2af701e00"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.148"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4c2me_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2p4c2me_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT160" metaid="_0d791462-eb70-44f7-9e4d-3b6f0b5916bc" name="R_G3PAT160" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0d791462-eb70-44f7-9e4d-3b6f0b5916bc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_palmACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_1hdecg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR40x" metaid="bd1217d3-2f78-4182-a09d-af56c64865f2" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C4_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bd1217d3-2f78-4182-a09d-af56c64865f2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_but2eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_butACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALR2" metaid="_1e88fcb4-f43e-4d83-a5ff-c5975edf1664" name="aldose_reductase__methylglyoxal_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_008650</p> + <p>SUBSYSTEM: Methylglyoxal_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1e88fcb4-f43e-4d83-a5ff-c5975edf1664"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mthgxl_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acetol_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ThDPAT" metaid="_80a4c7df-ab7a-4bca-9b2f-19945f08db4e" name="R_ThDPAT" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_80a4c7df-ab7a-4bca-9b2f-19945f08db4e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thmpp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_athtp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IGPS" metaid="_1bc1f9b0-e8fa-4073-8597-eb6a18fa2e58" name="indole_3_glycerol_phosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026720</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.1.1.48</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1bc1f9b0-e8fa-4073-8597-eb6a18fa2e58"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.48"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026720"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2cpr5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ig3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HPPtex" metaid="_29dee993-41e5-4ed3-aa67-0e67e024cdc7" name="3_hydroxypropionate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_29dee993-41e5-4ed3-aa67-0e67e024cdc7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hpp_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3hpp_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INDOLEt2pp" metaid="f09cdaf4-7b4c-4c97-b788-b1022184b24c" name="R_INDOLEt2pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f09cdaf4-7b4c-4c97-b788-b1022184b24c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_indole_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_indole_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALAALAabcpp" metaid="_1463c0d7-56a1-436e-9e50-55a7b363bff0" name="D_alanyl_D_alanine__DalaDala__transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1463c0d7-56a1-436e-9e50-55a7b363bff0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_alaala_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_alaala_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S4FE4SR" metaid="a39e83c4-8130-4285-a95c-5019026fba5d" name="R_S4FE4SR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a39e83c4-8130-4285-a95c-5019026fba5d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufbcd_2fe2s2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_sufbcd_4fe4s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SLCYSS" metaid="f39f7141-fb0d-4e12-9e6b-855ed0a8b96a" name="R_SLCYSS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006490 ) OR ( XFCFBP8418_010980 )</p> + <p>SUBSYSTEM: Cystein_Metabolism</p> + <p>EC_NUMBER: 2.5.1.47</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f39f7141-fb0d-4e12-9e6b-855ed0a8b96a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.47"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010980"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006490"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tsul_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acser_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_scys_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2Stex" metaid="_9a4a4643-63be-43f7-8b3a-6c7f06817bc9" name="Hydrogen_sulfide_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a4a4643-63be-43f7-8b3a-6c7f06817bc9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2s_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2s_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S4FE4ST" metaid="_2a1716f0-15c5-4cc4-99a2-b839a2e051ed" name="R_S4FE4ST" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950 AND XFCFBP8418_012150</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2a1716f0-15c5-4cc4-99a2-b839a2e051ed"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012150"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_sufbcd_4fe4s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="4"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4fe4s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufbcd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TREtex" metaid="bbe09276-0f1b-463f-a7f8-af3a0e0888f4" name="trehalose_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bbe09276-0f1b-463f-a7f8-af3a0e0888f4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tre_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_tre_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_ca2_e" metaid="_5cb9433a-1034-41dc-9665-2169a037d64e" name="R_EX_ca2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5cb9433a-1034-41dc-9665-2169a037d64e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_ca2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EDTXS3XF" metaid="_0d0e9caf-e261-478c-aa35-a28ea1bbabe7" name="R_EDTXS3XF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004060 ) OR ( XFCFBP8418_015020 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.-</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0d0e9caf-e261-478c-aa35-a28ea1bbabe7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.-"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004060"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015020"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hddecACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo2lipid4HL_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_kdo2lipidA_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA161abcpp" metaid="c05fbc20-f6ee-4d43-a4da-d019b0a17c45" name="phosphatidate_transport_via_ABC_system__n_C16_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c05fbc20-f6ee-4d43-a4da-d019b0a17c45"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa161_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR140" metaid="_3f7cf43a-bec4-4e63-bcc4-6321a02571c1" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3f7cf43a-bec4-4e63-bcc4-6321a02571c1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3omrsACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hmrsACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR180tipp" metaid="bdba66cf-d220-480a-884e-50c672f09150" name="R_12DGR180tipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bdba66cf-d220-480a-884e-50c672f09150"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr180_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_12dgr180_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GMPS2" metaid="_8fe6e735-7903-4534-8398-e8ee0a6624c6" name="GMP_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004770</p> + <p>SUBSYSTEM: Purine_biosynthesis</p> + <p>EC_NUMBER: 6.3.5.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8fe6e735-7903-4534-8398-e8ee0a6624c6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.5.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004770"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_gmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR141" metaid="_49728e10-3c78-43f6-a132-ea7cc9eb9fbb" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49728e10-3c78-43f6-a132-ea7cc9eb9fbb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3ocmrs7eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hcmrs7eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL180t2pp" metaid="eb1f72a2-ac74-4a5c-b7bc-9b29c71d87f6" name="fatty_acid_CoA_ligase__octadecanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eb1f72a2-ac74-4a5c-b7bc-9b29c71d87f6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ocdca_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_stcoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PYAM5POr" metaid="_6a4ff0cf-2525-49ac-8234-77e07699f8b0" name="pyridoxamine_5__phosphate_oxidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004150</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.4.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6a4ff0cf-2525-49ac-8234-77e07699f8b0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.4.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004150"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyam5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pydx5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUabcpp" metaid="_8e7235ba-0cae-487d-9a6c-5324972d6fdf" name="L_glutamate_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007600</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.21</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8e7235ba-0cae-487d-9a6c-5324972d6fdf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.21"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007600"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT140" metaid="_28833569-f07f-40e5-b678-fa48db25b28a" name="R_G3PAT140" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_28833569-f07f-40e5-b678-fa48db25b28a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_myrsACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_1tdecg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SO3tex" metaid="_18616028-27c7-4c6b-af75-6cc5f4b1bf92" name="R_SO3tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_18616028-27c7-4c6b-af75-6cc5f4b1bf92"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_so3_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_so3_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT141" metaid="_0ecee537-dc8c-47f3-83c2-37fde71aca86" name="R_G3PAT141" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0ecee537-dc8c-47f3-83c2-37fde71aca86"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_1tdec7eg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_zn2_e" metaid="_4159c7ec-d404-4f29-8f77-4aeb035a94d3" name="R_EX_zn2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4159c7ec-d404-4f29-8f77-4aeb035a94d3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_zn2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ICITt_kt" metaid="f31ef274-0ba9-42bf-8ec3-36b15d0f53ae" name="R_ICITt_kt" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025570</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f31ef274-0ba9-42bf-8ec3-36b15d0f53ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_icit_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_icit_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS161pp" metaid="_330389ae-5902-43a7-bbb8-8539ca5d20f6" name="cardiolipin_synthase__periplasmic__n_C16_1_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_330389ae-5902-43a7-bbb8-8539ca5d20f6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pg161_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_clpn161_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2Otpp" metaid="_428d2359-fbda-446b-968a-347363e63c46" name="H2O_transport_via_diffusion__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_428d2359-fbda-446b-968a-347363e63c46"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYOX3" metaid="f55a5957-c961-408b-8b81-cefe28454487" name="R_GLYOX3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023680</p> + <p>SUBSYSTEM: Methylglyoxal_Metabolism</p> + <p>EC_NUMBER: 4.2.1.130</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f55a5957-c961-408b-8b81-cefe28454487"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.130"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mthgxl_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_lac_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_mg2_e" metaid="_7aad2af7-c5ef-42cf-b7dc-a845bf767d19" name="R_EX_mg2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7aad2af7-c5ef-42cf-b7dc-a845bf767d19"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_mg2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHGLYH" metaid="_9db97772-9661-4bce-9fe2-80cb8f3ee38f" name="R_DHGLYH" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9db97772-9661-4bce-9fe2-80cb8f3ee38f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhgly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glx_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DB4PS" metaid="_421cf543-364a-4062-846b-f8f45f1a69a1" name="3_4_Dihydroxy_2_butanone_4_phosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009770</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.99.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_421cf543-364a-4062-846b-f8f45f1a69a1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.99.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009770"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ru5p_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_db4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDCP2App" metaid="_80658f59-ff34-4f09-b691-7484e8d693a4" name="murein_L_D_carboxypeptidase__murein5p5p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.17.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_80658f59-ff34-4f09-b691-7484e8d693a4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein5p3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_alaala_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACACT1r" metaid="_87eb8bca-e417-4d10-8773-fb67586b7b3c" name="acetyl_CoA_C_acetyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_87eb8bca-e417-4d10-8773-fb67586b7b3c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_aacoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP181pp" metaid="_27e14e08-7e2a-4bd7-b2c1-f25770fdc7b2" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_27e14e08-7e2a-4bd7-b2c1-f25770fdc7b2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp181_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg181_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FRUpts2" metaid="_49070d4c-f0be-4db8-8494-ed3d451df624" name="R_FRUpts2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49070d4c-f0be-4db8-8494-ed3d451df624"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fru_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACHBS" metaid="_789c92ae-6b7b-4d83-ad40-4db45c2628ad" name="2_aceto_2_hydroxybutanoate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017900 AND XFCFBP8418_017910</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 2.2.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_789c92ae-6b7b-4d83-ad40-4db45c2628ad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.2.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2obut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2ahbut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHTNABCt" metaid="_66ab3ddb-b37e-4479-a284-4e4856416781" name="R_CHTNABCt" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_66ab3ddb-b37e-4479-a284-4e4856416781"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chtbs_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_chtbs_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA120abcpp" metaid="e5726ea6-018f-4fa7-a709-2a4af8810ec5" name="phosphatidate_transport_via_ABC_system__n_C12_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e5726ea6-018f-4fa7-a709-2a4af8810ec5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa120_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa120_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HISDr" metaid="_2d6e0f6b-14f9-4471-895d-0846b763cb9f" name="histidase_r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 4.3.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2d6e0f6b-14f9-4471-895d-0846b763cb9f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_his_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_urcan_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM3Pt2pp" metaid="_18440f86-dad4-41f8-8cfb-e015c27965aa" name="GlcNAc_anhMurNAc_tripeptide_transport_in_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015550</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_18440f86-dad4-41f8-8cfb-e015c27965aa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhgm3p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ANPRT" metaid="e154ca2e-3890-47e1-aea1-87fc24c96233" name="anthranilate_phosphoribosyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026730</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 2.4.2.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e154ca2e-3890-47e1-aea1-87fc24c96233"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026730"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_anth_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pran_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AHSERL3" metaid="_28ebcd3c-2de8-4221-9952-56d90ca3e156" name="R_cysteine_synthase__Selenide_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006490 ) OR ( XFCFBP8418_010590 ) OR ( XFCFBP8418_010980 )</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_28ebcd3c-2de8-4221-9952-56d90ca3e156"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010590"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010980"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006490"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acser_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_seln_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_selcys_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AHSERL2" metaid="_1e0210a1-ddb2-4251-99e6-242396b57ff1" name="R_AHSERL2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010590</p> + <p>SUBSYSTEM: Cystein_Metabolism</p> + <p>EC_NUMBER: 2.5.1.49</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1e0210a1-ddb2-4251-99e6-242396b57ff1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.49"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_achms_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2s_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hcys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G2PP" metaid="_889da4e8-8566-4f3f-acb8-97291ae9294b" name="glycerol_2_phosphate_phosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005240</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.1.3.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_889da4e8-8566-4f3f-acb8-97291ae9294b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/ 3.1.3.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc2p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PHEMEAS" metaid="_4dff57e7-ed27-4653-9ce4-88dfebdec7d8" name="putative_hemeA_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003990</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4dff57e7-ed27-4653-9ce4-88dfebdec7d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003990"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hemeO_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hemeA_1_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_fe2_e" metaid="ff3238a4-c949-47c0-91fd-b6300ab90ff7" name="R_EX_fe2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ff3238a4-c949-47c0-91fd-b6300ab90ff7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_fe2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR120" metaid="_73a75cd3-61a7-4f57-9e50-0270d6928984" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_73a75cd3-61a7-4f57-9e50-0270d6928984"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3oddecACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hddecACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FTHFD" metaid="_97dbb6ec-f60d-41d3-9872-a30786df7ee9" name="formyltetrahydrofolate_deformylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017820</p> + <p>SUBSYSTEM: Folate_Metabolism</p> + <p>EC_NUMBER: 3.5.1.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_97dbb6ec-f60d-41d3-9872-a30786df7ee9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_10fthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR121" metaid="_94014400-7692-4e52-a4cd-e4a5ede8c869" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C12_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_94014400-7692-4e52-a4cd-e4a5ede8c869"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3ocddec5eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hcddec5eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SUCCt3pp" metaid="_11a2ab15-ec29-4b32-a8f2-63b22bb92ef7" name="R_SUCCt3pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_11a2ab15-ec29-4b32-a8f2-63b22bb92ef7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_succ_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA141" metaid="_8f1551cd-700d-4fa8-a5ac-06562bd1596f" name="Phosphatidylglycerol_synthase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8f1551cd-700d-4fa8-a5ac-06562bd1596f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdtdec7eg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HIStex" metaid="d880ccde-0889-4968-9fb8-f43fb3d638f2" name="L_histidine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d880ccde-0889-4968-9fb8-f43fb3d638f2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_his_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_his_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA140" metaid="_0c38e552-5295-476b-b889-e73a205647b9" name="Phosphatidylglycerol_synthase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0c38e552-5295-476b-b889-e73a205647b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdtdecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LPSS1XF" metaid="faf631a7-983a-4d80-8094-afc7f95450db" name="R_LPSS1XF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#faf631a7-983a-4d80-8094-afc7f95450db"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gdpmann_c" stoichiometry="4"/> + <speciesReference constant="true" species="M_udpxyl_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_kdo2lipidA_XF_c" stoichiometry="4"/> + <speciesReference constant="true" species="M_udpgalur_c" stoichiometry="53"/> + <speciesReference constant="true" species="M_udpg_c" stoichiometry="15"/> + <speciesReference constant="true" species="M_dtdprmn_c" stoichiometry="19"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" 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rdf:resource="http://identifiers.org/ec-code/4.2.1.44"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2ins_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dkdepiins_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL181t2pp" metaid="_4e19d812-c78a-431b-a118-69204652bfc4" name="fatty_acid_CoA_ligase__octadecenoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4e19d812-c78a-431b-a118-69204652bfc4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ocdcea_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_odecoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPTHpp" metaid="cc7759f9-512e-4135-9b99-a3c70d664f0c" name="R_PPTHpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006010</p> + <p>SUBSYSTEM: Nucleotides_degradation</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cc7759f9-512e-4135-9b99-a3c70d664f0c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006010"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ppt_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RBFSb" metaid="e3ead820-9549-47da-8f2e-b7b2d114056b" name="riboflavin_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009760</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e3ead820-9549-47da-8f2e-b7b2d114056b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009760"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dmlz_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ribflv_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4r5au_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_ni2_e" metaid="e41c8663-235b-4f95-b953-a39c06455791" name="R_EX_ni2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e41c8663-235b-4f95-b953-a39c06455791"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_ni2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MECDPS" metaid="_7bbec3fd-1e0b-4758-95bf-4186e227c611" name="2_C_methyl_D_erythritol_2_4_cyclodiphosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022190</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.6.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7bbec3fd-1e0b-4758-95bf-4186e227c611"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.6.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022190"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2p4c2me_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2mecdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OXOGAH" metaid="_148cbb5c-87ce-48fd-80c2-b6eb893a5bc2" name="R_OXOGAH" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005030</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 3.5.1.111</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_148cbb5c-87ce-48fd-80c2-b6eb893a5bc2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.111"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2ogm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_6PDDGLUCA" metaid="aabd4ea8-d600-4f18-98d7-23aadf0eab7f" name="6_phospho_5_dehydro_2_deoxy_D_gluconate_aldolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 4.1.2.29</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#aabd4ea8-d600-4f18-98d7-23aadf0eab7f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.29"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_6pddgluc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_msa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS181pp" metaid="_5aebb49f-ce41-48b5-abac-a2d8f4ec0c5d" name="cardiolipin_synthase__periplasmic__n_C18_1_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5aebb49f-ce41-48b5-abac-a2d8f4ec0c5d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pg181_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_clpn181_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HMBS" metaid="_464f1d0a-4d4a-4d95-95d5-4d7134b70ca8" name="hydroxymethylbilane_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018480</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.61</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_464f1d0a-4d4a-4d95-95d5-4d7134b70ca8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.61"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppbng_c" stoichiometry="4"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hmbil_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="4"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RBFSa" metaid="aefd8b19-116a-4449-8353-ad4f3ae9953a" name="riboflavin_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009780</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#aefd8b19-116a-4449-8353-ad4f3ae9953a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009780"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_db4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4r5au_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dmlz_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CU2tpp" metaid="_6e01cc85-1914-4f02-916d-8d6a5976fbb8" name="copper_transport_in_via_permease__no_H__" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6e01cc85-1914-4f02-916d-8d6a5976fbb8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cu2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cu2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LIPAabcpp" metaid="_9ca89924-0cf9-4d37-98d9-9597dc5d2f52" name="R_LIPAabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9ca89924-0cf9-4d37-98d9-9597dc5d2f52"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_kdo2lipidA_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo2lipidA_XF_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PAPSR2" metaid="_94d14f04-db64-4886-9e29-e7c1d808685f" name="R_PAPSR2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_002720 AND XFCFBP8418_012410 ) OR ( XFCFBP8418_002720 AND XFCFBP8418_013020 ) OR ( XFCFBP8418_002720 AND XFCFBP8418_021660 ) OR ( or )</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 1.8.4.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_94d14f04-db64-4886-9e29-e7c1d808685f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.4.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012410"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021660"/> + </fbc:and> + <fbc:geneProductRef fbc:geneProduct="or"/> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013020"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_paps_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pap_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_so3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HXPRT" metaid="e06109e7-8772-41b8-97c4-aad71904ef31" name="hypoxanthine_phosphoribosyltransferase__Hypoxanthine_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021340</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.4.2.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e06109e7-8772-41b8-97c4-aad71904ef31"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hxan_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MTAP" metaid="_3a4a1688-0e11-4ed9-96ac-fb9352ef8b1a" name="R_MTAP" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021330</p> + <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> + <p>EC_NUMBER: 2.4.2.28</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3a4a1688-0e11-4ed9-96ac-fb9352ef8b1a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.28"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021330"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5mta_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ade_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_5mdr1p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP161pp" metaid="ebb9f9f4-9f9d-4cbf-9dd9-d70d2bad7788" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ebb9f9f4-9f9d-4cbf-9dd9-d70d2bad7788"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp161_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg161_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OMPHHX" metaid="d1515964-e28b-41f8-9aaf-420a0992a400" name="2_octaprenyl_6_methoxyphenol_hydroxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010930</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d1515964-e28b-41f8-9aaf-420a0992a400"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2omph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="0.5"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2ombzl_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EDD" metaid="_669cb284-2f5e-4613-bf55-8d2e43585a6b" name="6_phosphogluconate_dehydratase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024710</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 4.2.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_669cb284-2f5e-4613-bf55-8d2e43585a6b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_6pgc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2ddg6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FRUptspp" metaid="_3b1cf144-0566-4f11-a09e-1c5e373c4a7a" name="D_fructose_transport_via_PEP_Pyr_PTS__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3b1cf144-0566-4f11-a09e-1c5e373c4a7a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fru_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_f1p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EDA" metaid="c0c41082-29b9-4aac-8e49-b75631a23d96" name="2_dehydro_3_deoxy_phosphogluconate_aldolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024720</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 4.1.2.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c0c41082-29b9-4aac-8e49-b75631a23d96"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024720"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2ddg6p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM4Pt2pp" metaid="cd579a5d-365c-4fdc-8ab1-8c1302bed8f1" name="GlcNAc_anhMurNAc_tetrapeptide_transport_in_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015550</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cd579a5d-365c-4fdc-8ab1-8c1302bed8f1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROT_LesA_BioS" metaid="cbdde19f-0825-4050-8f2c-5a4159aa0680" name="R_PROT_LesA_BioS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011400</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cbdde19f-0825-4050-8f2c-5a4159aa0680"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011400"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asptrna_c" stoichiometry="23"/> + <speciesReference constant="true" species="M_glutrna_c" stoichiometry="17"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1997.72"/> + <speciesReference constant="true" species="M_asntrna_c" stoichiometry="37"/> + <speciesReference constant="true" species="M_phetrna_c" stoichiometry="22"/> + <speciesReference constant="true" species="M_glytrna_c" stoichiometry="59"/> + <speciesReference constant="true" species="M_glntrna_c" stoichiometry="34"/> + <speciesReference constant="true" species="M_cystrna_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_trptrna_c" stoichiometry="11"/> + <speciesReference constant="true" species="M_protrna_c" stoichiometry="28"/> + <speciesReference constant="true" species="M_valtrna_c" stoichiometry="25"/> + <speciesReference constant="true" species="M_sertrna_c" stoichiometry="47"/> + <speciesReference constant="true" species="M_argtrna_c" stoichiometry="21"/> + <speciesReference constant="true" species="M_thrtrna_c" stoichiometry="63"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1997.72"/> + <speciesReference constant="true" species="M_alatrna_c" stoichiometry="60"/> + <speciesReference constant="true" species="M_iletrna_c" stoichiometry="29"/> + <speciesReference constant="true" species="M_lystrna_c" stoichiometry="15"/> + <speciesReference constant="true" species="M_leutrna_c" stoichiometry="58"/> + <speciesReference constant="true" species="M_mettrna_c" stoichiometry="7"/> + <speciesReference constant="true" species="M_tyrtrna_c" stoichiometry="28"/> + <speciesReference constant="true" species="M_histrna_c" stoichiometry="14"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_trnahis_c" stoichiometry="14"/> + <speciesReference constant="true" species="M_LesA_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaile_c" stoichiometry="29"/> + <speciesReference constant="true" species="M_trnaarg_c" stoichiometry="21"/> + <speciesReference constant="true" species="M_trnathr_c" stoichiometry="63"/> + <speciesReference constant="true" species="M_trnaala_c" stoichiometry="60"/> + <speciesReference constant="true" species="M_trnapro_c" stoichiometry="28"/> + <speciesReference constant="true" species="M_trnamet_c" stoichiometry="7"/> + <speciesReference constant="true" species="M_trnaser_c" stoichiometry="47"/> + <speciesReference constant="true" species="M_trnacys_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_trnaasp_c" stoichiometry="23"/> + <speciesReference constant="true" species="M_trnatrp_c" stoichiometry="11"/> + <speciesReference constant="true" species="M_trnaasn_c" stoichiometry="37"/> + <speciesReference constant="true" species="M_trnagln_c" stoichiometry="34"/> + <speciesReference constant="true" species="M_trnaphe_c" stoichiometry="22"/> + <speciesReference constant="true" species="M_trnatyr_c" stoichiometry="28"/> + <speciesReference constant="true" species="M_trnagly_c" stoichiometry="59"/> + <speciesReference constant="true" species="M_trnaval_c" stoichiometry="25"/> + <speciesReference constant="true" species="M_trnaglu_c" stoichiometry="17"/> + <speciesReference constant="true" species="M_trnaleu_c" stoichiometry="58"/> + <speciesReference constant="true" species="M_trnalys_c" stoichiometry="15"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1997.72"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1997.72"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AMPTASECG" metaid="_9c0dc877-c529-45e2-ab06-fabb4fc1ce55" name="alanyl_aminopeptidase__cys_gly_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002800</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 3.4.11.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9c0dc877-c529-45e2-ab06-fabb4fc1ce55"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.11.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cgly_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NH4tpp" metaid="f64fe1cf-9c3a-49ec-b329-1981fc7ebfe7" name="ammonia_reversible_transport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017690</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f64fe1cf-9c3a-49ec-b329-1981fc7ebfe7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017690"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nh4_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SHCHD2" metaid="_19647eb7-b93d-447a-88e3-c64aa879bebd" name="R_SHCHD2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010970</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.3.1.76</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_19647eb7-b93d-447a-88e3-c64aa879bebd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.76"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010970"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dscl_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_scl_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CU2_bd_CopA" metaid="_14797287-fd1a-4dfc-b300-9daffa59e830" name="Copper_sequestration_by_cop_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015250</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_14797287-fd1a-4dfc-b300-9daffa59e830"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cu2_p" stoichiometry="11"/> + <speciesReference constant="true" species="M_CopA_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_11cu2s_CopA_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THBPTD" metaid="_8622fea6-35d5-4e81-9aef-5a66f3939348" name="R_THBPTD" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012500</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.96</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8622fea6-35d5-4e81-9aef-5a66f3939348"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.96"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012500"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thbpt4acam_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dhbpt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYt2pp" metaid="_7f478a86-dcba-4b43-bdfa-bf36dbd733b1" name="R_GLYt2pp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7f478a86-dcba-4b43-bdfa-bf36dbd733b1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gly_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LPSabctpp" metaid="_458e980d-70fa-448b-ac26-8d00fb518e9a" name="Oantigen_core_kdo_lipidA_Ralstonia_solanacearum_specific_LPS_transport_via_ABC_system_periplasm_to_extracellular_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_458e980d-70fa-448b-ac26-8d00fb518e9a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_OLPS_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_OLPS_XF_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EDTXS1XF" metaid="cfeb2f99-37cd-4276-ac54-5a875d5bdb62" name="R_EDTXS1XF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004060 ) OR ( XFCFBP8418_015020 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.-</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cfeb2f99-37cd-4276-ac54-5a875d5bdb62"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.-"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004060"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015020"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hddecACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo2lipid4_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_kdo2lipid4HL_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SERAT" metaid="f5fb0f47-8e33-4507-9a9b-1ff077874e4e" name="serine_O_acetyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 2.3.1.30</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f5fb0f47-8e33-4507-9a9b-1ff077874e4e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.30"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acser_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPND" metaid="ac05b5bb-aec3-4b65-899f-cd0db43b95f1" name="prephenate_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021200</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 1.3.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ac05b5bb-aec3-4b65-899f-cd0db43b95f1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021200"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pphn_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_34hpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GK1" metaid="_64b44538-0b98-4e14-9b37-8a43ee722e14" name="guanylate_kinase__GMP_ATP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002650</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_64b44538-0b98-4e14-9b37-8a43ee722e14"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LEUabcpp" metaid="_2f7463c0-9137-4d02-a616-6b7f9216f12f" name="L_leucine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2f7463c0-9137-4d02-a616-6b7f9216f12f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_leu_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_leu_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR100" metaid="_7c30b382-8242-4ab9-bd3e-8a33ee49fe78" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C10_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7c30b382-8242-4ab9-bd3e-8a33ee49fe78"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3odecACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hdecACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA120" metaid="dd342e79-834f-45bb-b41c-ea27503d1749" name="Phosphatidylglycerol_synthase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dd342e79-834f-45bb-b41c-ea27503d1749"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdddecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp120_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT181" metaid="e2a02f7a-7ed8-4efb-a6f8-c77334a40727" name="R_G3PAT181" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e2a02f7a-7ed8-4efb-a6f8-c77334a40727"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_octeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_1odec11eg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDP" metaid="a30b4cb1-c39f-485d-b604-4468b4e83d36" name="thiamin_pyrophosphatase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003250</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.6.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a30b4cb1-c39f-485d-b604-4468b4e83d36"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thmpp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thmmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE2abcpp" metaid="ee7de55c-cb84-47e5-97b0-5eb5fa96d008" name="iron__II__transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009910</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ee7de55c-cb84-47e5-97b0-5eb5fa96d008"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ABUTt2pp" metaid="_0873f427-e010-46ae-a840-180cb283a6e9" name="4_aminobutyrate_transport_in_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0873f427-e010-46ae-a840-180cb283a6e9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4abut_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4abut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADCL" metaid="_421e0e7b-eb65-4739-b2eb-75149316d48e" name="R_ADCL" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014810</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.3.38</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_421e0e7b-eb65-4739-b2eb-75149316d48e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.3.38"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4adcho_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4abz_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MSO3tex" metaid="bd3c6ae0-56d8-4f23-987a-2cb585fdf959" name="methanesulfonate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007680 ) OR ( XFCFBP8418_009840 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bd3c6ae0-56d8-4f23-987a-2cb585fdf959"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009840"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mso3_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mso3_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DDGLK" metaid="_5fbef3c5-b93b-4d9c-984d-f6e1c4771e76" name="2_dehydro_3_deoxygluconokinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018640</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.45</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5fbef3c5-b93b-4d9c-984d-f6e1c4771e76"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.45"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018640"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2ddglcn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2ddg6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PStex" metaid="_05abaed6-9268-45a3-a535-ae3145a6cf90" name="glycerophosphserine_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_05abaed6-9268-45a3-a535-ae3145a6cf90"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g3ps_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3ps_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DNMPPA" metaid="d68c6357-31ae-4f64-b842-d623ff70f374" name="R_DNMPPA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d68c6357-31ae-4f64-b842-d623ff70f374"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhpmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dhnpt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OCTDPS" metaid="_7b300b6d-9a30-4887-843a-eaf6b31bb960" name="Octaprenyl_pyrophosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003680</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.90</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7b300b6d-9a30-4887-843a-eaf6b31bb960"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.90"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_frdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ipdp_c" stoichiometry="5"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_octdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="5"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT180" metaid="_38af430f-3a01-4373-8d04-5804967f5bee" name="R_G3PAT180" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_38af430f-3a01-4373-8d04-5804967f5bee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ocdcaACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_1odecg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADCS" metaid="ffa3c12c-7325-455c-98a8-f7a8129c38bf" name="4_amino_4_deoxychorismate_synthase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026740 AND XFCFBP8418_026750</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.6.1.85</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ffa3c12c-7325-455c-98a8-f7a8129c38bf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.85"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026750"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026740"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_chor_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4adcho_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CAT" metaid="fa3bfb33-f625-44fa-871f-05e8405fde85" name="catalase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020430</p> + <p>SUBSYSTEM: Superoxide_radicals_degradation</p> + <p>EC_NUMBER: 1.11.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fa3bfb33-f625-44fa-871f-05e8405fde85"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.11.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020430"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDCP1pp" metaid="_6de2d860-2eac-437b-98f7-61ce1498d5ea" name="murein_D_D_carboxypeptidase__murein5px4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_018620 ) OR ( XFCFBP8418_020420 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.16.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6de2d860-2eac-437b-98f7-61ce1498d5ea"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.16.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5px4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4px4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PIabcpp" metaid="_9b5da76b-7854-44f0-bb9b-bd39c77a57b5" name="sn_glycerol_3_phosphoethanolamine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9b5da76b-7854-44f0-bb9b-bd39c77a57b5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g3pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRA2r" metaid="_20397b20-c6a8-4d60-ab1f-8c57d84dbfd5" name="R_THRA2r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 4.1.2.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_20397b20-c6a8-4d60-ab1f-8c57d84dbfd5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_athr_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acald_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA140abcpp" metaid="_73451555-2031-45ca-8d40-f38b9705fd4c" name="phosphatidate_transport_via_ABC_system__n_C14_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_73451555-2031-45ca-8d40-f38b9705fd4c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pa140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa140_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NADPPPS" metaid="_8642b33f-f57f-4f89-bf54-a52a7bba4577" name="R_NADPPPS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8642b33f-f57f-4f89-bf54-a52a7bba4577"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GF6PTAr" metaid="_55795965-f6a5-4dfd-9b76-36e12c5fb995" name="Glutamine_fructose_6_phosphate_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015350</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.6.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_55795965-f6a5-4dfd-9b76-36e12c5fb995"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015350"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gam6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE181abcpp" metaid="d46ef64c-487c-497d-8283-03e2e7a2d0ac" name="phosphatidylethanolamine_transport_via_ABC_system__n_C18_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d46ef64c-487c-497d-8283-03e2e7a2d0ac"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe181_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GALU" metaid="_544cd7d9-e0e5-4a34-b011-adef2e62a0c5" name="UTP_glucose_1_phosphate_uridylyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004800</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_544cd7d9-e0e5-4a34-b011-adef2e62a0c5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OHPHM" metaid="_4a26de74-3974-41fa-b3f6-bcec426c17ad" name="2_octaprenyl_6_hydroxyphenol_methylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005180</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.1.1.222</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4a26de74-3974-41fa-b3f6-bcec426c17ad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.222"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2ohph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2omph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ahcys_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_orn_e" metaid="_088ee4bb-574c-4b38-a9c4-209816251311" name="R_EX_orn_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_088ee4bb-574c-4b38-a9c4-209816251311"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_orn_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GMAND" metaid="de5417ed-2086-4f4b-9e9f-6c417ab0def2" name="GDP_D_mannose_dehydratase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006460</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.47</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#de5417ed-2086-4f4b-9e9f-6c417ab0def2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.47"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006460"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gdpmann_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdpddman_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_asp_L_e" metaid="_76bf29d6-ef42-4e37-92ff-f6a1d3c6af71" name="R_EX_asp_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_76bf29d6-ef42-4e37-92ff-f6a1d3c6af71"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_asp_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PFK" metaid="_06084ea6-8cc7-45f2-a738-c1a406c8b1c5" name="phosphofructokinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026080</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 2.7.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_06084ea6-8cc7-45f2-a738-c1a406c8b1c5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RZ5PP" metaid="ee88117f-9d1b-4189-a13b-519ac6453e68" name="alpha_ribazole_5_phosphate_phosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_016540</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.1.3.73</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ee88117f-9d1b-4189-a13b-519ac6453e68"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.73"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5prdmbz_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_rdmbzi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SHKK" metaid="_2d9d7940-36f9-4f52-b34a-728428042344" name="R_SHKK" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004160</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 2.7.1.71</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2d9d7940-36f9-4f52-b34a-728428042344"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.71"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004160"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_skm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_skm5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ILETRS" metaid="_7a91f907-41a1-4510-9097-94a0db7c8bd8" name="Isoleucyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004680</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7a91f907-41a1-4510-9097-94a0db7c8bd8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnaile_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ile_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iletrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OAADC" metaid="_76151d46-e9d6-4024-8dab-ff726b55cd2d" name="oxaloacetate_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024720</p> + <p>SUBSYSTEM: Pyruvate_Metabolism</p> + <p>EC_NUMBER: 4.1.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_76151d46-e9d6-4024-8dab-ff726b55cd2d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024720"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA180" metaid="_111dd9ad-2aa2-4381-b911-a711ed7d11c7" name="Phosphatidylglycerol_synthase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_111dd9ad-2aa2-4381-b911-a711ed7d11c7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdodecg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp180_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CPPPGO" metaid="d2e24363-f133-494a-a677-1b18d8215636" name="coproporphyrinogen_oxidase__O2_required_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014340</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.3.3.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d2e24363-f133-494a-a677-1b18d8215636"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.3.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_cpppg3_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pppg9_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SELGTHR3" metaid="_107a69f9-5d98-4b62-a714-dc37ee6216be" name="R_SELGTHR3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_107a69f9-5d98-4b62-a714-dc37ee6216be"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gslnt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_seln_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALATA_L2" metaid="_45b027a6-2c7d-47ef-8c0d-f5acf5c34a3d" name="alanine_transaminase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_45b027a6-2c7d-47ef-8c0d-f5acf5c34a3d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pydx5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyam5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SELGTHR2" metaid="_30c97ae2-cdd1-4bbb-8055-d3664764f4a4" name="R_SELGTHR2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_30c97ae2-cdd1-4bbb-8055-d3664764f4a4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dgslnt_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gslnt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALAALAr" metaid="_24c7b076-cdab-4831-b204-b476262b1791" name="D_alanine_D_alanine_ligase__reversible_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011240</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_24c7b076-cdab-4831-b204-b476262b1791"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_D_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_alaala_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LEUTA" metaid="_05f67c70-fa33-411d-9a41-34703156a6c2" name="leucine_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014480</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.42</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_05f67c70-fa33-411d-9a41-34703156a6c2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.42"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4mop_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_leu_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHORD2" metaid="_3ad623d7-86a9-404a-9bd2-2cf74d4619f3" name="dihydoorotic_acid_dehydrogenase__quinone8_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012210</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 1.3.5.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3ad623d7-86a9-404a-9bd2-2cf74d4619f3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.5.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012210"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhor_S_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_orot_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DALAt2pp" metaid="_1ff9f0b8-ce7a-42a1-90f1-aeae01fbd231" name="D_alanine_transport_in_via_proton_symport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1ff9f0b8-ce7a-42a1-90f1-aeae01fbd231"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK120" metaid="_11033452-cc4c-4650-a396-3d597ed06cd1" name="diacylglycerol_kinase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> + <p>SUBSYSTEM: 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species="M_pa120_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDCP1Bpp" metaid="_5dbd4070-184a-4621-b940-68cfc8ce8556" name="murein_L_D_carboxypeptidase__murein4p4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.17.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5dbd4070-184a-4621-b940-68cfc8ce8556"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein4p4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4p3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOBDtex" metaid="_9770389f-8fa3-4b15-ba1d-935bf3d71dd5" name="molybdate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9770389f-8fa3-4b15-ba1d-935bf3d71dd5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mobd_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mobd_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_h_e" metaid="_6d564f4a-c974-441f-ae92-d03171c99d4d" name="R_EX_h_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6d564f4a-c974-441f-ae92-d03171c99d4d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA181" metaid="_11a1a22d-37be-440a-a711-ec0fe67162bb" name="Phosphatidylglycerol_synthase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_11a1a22d-37be-440a-a711-ec0fe67162bb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdodec11eg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR80x" metaid="_72f99711-8e3b-4cc9-9323-c8aad8721e38" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C8_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_72f99711-8e3b-4cc9-9323-c8aad8721e38"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_toct2eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ocACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AHC" metaid="_0b7de0b5-f401-4d97-8a9f-8eb9522dddab" name="adenosylhomocysteinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024950</p> + <p>SUBSYSTEM: Cystein_Metabolism</p> + <p>EC_NUMBER: 3.3.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0b7de0b5-f401-4d97-8a9f-8eb9522dddab"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.3.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ahcys_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hcys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_cu2_e" metaid="b7507095-bd33-4161-93c4-eaca0ae599dd" name="R_EX_cu2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b7507095-bd33-4161-93c4-eaca0ae599dd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_cu2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA160abcpp" metaid="_9b0428b8-556c-4454-8bc3-b94c8ff0ea25" name="phosphatidate_transport_via_ABC_system__n_C16_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9b0428b8-556c-4454-8bc3-b94c8ff0ea25"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa160_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DTARTD" metaid="_0fb060a3-26e6-4409-8280-0c3cefaeaa6e" name="R_DTARTD" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_016890</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 4.2.1.81</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0fb060a3-26e6-4409-8280-0c3cefaeaa6e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.81"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tartr_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK140" metaid="cc7f6070-3430-47ce-93f0-9c6d4b2f457b" name="diacylglycerol_kinase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.1.107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cc7f6070-3430-47ce-93f0-9c6d4b2f457b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GAMptspp" metaid="e0d5d1a3-ddc8-41b4-856f-377ddf310888" name="R_GAMptspp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e0d5d1a3-ddc8-41b4-856f-377ddf310888"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gam_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gam6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_cl_e" metaid="f8f49550-bbf1-40a3-a701-6d7344888a6b" name="R_EX_cl_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f8f49550-bbf1-40a3-a701-6d7344888a6b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_cl_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ICDHyr2" metaid="f8884270-c678-4594-b521-5da61fd3b43f" name="R_ICDHyr2" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_012420 ) OR ( XFCFBP8418_013290 )</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 1.1.1.42</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f8884270-c678-4594-b521-5da61fd3b43f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.42"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013290"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012420"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_icit_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_osucc_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ICDHyr1" metaid="_3a6f37a3-e30d-4a3b-8d44-13b859c82de6" name="R_ICDHyr1" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012420 AND XFCFBP8418_013290</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 1.1.1.42</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3a6f37a3-e30d-4a3b-8d44-13b859c82de6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.42"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013290"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012420"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_osucc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SULRi" metaid="_9f7fedea-e778-446b-bc21-34963625af49" name="sulfite_reductase__NADPH2_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002700 AND XFCFBP8418_002710</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 1.8.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9f7fedea-e778-446b-bc21-34963625af49"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002710"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002700"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="5"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_so3_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_h2s_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GUAtex" metaid="d24cd184-9dfb-47d8-b10d-348f4fd24257" name="R_GUAtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d24cd184-9dfb-47d8-b10d-348f4fd24257"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gua_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gua_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AP4AHr" metaid="_8d72706a-895d-42d5-a37e-40cccdc2ab26" name="Ap4A_hydrolase__reversible" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019500</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8d72706a-895d-42d5-a37e-40cccdc2ab26"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019500"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ap4a_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TPI" metaid="_125ccb2b-525a-42f5-81b7-02d29f5fb24f" name="triose_phosphate_isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025760</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 5.3.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_125ccb2b-525a-42f5-81b7-02d29f5fb24f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025760"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_gal_e" metaid="ba58e059-2307-4b18-8399-109a35fb43ae" name="R_EX_gal_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ba58e059-2307-4b18-8399-109a35fb43ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_gal_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G1SAT" metaid="_9d7a712e-8036-4241-b97e-2a49121b73fb" name="glutamate_1_semialdehyde_aminotransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019220</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 5.4.3.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9d7a712e-8036-4241-b97e-2a49121b73fb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.3.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019220"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu1sa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5aop_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MALDt2_2pp" metaid="_9d80ccee-607d-48c9-8ca3-0257333fd2c2" name="R_MALDt2_2pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025480</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9d80ccee-607d-48c9-8ca3-0257333fd2c2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mal_D_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_mal_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSCVT" metaid="f2421df1-2a4a-40c2-91e7-b4b36d3cdb64" name="R_PSCVT" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021080</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 2.5.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f2421df1-2a4a-40c2-91e7-b4b36d3cdb64"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_skm5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3psme_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK141" metaid="_97f73aaa-f158-4c0e-aec5-f92f1805f78f" name="diacylglycerol_kinase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.1.107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_97f73aaa-f158-4c0e-aec5-f92f1805f78f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_his_L_e" metaid="_85b6e06f-04c1-444b-ad7e-ed6799502f98" name="R_EX_his_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_85b6e06f-04c1-444b-ad7e-ed6799502f98"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_his_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AIRC3" metaid="ecbfc67d-3b62-4c1b-9c28-271f7d2c6306" name="phosphoribosylaminoimidazole_carboxylase__mutase_rxn_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013040</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 5.44.99.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ecbfc67d-3b62-4c1b-9c28-271f7d2c6306"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.44.99.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013040"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5aizc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5caiz_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA160" metaid="e83a89d6-60a6-4fdf-af63-c21ef4f53c8b" name="Phosphatidylglycerol_synthase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e83a89d6-60a6-4fdf-af63-c21ef4f53c8b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdhdecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp160_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLtex" metaid="_29c0101f-cf5a-4dbb-bfd3-56c9a20ff991" name="chloride__Cl_1__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_29c0101f-cf5a-4dbb-bfd3-56c9a20ff991"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cl_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cl_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA161" metaid="af2c3417-84b9-4d18-b71e-5b21a9c40fbd" name="Phosphatidylglycerol_synthase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#af2c3417-84b9-4d18-b71e-5b21a9c40fbd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdhdec9eg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp161_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADPRDP" metaid="_3dd0ab87-7f08-4cbc-b1eb-776e8b53e3d6" name="ADPribose_diphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015820</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3dd0ab87-7f08-4cbc-b1eb-776e8b53e3d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adprib_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CITt3pp" metaid="_3b77a00f-04d5-425a-b636-33691ff010bf" name="R_CITt3pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3b77a00f-04d5-425a-b636-33691ff010bf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cit_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cit_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK160" metaid="e579cbe8-097c-441e-a6ee-baef4eade8aa" name="diacylglycerol_kinase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.1.107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e579cbe8-097c-441e-a6ee-baef4eade8aa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_12dgr160_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGM" metaid="fdb69f82-0373-429f-807b-f88bbdc5decf" name="phosphoglycerate_mutase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_016460 ) OR ( XFCFBP8418_016540 ) OR ( XFCFBP8418_027800 )</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 5.4.2.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fdb69f82-0373-429f-807b-f88bbdc5decf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016460"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027800"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016540"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2pg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3pg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK161" metaid="_57b3c827-2fa6-4e81-bdb0-6de5f1ef6e6d" name="diacylglycerol_kinase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.1.107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_57b3c827-2fa6-4e81-bdb0-6de5f1ef6e6d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa161_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGL" metaid="_812b8f84-9415-4423-bf06-846d2009b538" name="6_phosphogluconolactonase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024700</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 3.1.1.31</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_812b8f84-9415-4423-bf06-846d2009b538"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.1.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024700"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_6pgl_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_6pgc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FLDR2" metaid="_2953c195-068f-432b-93b0-4f1799543fe8" name="R_FLDR2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_016500 AND XFCFBP9418_023100 ) OR ( XFCFBP8418_027840 AND XFCFBP9418_023100 )</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2953c195-068f-432b-93b0-4f1799543fe8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP9418_023100"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027840"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP9418_023100"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_flxso_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_flxr_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGK" metaid="_949a5780-a027-4b9b-b6cc-7989c5178314" name="phosphoglycerate_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011060</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 2.7.2.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_949a5780-a027-4b9b-b6cc-7989c5178314"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.2.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011060"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3pg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_13dpg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLCt2" metaid="_1faff6b2-1f14-4c76-802e-e8c49a977d16" name="R_GLCt2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018650</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1faff6b2-1f14-4c76-802e-e8c49a977d16"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_glc_D_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glc_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGI" metaid="_26382bd4-e92e-48aa-9edc-9d7820f1cb06" name="glucose_6_phosphate_isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026530</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 5.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_26382bd4-e92e-48aa-9edc-9d7820f1cb06"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026530"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g6p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACALDtex" metaid="d2ea4b50-f902-4a7b-95c2-550da0ba9fa8" name="R_ACALDtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d2ea4b50-f902-4a7b-95c2-550da0ba9fa8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acald_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acald_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FMNAT" metaid="_2bdf44c5-2cb6-4296-9c5d-5dac7b98b1cf" name="FMN_adenylyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004690</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2bdf44c5-2cb6-4296-9c5d-5dac7b98b1cf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004690"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fmn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DDPA" metaid="a2fb8836-002f-4c28-8bc6-8cf23e5bdac7" name="3_deoxy_D_arabino_heptulosonate_7_phosphate_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014390</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 2.5.1.54</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a2fb8836-002f-4c28-8bc6-8cf23e5bdac7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.54"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_e4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2dda7p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGSL" metaid="_73e88ab8-feb4-43b9-8bbf-485162c2718d" name="argininosuccinate_lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025240</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 4.3.2.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_73e88ab8-feb4-43b9-8bbf-485162c2718d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_argsuc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PYRt2rtex" metaid="_068a01f8-c04d-4345-b5f5-d8bf4d8d4c07" name="R_PYRt2rtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_068a01f8-c04d-4345-b5f5-d8bf4d8d4c07"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pyr_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_QUINDH" metaid="aa2efde8-2998-4ec0-9559-7a9ca2a9663c" name="Quinate_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006320</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.282</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#aa2efde8-2998-4ec0-9559-7a9ca2a9663c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.282"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006320"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_quin_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_3dhq_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HSDy" metaid="db1afa15-7d63-44d6-983a-300bb048428d" name="homoserine_dehydrogenase__NADPH_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020380</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#db1afa15-7d63-44d6-983a-300bb048428d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020380"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hom_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_aspsa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGSSr" metaid="_9a2533a8-f05d-4605-871e-87af7ee80f95" name="argininosuccinate_synthase__reversible" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025280</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 6.3.4.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a2533a8-f05d-4605-871e-87af7ee80f95"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025280"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_citr_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_argsuc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDSR2" metaid="c375b01a-4888-4059-b1a1-e8c71408675b" name="R_TDSR2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_006350</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c375b01a-4888-4059-b1a1-e8c71408675b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006350"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dsbgox_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbdrd_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dsbdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbgrd_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PTRCtex" metaid="_5db91d6a-04ad-40cb-b1b5-2848ea4e3112" name="putrescine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5db91d6a-04ad-40cb-b1b5-2848ea4e3112"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ptrc_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ptrc_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_glyc_e" metaid="_303676b7-c2e0-4189-9634-db8aa9abc05b" name="R_EX_glyc_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_303676b7-c2e0-4189-9634-db8aa9abc05b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUSy" metaid="_946e491d-30ef-4d22-a21c-f94daf2b1f67" name="glutamate_synthase__NADPH_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013350 AND XFCFBP8418_013360</p> + <p>SUBSYSTEM: Glutamate_Metabolism_</p> + <p>EC_NUMBER: 1.4.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_946e491d-30ef-4d22-a21c-f94daf2b1f67"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.4.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013360"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013350"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDSR1" metaid="f7f2d2f9-df08-44da-9732-c9e15a1a2499" name="thiol_disulfide_reductase__DsbC_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003390 AND XFCFBP8418_006350</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f7f2d2f9-df08-44da-9732-c9e15a1a2499"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006350"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003390"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dsbcox_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbdrd_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dsbcrd_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbdox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYC2Ptex" metaid="_6abfaec7-5d82-4094-807e-05351db886a4" name="sn_Glycerol_2_phosphate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6abfaec7-5d82-4094-807e-05351db886a4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc2p_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc2p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METtex" metaid="e0857c6d-dcd9-4cf5-b3eb-c3ee4d21708b" name="L_methionine_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e0857c6d-dcd9-4cf5-b3eb-c3ee4d21708b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_met_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_met_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LEUTRS" metaid="_01e8e603-05fa-4f85-aace-eada9cdc28e4" name="Leucyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019710</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01e8e603-05fa-4f85-aace-eada9cdc28e4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnaleu_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_leu_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_leutrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MEOHtrpp" metaid="_9a3cb379-45c8-4d8e-bd23-8f379fc7ff68" name="Methanol_reversible_transport_via_diffusion__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a3cb379-45c8-4d8e-bd23-8f379fc7ff68"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_meoh_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_meoh_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MANtex" metaid="_96653a75-107b-4a14-bcf3-12e782efb8b2" name="R_MANtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_96653a75-107b-4a14-bcf3-12e782efb8b2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_man_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_man_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOX1abcpp" metaid="b96939fb-79ad-441c-a13b-77a4dea207dd" name="R_METSOX1abcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b96939fb-79ad-441c-a13b-77a4dea207dd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_metsox_S_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_metsox_S_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOX2tex" metaid="_5f779722-a885-4f0e-a40c-1f4eb862d134" name="R_METSOX2tex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f779722-a885-4f0e-a40c-1f4eb862d134"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_metsox_R_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_metsox_R_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PEabcpp" metaid="c63ec343-9b0f-4bd1-acdd-4cf5c0d9da79" name="sn_glycerol_3_phosphoethanolamine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c63ec343-9b0f-4bd1-acdd-4cf5c0d9da79"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3pe_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3pe_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR60x" metaid="f98904b1-2fec-4b9d-8d23-1ed5d71a8fff" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C6_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f98904b1-2fec-4b9d-8d23-1ed5d71a8fff"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thex2eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hexACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NI2t3tex" metaid="_0fcc3404-73b7-408c-9516-cf5711a5b2d8" name="R_NI2t3tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0fcc3404-73b7-408c-9516-cf5711a5b2d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ni2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ni2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOPG" metaid="_6c1b1e0c-1214-43dc-ae88-48c6e32c6574" name="R_MOPG" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6c1b1e0c-1214-43dc-ae88-48c6e32c6574"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3c4mop_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4mop_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACS" metaid="f82a531b-3cfb-4432-a2a9-fc2b1ea7a29b" name="acetyl_CoA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020630</p> + <p>SUBSYSTEM: Pyruvate_Metabolism</p> + <p>EC_NUMBER: 6.2.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f82a531b-3cfb-4432-a2a9-fc2b1ea7a29b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE60" metaid="f3b291e6-d971-4169-8526-c6cc47f9af28" name="R_FACOAE60" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f3b291e6-d971-4169-8526-c6cc47f9af28"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hxcoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hxa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TKT2" metaid="a875eaae-aebe-409c-bfb2-26d163f234fb" name="transketolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000640</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 2.2.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a875eaae-aebe-409c-bfb2-26d163f234fb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.2.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000640"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_xu5p_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_e4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHDPS" metaid="b5cb189a-d585-442f-bd55-649ff74e2a26" name="dihydrodipicolinate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009670</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 4.3.3.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b5cb189a-d585-442f-bd55-649ff74e2a26"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.3.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009670"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_aspsa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_23dhdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TKT1" metaid="e836e051-ab3f-4c80-bc79-1cc08254d046" name="transketolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000640</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 2.2.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e836e051-ab3f-4c80-bc79-1cc08254d046"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.2.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000640"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_xu5p_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_s7p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PHETA1" metaid="_87ac1595-703b-4256-851b-cbf43c1556dd" name="phenylalanine_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014480</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.58</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_87ac1595-703b-4256-851b-cbf43c1556dd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.58"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phe_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phpyr_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE100" metaid="_6b0eb87a-7795-4f00-b3ef-190b2a0ad83c" name="R_FACOAE100" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6b0eb87a-7795-4f00-b3ef-190b2a0ad83c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dcacoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dca_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_4PEPTabcpp" metaid="_3d8f4895-48d4-4116-bfd5-088e7038a524" name="tetrapeptide__LalaDgluMdapDala__transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004070 ) OR ( XFCFBP8418_004550 ) OR ( XFCFBP8418_007680 ) OR ( XFCFBP8418_010500 ) OR ( XFCFBP8418_013240 ) OR ( XFCFBP8418_019450 ) OR ( XFCFBP8418_022120 ) OR ( XFCFBP8418_024570 ) OR ( XFCFBP8418_024670 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d8f4895-48d4-4116-bfd5-088e7038a524"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019450"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024570"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013240"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdapDala_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdapDala_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HMPK1" metaid="ef3008e2-953d-4543-82a4-ec97725519db" name="hydroxymethylpyrimidine_kinase__ATP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006340</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.1.49</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ef3008e2-953d-4543-82a4-ec97725519db"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.49"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4ahmmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4ampm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DKMPPD" metaid="ccd90c3a-41ed-419a-a0bb-2b355bea1754" name="R_DKMPPD" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ccd90c3a-41ed-419a-a0bb-2b355bea1754"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dkmpp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2kmb_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PSabcpp" metaid="e0e6c33a-04e0-41d4-83a0-8545aa8b6f66" name="sn_glycerol_3_phosphoserine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e0e6c33a-04e0-41d4-83a0-8545aa8b6f66"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3ps_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3ps_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HDCAtex" metaid="_5ccf13a2-dbfe-4669-80a1-7789fd33b591" name="Hexadecanoate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ccf13a2-dbfe-4669-80a1-7789fd33b591"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hdca_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hdca_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_VALTA" metaid="ab3fe1bd-a74c-4e17-bb7d-2b5c861e2a13" name="valine_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001240</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.42</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ab3fe1bd-a74c-4e17-bb7d-2b5c861e2a13"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.42"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_val_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3mob_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPCDC" metaid="ed9df163-5291-41cb-ac95-96c5bba691c7" name="phosphopantothenoylcysteine_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015430</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.1.36</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ed9df163-5291-41cb-ac95-96c5bba691c7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.36"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015430"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4ppcys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pan4p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYCLTt4pp" metaid="c88ac52f-c624-4690-8e64-f51c7cf6aabe" name="glycolate_transport_via_sodium_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020610</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c88ac52f-c624-4690-8e64-f51c7cf6aabe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020610"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyclt_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_na1_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_na1_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyclt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NI2t3pp" metaid="_1e4068e5-51d7-4fd8-a4f4-8dd61624331a" name="nickle__Ni_2__transport_out_via_proton_antiport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010570</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1e4068e5-51d7-4fd8-a4f4-8dd61624331a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ni2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ni2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2O2tpp" metaid="_00f62093-9dbf-428f-bb5f-36cc0c95c0c9" name="hydrogen_peroxide_transport_via_diffusion__periplasm_to_cytoplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_00f62093-9dbf-428f-bb5f-36cc0c95c0c9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PDH" metaid="_89f5fa23-9fb3-4857-9262-2dff6e554c93" name="pyruvate_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005940 AND XFCFBP8418_010550 AND XFCFBP8418_010560</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_89f5fa23-9fb3-4857-9262-2dff6e554c93"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010550"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010560"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TYRTA" metaid="_1a0f1f58-e6e3-42cf-8c76-5029730e45d4" name="tyrosine_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_014480 ) OR ( XFCFBP8418_020310 )</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.57</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1a0f1f58-e6e3-42cf-8c76-5029730e45d4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.57"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020310"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014480"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tyr_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_34hpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTHP" metaid="ed1c2ad2-b573-4550-aaa1-556818013dc1" name="glutathione_peroxidase__c_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010100</p> + <p>SUBSYSTEM: Superoxide_radicals_degradation</p> + <p>EC_NUMBER: 1.11.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ed1c2ad2-b573-4550-aaa1-556818013dc1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.11.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gthox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTHS" metaid="_2f3ecbc8-470c-4eb7-9768-26bab3a42633" name="glutathione_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000840</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2f3ecbc8-470c-4eb7-9768-26bab3a42633"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glucys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR180" metaid="_68542414-bf2e-46a6-944f-0ee32746eb97" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_68542414-bf2e-46a6-944f-0ee32746eb97"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3ooctdACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hoctaACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR181" metaid="_5f0f1a76-1f64-4e0f-a45f-242afa43424e" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f0f1a76-1f64-4e0f-a45f-242afa43424e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ocvac11eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hcvac11eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_E4PD" metaid="_89a7a200-7abe-4471-bcd7-a5c482b3e7d8" name="Erythrose_4_phosphate_dehydrogenase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007260</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.2.1.72</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_89a7a200-7abe-4471-bcd7-a5c482b3e7d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.72"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007260"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_e4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_4per_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALKP" metaid="_50f0e00d-d655-43c6-82c6-dcd4a2ea5411" name="R_ALKP" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006010</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.1.3.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_50f0e00d-d655-43c6-82c6-dcd4a2ea5411"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006010"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dha_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UM4PCP" metaid="_82ef8cdc-f8b5-4c23-b88d-60c94ea708d2" name="UDP_N_acetylmuramoyl_L_alanyl_D_gamma_glutamyl_meso_2_6_diaminopimelate_D_alanine_L_D_carboxypeptidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.17.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_82ef8cdc-f8b5-4c23-b88d-60c94ea708d2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_um4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ugmd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AKGDH" metaid="_7c11985a-84f0-4221-bf6f-e2d48fdb05e1" name="2_Oxoglutarate_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002140 AND XFCFBP8418_002150 AND XFCFBP8418_010560</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7c11985a-84f0-4221-bf6f-e2d48fdb05e1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002150"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002140"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010560"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Htex" metaid="_87f9ed1c-6979-4b1d-b0f5-ba4aa7d809be" name="proton_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_87f9ed1c-6979-4b1d-b0f5-ba4aa7d809be"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE80" metaid="a6fe5fae-c98c-4143-83a3-fa6cc92188e8" name="R_FACOAE80" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a6fe5fae-c98c-4143-83a3-fa6cc92188e8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_occoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_octa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RIBabcpp" metaid="b282077a-1401-46fa-b1d7-a9dd3b808eaa" name="R_RIBabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b282077a-1401-46fa-b1d7-a9dd3b808eaa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_rib_D_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_rib_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HISabcpp" metaid="ba31d6cb-e824-4706-9e51-539ef32f482a" name="L_histidine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004750 ) OR ( XFCFBP8418_022890 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.21</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ba31d6cb-e824-4706-9e51-539ef32f482a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.21"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_his_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_his_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPt2_2tex" metaid="d7e34678-04d4-4e7a-8de6-cc6b0eb0f51e" name="R_ASPt2_2tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d7e34678-04d4-4e7a-8de6-cc6b0eb0f51e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_asp_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IZPN" metaid="_5f616904-a689-4932-ac44-22ad74389bd9" name="imidazolonepropionase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 3.5.2.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f616904-a689-4932-ac44-22ad74389bd9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.2.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4izp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_forglu_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ENO" metaid="_179a44bc-7464-4c08-a043-29d4c2ba14ef" name="enolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022220</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 4.2.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_179a44bc-7464-4c08-a043-29d4c2ba14ef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022220"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2pg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CO2tex" metaid="_809d6c35-a3db-4775-a2fd-48eafb45eb30" name="CO2_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_809d6c35-a3db-4775-a2fd-48eafb45eb30"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_co2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PERD" metaid="_76242408-fe56-48c6-ba35-5e36fd9d74d9" name="Erythronate_4_phosphate__4per__dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.290</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_76242408-fe56-48c6-ba35-5e36fd9d74d9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.290"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4per_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ohpb_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDPXYLS" metaid="_9b1ab803-476c-47f6-b5d0-6bab0d1c3d9d" name="UDP_xylose_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020820</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.1.1.35</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9b1ab803-476c-47f6-b5d0-6bab0d1c3d9d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.35"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp4kp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpxyl_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSTGL" metaid="c92731bb-f621-47fa-b53b-f050ea82b7b7" name="R_CYSTGL" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010590</p> + <p>SUBSYSTEM: Cystein_Metabolism</p> + <p>EC_NUMBER: 4.4.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c92731bb-f621-47fa-b53b-f050ea82b7b7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.4.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cyst_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2obut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUCtpp" metaid="_34363cfc-fa7f-4df4-a073-49f5befcdf50" name="R_FUCtpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018650</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_34363cfc-fa7f-4df4-a073-49f5befcdf50"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_fuc_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fuc_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE120" metaid="_2691931b-9cfe-40d9-95d9-13e4ed057413" name="R_FACOAE120" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2691931b-9cfe-40d9-95d9-13e4ed057413"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ddcacoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ddca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + </listOfReactions> + </model> +</sbml>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/attributes/GetGenesFromReactions/test-data/XF_network_R_Seed.tab Fri Jul 29 13:23:40 2022 +0000 @@ -0,0 +1,2 @@ +R_ACGS +R_GLUN
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/attributes/GetReactantsFromReactions/GetReactantsFromReactions.xml Fri Jul 29 13:23:40 2022 +0000 @@ -0,0 +1,75 @@ +<?xml version="1.0" encoding="UTF-8"?> +<tool id="met4j_GetReactantsFromReactions" name="GetReactantsFromReactions" version="1.1.0"> + <description>Get reactants lists from a list of reactions and a GSMN.</description> + <xrefs> + <xref type="bio.tools">met4j</xref> + </xrefs> + <requirements> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> + </requirements> + <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.GetReactantsFromReactions -i "$sbml" + -r "$reactionFile" +#if str($sep): + -sep "$sep" +#end if + $hasHeader +#if str($i) != 'nan': + -col "$i" +#end if + $printSubstrates + $printProducts + -o "$outputFile" +]]></command> + <inputs> + <param argument="-i" format="sbml" label="Input SBML file" name="sbml" optional="false" type="data" value=""/> + <param argument="-r" format="tsv" label="Input Reaction file" name="reactionFile" optional="false" type="data" value=""/> + <param argument="-sep" label="Separator in reaction file" name="sep" optional="true" type="text" value="	"> + <sanitizer invalid_char="_"> + <valid initial="string.printable"/> + </sanitizer> + </param> + <param argument="-header" checked="false" falsevalue="" label="Skip reaction file header" name="hasHeader" truevalue="-header" type="boolean" value="false"/> + <param argument="-col" label="Column number in reaction file (first as 1)" name="i" optional="true" type="integer" value="1"/> + <param argument="-s" checked="false" falsevalue="" label="Extract substrates only" name="printSubstrates" truevalue="-s" type="boolean" value="false"/> + <param argument="-p" checked="false" falsevalue="" label="Extract products only" name="printProducts" truevalue="-p" type="boolean" value="false"/> + </inputs> + <outputs> + <data format="tsv" name="outputFile"/> + </outputs> + <tests> + <test> + <param name="sbml" value="XF_network.sbml"/> + <param name="reactionFile" value="XF_network_R_Seed.tab"/> + <output ftype="tsv" name="outputFile"> + <assert_contents> + <has_text_matching expression="R_GLUN" n="4"/> + <has_text_matching expression="R_ACGS" n="5"/> + </assert_contents> + </output> + </test> + <test> + <param name="sbml" value="XF_network.sbml"/> + <param name="reactionFile" value="XF_network_R_Seed.tab"/> + <param name="printSubstrates" value="true"/> + <output ftype="tsv" name="outputFile"> + <assert_contents> + <has_text_matching expression="R_GLUN" n="2"/> + <has_text_matching expression="R_ACGS" n="5"/> + </assert_contents> + </output> + </test> + <test> + <param name="sbml" value="XF_network.sbml"/> + <param name="reactionFile" value="XF_network_R_Seed.tab"/> + <param name="printProducts" value="true"/> + <output ftype="tsv" name="outputFile"> + <assert_contents> + <has_text_matching expression="R_GLUN" n="2"/> + <has_text_matching expression="R_ACGS" n="5"/> + </assert_contents> + </output> + </test> + </tests> + <help><![CDATA[Get reactants lists from a list of reactions and a GSMN. Output a tab-separated file with one row per reactant, reaction identifiers in first column, reactant identifiers in second column. It can provides substrates, products, or both (by default). In the case of reversible reactions, all reactants are considered both substrates and products]]></help> + <citations/> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/attributes/GetReactantsFromReactions/test-data/XF_network.sbml Fri Jul 29 13:23:40 2022 +0000 @@ -0,0 +1,47267 @@ +<?xml version="1.0" encoding="UTF-8"?> +<sbml fbc:required="false" groups:required="false" level="3" version="2" xmlns="http://www.sbml.org/sbml/level3/version2/core" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1"> + <model fbc:strict="true" id="Xfm1158" metaid="Xfm1158" name="Xfm1158"> + <fbc:listOfGeneProducts> + <fbc:geneProduct fbc:id="XFCFBP8418_007090" fbc:label="XFCFBP8418_007090" fbc:name="XFCFBP8418_007090" metaid="_8a7d7180-d79e-4dbb-86ed-f8d7eb60e698"/> + <fbc:geneProduct fbc:id="XFCFBP8418_005900" fbc:label="XFCFBP8418_005900" fbc:name="XFCFBP8418_005900" metaid="_867487dd-ff57-4e93-8de9-b5ecb805e0eb"/> + <fbc:geneProduct fbc:id="XFCFBP8418_011590" fbc:label="XFCFBP8418_011590" fbc:name="XFCFBP8418_011590" 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xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: MoO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O8P" hasOnlySubstanceUnits="true" id="M_g3pg_c" metaid="_4195cc12-3ead-499a-babc-f43402625ce1" name="Glycerophosphoglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H14O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O" hasOnlySubstanceUnits="true" id="M_h2o_p" metaid="_1d2341b1-a141-4a22-bd62-fa338f7f2346" name="H2O" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O8P" hasOnlySubstanceUnits="true" id="M_g3pg_e" metaid="_2afa5d9d-9d23-45cd-a848-5b2daa9ce630" name="Glycerophosphoglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H14O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaasp_c" metaid="_81402407-ed90-4c32-b133-7c1b5a2e1a6e" name="tRNA_Asp_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Ni" hasOnlySubstanceUnits="true" id="M_ni2_p" metaid="c63ab7cd-3059-44f4-ae8f-9b967625ebca" name="nickel" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Ni</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H74N1O8P1" hasOnlySubstanceUnits="true" id="M_pe160_c" metaid="_59c509d6-1751-4e87-b01c-14cf34ac9b4c" name="phosphatidylethanolamine__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H74N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H31N2O8PRS" hasOnlySubstanceUnits="true" id="M_hexACP_c" metaid="d3d3b718-243e-4d20-b658-13f3bb77c444" name="Hexanoyl_ACP__n_C6_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H31N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="MoO4" hasOnlySubstanceUnits="true" id="M_mobd_c" metaid="cf476b69-9c74-45db-bf2b-145a2fd50ba3" name="Molybdate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: MoO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C77H117N15O40" hasOnlySubstanceUnits="true" id="M_murein5px4p_p" metaid="c53ad754-9f5c-4984-af4c-6b2b5e446284" name="two_disacharide_linked_murein_units__pentapeptide_crosslinked_tetrapeptide__A2pm__D_ala___middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C77H117N15O40</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10O3" hasOnlySubstanceUnits="true" id="M_dmoxpol_c" metaid="beb0eb5d-519f-4b06-8171-7dc4a7d1af7b" name="Dimethoxyphenol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H10O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H74N1O8P1" hasOnlySubstanceUnits="true" id="M_pe160_p" metaid="a44dcca2-66e7-44ae-9186-978f6b1542ba" name="phosphatidylethanolamine__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H74N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Ni" hasOnlySubstanceUnits="true" id="M_ni2_e" metaid="_6949f66e-e627-4fdb-9009-56246e4dc4b0" name="nickel" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Ni</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Ni" hasOnlySubstanceUnits="true" id="M_ni2_c" metaid="_40131acb-4ecf-4acd-af9c-91224f8e4960" name="nickel" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Ni</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9O6" hasOnlySubstanceUnits="true" id="M_3dhq_c" metaid="_89b598af-c5d9-4d78-a32f-886d14936013" name="3_Dehydroquinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H9O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11N3O4P" hasOnlySubstanceUnits="true" id="M_hisp_c" metaid="_406b497f-432f-4b2b-a34a-075cb4a46571" name="L_Histidinol_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11N3O4P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O4" hasOnlySubstanceUnits="true" id="M_23dhmb_c" metaid="_07921bfa-da8f-4679-84dc-9765988d4938" name="R__2_3_Dihydroxy_3_methylbutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N4O9P" hasOnlySubstanceUnits="true" id="M_fprica_c" metaid="_72798c59-4852-475e-a2d5-2e972bc9ac1c" name="5_Formamido_1__5_phospho_D_ribosyl_imidazole_4_carboxamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N4O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15O2" hasOnlySubstanceUnits="true" id="M_octa_p" metaid="_30c3518e-a938-43f3-9051-a3e711f90b51" name="octanoate__n_C8_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H15O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H65N1O10P1" hasOnlySubstanceUnits="true" id="M_ps140_c" metaid="_3aa73b52-633a-48e2-b679-62294e71a142" name="phosphatidylserine__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H65N1O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_man6p_c" metaid="_6a1d6c5a-1a82-48c8-b683-6aaa8bc960f0" name="D_Mannose_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N4O9P" hasOnlySubstanceUnits="true" id="M_5aprbu_c" metaid="_956bb393-be66-4b4b-a4ba-2d429c8bd248" name="5_Amino_6__5__phosphoribitylamino_uracil" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H15N4O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="X" hasOnlySubstanceUnits="true" id="M_dsbdox_c" metaid="_284731a5-c739-47cf-8d77-97ce4a14ed4a" name="fused_thiol_disulfide_interchange_protein__oxidized_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: X</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O13P3" hasOnlySubstanceUnits="true" id="M_atp_c" metaid="_19cd466b-47a4-41ff-8587-533476481886" name="ATP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O13P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5" hasOnlySubstanceUnits="true" id="M_fuc_L_p" metaid="_61db7a7f-c90a-4ce6-bca1-2f069f020836" name="M_fuc_L_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N2O3S" hasOnlySubstanceUnits="true" id="M_btn_e" metaid="_927232ea-6021-48bc-9666-ef542c59560c" name="M_btn_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H15N2O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NOSR" hasOnlySubstanceUnits="true" id="M_cystrna_c" metaid="f79ecc3e-685c-48e1-80dc-e13aa96fbbed" name="L_Cysteinyl_tRNA_Cys_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NOSR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15O2" hasOnlySubstanceUnits="true" id="M_octa_c" metaid="cc6b7289-42de-4e34-8da9-691d9ccc8500" name="octanoate__n_C8_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H15O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N2O3S" hasOnlySubstanceUnits="true" id="M_btn_p" metaid="_749e35e8-ab24-45d7-93ba-1afe7f049832" name="M_btn_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H15N2O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8NO4PS" hasOnlySubstanceUnits="true" id="M_4mpetz_c" metaid="cd921023-9544-4ec4-b121-887e4358d966" name="4_Methyl_5__2_phosphoethyl__thiazole" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H8NO4PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H13N2O2" hasOnlySubstanceUnits="true" id="M_orn_c" metaid="c72afa0a-cfdb-4bcf-ab8d-2d7b74fb2088" name="Ornithine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H13N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NOR" hasOnlySubstanceUnits="true" id="M_valtrna_c" metaid="_4251ba8b-01cc-4752-9443-08cef24bdb93" name="L_Valyl_tRNA_Val_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NOR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnagly_c" metaid="_9c1bcdbe-60da-4ece-bd5a-0a9bf30c26b0" name="tRNA_Gly_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H13N2O2" hasOnlySubstanceUnits="true" id="M_orn_e" metaid="_86686940-58f7-40a6-b87b-9bcfb66c59e9" name="Ornithine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H13N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H36N7O19P3S" hasOnlySubstanceUnits="true" id="M_malcoame_c" metaid="_1052078b-3eba-478d-9087-7b7e0e161b42" name="malonyl_CoA_methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H36N7O19P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O" hasOnlySubstanceUnits="true" id="M_h2o_e" metaid="e11a6b2b-0b7e-4a36-8a04-0af722bbf9c1" name="H2O" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H32N4O4" hasOnlySubstanceUnits="true" id="M_ppp9_c" metaid="d533814d-ad29-4c19-8387-463c4c6fa319" name="Protoporphyrin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H32N4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2" hasOnlySubstanceUnits="true" id="M_co2_e" metaid="_3421dea5-b95e-4be2-b898-7349691945a2" name="Carbon_dioxide_CO2" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O" hasOnlySubstanceUnits="true" id="M_h2o_c" metaid="ba40bb8c-cf64-404e-9faa-1c5435e09c2c" name="H2O" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N2O3S" hasOnlySubstanceUnits="true" id="M_btn_c" metaid="e34048c3-50fa-419d-9e5d-ac985f6fdf30" name="Biotin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H15N2O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2" hasOnlySubstanceUnits="true" id="M_co2_c" metaid="_7f7c8e07-16ce-490f-b701-6cfb7edd1cc5" name="Carbon_dioxide_CO2" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O8P" hasOnlySubstanceUnits="true" id="M_cmp_c" metaid="ce3a8631-3514-4927-a5fc-9266053df778" name="CMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N3O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N2O5" hasOnlySubstanceUnits="true" id="M_sucorn_c" metaid="_49eee4fa-a32f-4d62-99a1-a758a3e171b8" name="M_sucorn_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H15N2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11O7P" hasOnlySubstanceUnits="true" id="M_2me4p_c" metaid="_74b04e95-84b3-4aab-94da-f8858bd56b44" name="2_C_methyl_D_erythritol_4_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C107H177N29O29S2" hasOnlySubstanceUnits="true" id="M_LesA_e" metaid="_795a3dc1-b108-47e4-82da-a966f9204c0e" name="M_LesA_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C107H177N29O29S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H61O13P2" hasOnlySubstanceUnits="true" id="M_pgp141_c" metaid="_7bc2cd0a-2755-4383-9602-b2b68e04de0e" name="Phosphatidylglycerophosphate__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H61O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C107H177N29O29S2" hasOnlySubstanceUnits="true" id="M_LesA_c" metaid="_9a311e5a-f85b-4af7-83b1-307bb1e1a41e" name="M_LesA_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C107H177N29O29S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N10O21P4" hasOnlySubstanceUnits="true" id="M_gp4g_c" metaid="_7f862854-7604-4f31-90ef-06ec0af81a4a" name="P1_P4_Bis_5__guanosyl__tetraphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H24N10O21P4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HSe" hasOnlySubstanceUnits="true" id="M_seln_c" metaid="_7f45bce4-645d-4eb0-a162-61532f8bb480" name="Selenide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HSe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2" hasOnlySubstanceUnits="true" id="M_co2_p" metaid="e3fda4fd-1cd7-4cfc-9921-a79e27f8ce10" name="Carbon_dioxide_CO2" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10O5" hasOnlySubstanceUnits="true" id="M_3c3hmp_c" metaid="_216d7643-f563-44c8-9cd7-6c6f804a68b7" name="3_Carboxy_3_hydroxy_4_methylpentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H66N7O17P3S" hasOnlySubstanceUnits="true" id="M_stcoa_c" metaid="bded8546-6745-4b87-a769-96038f1148b6" name="Stearoyl_CoA__n_C18_0CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H66N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdhdecg_c" metaid="_71e9eef0-13ec-4a15-ae4e-41e4f8012ba2" name="CDP_1_2_dihexadecanoylglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C44H79N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H61O13P2" hasOnlySubstanceUnits="true" id="M_pgp141_p" metaid="f1441528-9bed-4ed1-81d1-40a0e3d45edf" name="Phosphatidylglycerophosphate__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H61O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H12O11P" hasOnlySubstanceUnits="true" id="M_kdo8p_c" metaid="_3870b262-b055-423b-82f9-cceb24028cf0" name="3_Deoxy_D_manno_octulosonate_8_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H12O11P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H21N4O9P" hasOnlySubstanceUnits="true" id="M_fmnh2_c" metaid="fbc52601-3142-4153-a874-df831c3329e3" name="Reduced_FMN" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H21N4O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_f1p_c" metaid="_732925ea-c862-44b5-b095-fc72f48c84c1" name="D_Fructose_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C80H124N16O42" hasOnlySubstanceUnits="true" id="M_murein5p5p_p" metaid="_767502c9-bffc-4038-9454-353c3eec46b5" name="two_linked_disacharide_pentapeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C80H124N16O42</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H63O8P" hasOnlySubstanceUnits="true" id="M_pa161_p" metaid="_859222c2-bac6-476c-aec6-1e01bb937695" name="1_2_dihexadec_9_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H63O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25N2O8PRS" hasOnlySubstanceUnits="true" id="M_but2eACP_c" metaid="e30db6f9-3447-42ac-bfd6-6c005ac804b3" name="But_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H25N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H58N7O17P3S" hasOnlySubstanceUnits="true" id="M_tdcoa_c" metaid="_40b38630-6ac7-4df3-b3d1-b8b6c5937bf9" name="Tetradecanoyl_CoA__n_C14_0CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H58N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C107H177N29O29S2" hasOnlySubstanceUnits="true" id="M_LesA_p" metaid="fab00509-5733-4be1-812b-dcd3bf58f433" name="M_LesA_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C107H177N29O29S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18O11P" hasOnlySubstanceUnits="true" id="M_g3pi_p" metaid="_0c73fa4a-1bce-4d13-84df-e0da19418edc" name="sn_Glycero_3_phospho_1_inositol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H18O11P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H29O7P1" hasOnlySubstanceUnits="true" id="M_1ddecg3p_c" metaid="ecffca5d-e302-4a6b-831c-ea3a5c41242e" name="1_dodecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H29O7P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H63O8P" hasOnlySubstanceUnits="true" id="M_pa161_c" metaid="_435728ef-032c-4a1e-b01c-fa04d674b275" name="1_2_dihexadec_9_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H63O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H76O4" hasOnlySubstanceUnits="true" id="M_q8h2_c" metaid="_4974a112-1b7c-4849-ba38-76daac76671f" name="Ubiquinol_8" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C49H76O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C940H1548N8O661P8" hasOnlySubstanceUnits="true" id="M_core_kdo2lip6_XF_p" metaid="cff7fb8f-ce56-4a84-acd8-a2651d1805c3" name="M_core_kdo2lip6_XF_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C940H1548N8O661P8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="HPO4" hasOnlySubstanceUnits="true" id="M_pi_e" metaid="_42bc2734-835b-4640-9646-02c816f521ca" name="Phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HPO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C71H109N13O39" hasOnlySubstanceUnits="true" id="M_murein4p3p_p" metaid="f8f7d39e-bdaa-4ee9-814d-c0b4ec9160f5" name="two_linked_disacharide_tetrapeptide_and_tripeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C71H109N13O39</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="HPO4" hasOnlySubstanceUnits="true" id="M_pi_p" metaid="_61d6192c-12fb-4874-8564-e8046e4c5c4b" name="Phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HPO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O2" hasOnlySubstanceUnits="true" id="M_ac_p" metaid="_5b78739f-a245-49b5-a6c1-569bfc8d4190" name="Acetate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H3O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H23N5O15P2" hasOnlySubstanceUnits="true" id="M_gdp6dm_c" metaid="f67b76aa-cca5-41d4-aa13-b154bd82377c" name="M_gdp6dm_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H23N5O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaser_c" metaid="_94ef3223-799e-471a-a1c8-613e870c7f5d" name="tRNA_Ser_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18O11P" hasOnlySubstanceUnits="true" id="M_g3pi_c" metaid="fc2173d0-12bd-44f8-89a1-2a39027bfe36" name="sn_Glycero_3_phospho_1_inositol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H18O11P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H27N3O15" hasOnlySubstanceUnits="true" id="M_enter_c" metaid="e0461604-6ffb-422a-b6b7-7b113fa01607" name="M_enter_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H27N3O15</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18O11P" hasOnlySubstanceUnits="true" id="M_g3pi_e" metaid="_4b9027db-81ed-47db-90e0-74b9277095ad" name="sn_Glycero_3_phospho_1_inositol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H18O11P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H27N3O15" hasOnlySubstanceUnits="true" id="M_enter_e" metaid="_5703cd1f-aea5-4cf1-8f7d-5f9cf0f72c8d" name="M_enter_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H27N3O15</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaasn_c" metaid="_1e5964c2-05d7-4d2a-a5b9-dec66466ab0e" name="M_trnaasn_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="R" hasOnlySubstanceUnits="true" id="M_CopA_p" metaid="_12b71ebf-a259-4f49-8429-b7845a88e872" name="Protein_CopA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N6O12S2" hasOnlySubstanceUnits="true" id="M_gthox_c" metaid="c7bf02ef-66b8-4dc1-9026-53fec7f7feee" name="Oxidized_glutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H30N6O12S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C940H1548N8O661P8" hasOnlySubstanceUnits="true" id="M_core_kdo2lip6_XF_c" metaid="_523bd485-6a20-4c1c-ba49-a4bcd8e839f5" name="M_core_kdo2lip6_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C940H1548N8O661P8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C940H1548N8O661P8" hasOnlySubstanceUnits="true" id="M_core_kdo2lip6_XF_e" metaid="_3c4b17e4-1a58-4d30-a679-831996c94151" name="M_core_kdo2lip6_XF_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C940H1548N8O661P8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H27N2O11PRS" hasOnlySubstanceUnits="true" id="M_ogmeACP_c" metaid="_83613f5f-54e6-4465-b92a-7751cae06841" name="3_Oxo_glutaryl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H27N2O11PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaleu_c" metaid="_107bbd4f-b67f-4387-9455-7b833fcf6e1e" name="tRNA_Leu_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnalys_c" metaid="_79f3e812-04d9-429e-be7d-00d183252771" name="tRNA_Lys_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O6P" hasOnlySubstanceUnits="true" id="M_g3p_c" metaid="_2455d675-97e0-427d-80b5-ef339cc6e2ac" name="Glyceraldehyde_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H27N3O15" hasOnlySubstanceUnits="true" id="M_enter_p" metaid="_36d171ac-68e5-47ea-84de-7f657cad5803" name="M_enter_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H27N3O15</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2Se" hasOnlySubstanceUnits="true" id="M_selcys_c" metaid="_2ef535bc-d692-4e1e-9cc9-ce51d614b918" name="M_selcys_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2Se</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O3" hasOnlySubstanceUnits="true" id="M_acorn_c" metaid="_2df9a240-cce3-45d5-92ab-8d8b55b249ba" name="N2_Acetyl_L_ornithine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H14N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HPO4" hasOnlySubstanceUnits="true" id="M_pi_c" metaid="b321ede9-f332-40f5-bd9c-8757e9fae686" name="Phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HPO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N6O12S2" hasOnlySubstanceUnits="true" id="M_gthox_e" metaid="cb7ad6c5-1d9d-46be-985b-1580063ca9d6" name="Oxidized_glutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H30N6O12S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2R" hasOnlySubstanceUnits="true" id="M_sertrna_sec_c" metaid="_813b9900-7e83-4d33-8f58-d813654969ef" name="M_sertrna_sec_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO4" hasOnlySubstanceUnits="true" id="M_achms_c" metaid="_654b6487-592d-4ac2-9d08-f499b6df30b3" name="O_Acetyl_L_homoserine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H21N7O7" hasOnlySubstanceUnits="true" id="M_10fthf_c" metaid="a18c185f-3892-48a6-9c88-b7d7fb0619e6" name="10_Formyltetrahydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H21N7O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32N7O16P3S" hasOnlySubstanceUnits="true" id="M_coa_c" metaid="c9061d98-c8fc-433d-a37f-e984fe545067" name="Coenzyme_A" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H32N7O16P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O2S" hasOnlySubstanceUnits="true" id="M_so2_c" metaid="_20457c4d-2162-49a6-807b-5e5f4d4227af" name="M_so2_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O" hasOnlySubstanceUnits="true" id="M_acald_p" metaid="_3d51ca32-ee50-4913-a791-0c41f0989c06" name="M_acald_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H4O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6NO4" hasOnlySubstanceUnits="true" id="M_2ogm_c" metaid="_5884f0fd-9263-47df-88ea-da40d9d374e3" name="M_2ogm_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H6NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N5O6S" hasOnlySubstanceUnits="true" id="M_amob_c" metaid="_1d835c16-17ae-4d73-93bb-36cb6d93ba15" name="S_Adenosyl_4_methylthio_2_oxobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H19N5O6S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O" hasOnlySubstanceUnits="true" id="M_acald_e" metaid="_0abd461f-9a15-4211-9311-ce43c62aab62" name="M_acald_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H4O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O" hasOnlySubstanceUnits="true" id="M_acald_c" metaid="_143625ae-b64c-4fb0-80f6-9efe13a7b9d0" name="Acetaldehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H4O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8N5O3" hasOnlySubstanceUnits="true" id="M_cph4_c" metaid="afd05253-971f-4a66-8b65-5ac1f306509d" name="6_carboxy_5_6_7_8_tetrahydropterin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H8N5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H24N2O16P2" hasOnlySubstanceUnits="true" id="M_dtdpglu_c" metaid="_0bba1122-5723-4fd3-8f21-e2e91020abec" name="dTDPglucose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H24N2O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O7PS" hasOnlySubstanceUnits="true" id="M_5mdr1p_c" metaid="_184f9078-bb7d-46cf-8a62-b5539976b76d" name="M_5mdr1p_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O7PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H89O7P2" hasOnlySubstanceUnits="true" id="M_udcpdp_c" metaid="ad0e2184-1624-418e-9618-17b79197331f" name="Undecaprenyl_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C55H89O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Mg" hasOnlySubstanceUnits="true" id="M_mg2_c" metaid="_8d2dc306-1ffd-4add-8283-c1b37704bcb9" name="Magnesium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Mg</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H21N7O7" hasOnlySubstanceUnits="true" id="M_5fthf_c" metaid="acdfb364-95bd-4e0e-a46f-f1920c900da7" name="5_Formyltetrahydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H21N7O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hcpalm9eACP_c" metaid="f543c9a3-fd16-4ccb-9272-7617c7a973f0" name="R__3_hydroxy_cis_palm_9_eoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H49N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H82NO8P" hasOnlySubstanceUnits="true" id="M_pe180_c" metaid="_4048579e-4f31-481a-947b-5325a88a525f" name="phosphatidylethanolamine__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C41H82NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="S4Fe4" hasOnlySubstanceUnits="true" id="M_4fe4s_c" metaid="_9b98389e-5f17-43b1-97af-987fda6edd76" name="4Fe_4S__iron_sulfur_cluster" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: S4Fe4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Mg" hasOnlySubstanceUnits="true" id="M_mg2_e" metaid="_6204c224-60fd-496c-ae7d-3a640cf96806" name="Magnesium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Mg</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O5" hasOnlySubstanceUnits="true" id="M_gsn_c" metaid="_675aea4f-9d89-4316-b21d-8835e7bdf088" name="Guanosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N5O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5O" hasOnlySubstanceUnits="true" id="M_gua_p" metaid="bd079a49-4a78-4596-b5a4-e1e2e0ce31a1" name="M_gua_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H5N5O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="S" hasOnlySubstanceUnits="true" id="M_s_c" metaid="_0abe441f-373f-44a8-a346-438e07c487ed" name="M_s_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="S" hasOnlySubstanceUnits="true" id="M_s_e" metaid="_02ce892b-ee70-4605-826f-fac5cfb92aa4" name="M_s_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H23N6O5S" hasOnlySubstanceUnits="true" id="M_amet_c" metaid="_05c3b996-37d0-476c-bd6b-8e86a72850b0" name="S_Adenosyl_L_methionine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H23N6O5S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C800H1302N100O501" hasOnlySubstanceUnits="true" id="M_chitin_polymer_e" metaid="_2f386823-86f0-417b-a5d8-4ddbd63d6fe5" name="M_chitin_polymer_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C800H1302N100O501</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H82NO8P" hasOnlySubstanceUnits="true" id="M_pe180_p" metaid="_4aa176f4-546c-4bce-bbbc-259d7819815a" name="phosphatidylethanolamine__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C41H82NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H12N3O7P" hasOnlySubstanceUnits="true" id="M_air_c" metaid="bafef441-55b1-482a-83ef-2628e0331c85" name="5_amino_1__5_phospho_D_ribosyl_imidazole" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H12N3O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H57N1O10P1" hasOnlySubstanceUnits="true" id="M_ps120_c" metaid="_7286fb91-0c02-49b2-9a94-7e458d73ae30" name="phosphatidylserine__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H57N1O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N2OR" hasOnlySubstanceUnits="true" id="M_lystrna_c" metaid="adb25803-b9e7-4b8b-a860-1b9ffd6ad032" name="L_Lysine_tRNA__Lys_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N2OR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5O" hasOnlySubstanceUnits="true" id="M_gua_e" metaid="b20f58dc-f884-461b-a907-84d41e230386" name="M_gua_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H5N5O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5O" hasOnlySubstanceUnits="true" id="M_gua_c" metaid="_8174d229-a534-4c7b-b1e1-9157c17c78fb" name="Guanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H5N5O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Mg" hasOnlySubstanceUnits="true" id="M_mg2_p" metaid="_3478a092-b7f3-4a06-b4b7-2932b0c98361" name="Magnesium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Mg</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2R" hasOnlySubstanceUnits="true" id="M_tyrtrna_c" metaid="_104ba3cc-a31b-4300-b87d-1d71d75e5eb4" name="L_Tyrosyl_tRNA_Tyr_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11NO2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H20N4O6" hasOnlySubstanceUnits="true" id="M_ribflv_c" metaid="_355d6a80-123c-435c-86bd-93b68e593626" name="Riboflavin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H20N4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H20N2O9PS" hasOnlySubstanceUnits="true" id="M_4ppcys_c" metaid="_2279bafc-1eda-409b-8625-74311a00675d" name="N___R__4_Phosphopantothenoyl__L_cysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H20N2O9PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H65O7P2" hasOnlySubstanceUnits="true" id="M_octdp_c" metaid="_699d66d7-799f-41db-829e-575eb4fd5124" name="all_trans_Octaprenyl_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C40H65O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N6O12S2" hasOnlySubstanceUnits="true" id="M_gthox_p" metaid="_26ddbc66-1814-4d9a-99fa-e789983744f4" name="Oxidized_glutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H30N6O12S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H7N2O3" hasOnlySubstanceUnits="true" id="M_4izp_c" metaid="_35b8c0ec-00e3-478a-8b32-e6ea450f48ca" name="4_Imidazolone_5_propanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H7N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5N4O3" hasOnlySubstanceUnits="true" id="M_cdg_c" metaid="ba9e8d8e-5f5a-4d46-a4eb-ee9bc01d6cc8" name="7_deaza_7_carboxyguanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5N4O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" hasOnlySubstanceUnits="true" id="M_BIOMASS_XF_c" metaid="_977000d3-3f7b-4a5e-9b66-f76349244748" name="M_BIOMASS_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C41.554061837540075H71.78553537948964N9.85382400884015O14.938244017389934P0.8811200258000156R1.27675647831893E-15Mn7.34919E-4Mo7.37685E-6Cl0.005532639K0.207473951Co2.67411E-5Cu7.53361E-4S0.24700915678000002Zn3.62388E-4Mg0.009221064Ni3.43024E-4Ca0.005532639Fe0.017346515399999998</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O6" hasOnlySubstanceUnits="true" id="M_2ins_c" metaid="_18dda0b7-ffe4-4fbe-bea5-0c48a7b1fba9" name="2_Inosose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H10O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H6NO2" hasOnlySubstanceUnits="true" id="M_4abz_c" metaid="c3252fbe-8ecb-4cea-a46e-72ae990ae870" name="4_Aminobenzoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H6NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N5O14P2" hasOnlySubstanceUnits="true" id="M_prbamp_c" metaid="_9b62d40a-b552-45b2-bcaa-e6abfc107cf8" name="1__5_Phosphoribosyl__AMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H19N5O14P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="MoO4" hasOnlySubstanceUnits="true" id="M_mobd_p" metaid="ddf06dd7-4534-41b4-b9f5-4bfa80feb7e8" name="Molybdate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: MoO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O2" hasOnlySubstanceUnits="true" id="M_ac_c" metaid="_9fa08c5e-81e9-4b89-bd09-002a3b6a40a1" name="Acetate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H3O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H89O7P2" hasOnlySubstanceUnits="true" id="M_udcpdp_p" metaid="a5341159-851e-4f2b-8b6c-1a0bef5d110f" name="Undecaprenyl_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C55H89O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O2" hasOnlySubstanceUnits="true" id="M_ac_e" metaid="b8c75f41-aa81-415f-adca-07a804537370" name="Acetate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H3O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O2S" hasOnlySubstanceUnits="true" id="M_mtpp_c" metaid="_5168e61b-5473-429a-af16-459b37a372fa" name="M_mtpp_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H7O2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45N2O9PRS" hasOnlySubstanceUnits="true" id="M_3omrsACP_c" metaid="b6f11f96-e986-4bb4-8cfa-769c56fd0286" name="3_Oxotetradecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H45N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N2O11" hasOnlySubstanceUnits="true" id="M_chtbs_e" metaid="bfff0b3d-04c2-4d68-be9f-36697be6f607" name="N_N_diacetylchitobiose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H28N2O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O5" hasOnlySubstanceUnits="true" id="M_cbasp_c" metaid="_1955851f-53a2-41d8-810e-c6a10d53f245" name="N_Carbamoyl_L_aspartate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H6N2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N2O11" hasOnlySubstanceUnits="true" id="M_chtbs_c" metaid="_95bfee1b-96ad-46c3-ad16-1dec0a80adde" name="N_N_diacetylchitobiose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H28N2O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H20NO6P" hasOnlySubstanceUnits="true" id="M_g3pc_c" metaid="_618ce2bf-2ed0-4cb8-aaa2-7c81d5cc9570" name="sn_Glycero_3_phosphocholine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H20NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69O13P2" hasOnlySubstanceUnits="true" id="M_pgp161_c" metaid="_4c529996-78c3-4952-99e8-fba13ecc8f9f" name="Phosphatidylglycerophosphate__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H69O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="H2S" hasOnlySubstanceUnits="true" id="M_h2s_p" metaid="fae23ffb-3137-4836-bcf0-8783b4e71fdc" name="Hydrogen_sulfide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H20NO6P" hasOnlySubstanceUnits="true" id="M_g3pc_e" metaid="_3a4a7647-cc01-4b46-a0ed-e2caca8ae008" name="sn_Glycero_3_phosphocholine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H20NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23O2" hasOnlySubstanceUnits="true" id="M_ddca_e" metaid="_122ad39f-5de6-42b6-ba49-0c2c3585b9f4" name="Dodecanoate__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H23O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N2O11" hasOnlySubstanceUnits="true" id="M_chtbs_p" metaid="d8376137-fc3d-4416-9fda-76a02f848570" name="N_N_diacetylchitobiose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H28N2O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N2O18P2" hasOnlySubstanceUnits="true" id="M_udpgalur_c" metaid="_3e478232-7397-4d11-856d-df50f0daaac3" name="M_udpgalur_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H19N2O18P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H22N3" hasOnlySubstanceUnits="true" id="M_spmd_e" metaid="ff16cf44-82b1-4346-94e1-245b42443e1a" name="Spermidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H22N3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O3" hasOnlySubstanceUnits="true" id="M_glyc_p" metaid="_6c5d646c-4449-4507-ad71-ba318ebaf4df" name="Glycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H8O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O4" hasOnlySubstanceUnits="true" id="M_dcyt_c" metaid="e43f2edb-9189-4fbb-a1f9-430eb760eae3" name="Deoxycytidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H13N3O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23O2" hasOnlySubstanceUnits="true" id="M_ddca_c" metaid="c682527b-94e1-4c8a-87df-9517957f0965" name="Dodecanoate__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H23O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C68H102N12O37" hasOnlySubstanceUnits="true" id="M_murein3px3p_p" metaid="_476f5504-6060-4a5b-ba42-ea0c14f37e1a" name="two_disacharide_linked_murein_units__tripeptide_crosslinked_tripeptide__A2pm__A2pm___middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C68H102N12O37</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H115N2O30P2" hasOnlySubstanceUnits="true" id="M_kdolipid4_XF_c" metaid="_8f6f558e-3e61-4022-81a0-821f62a0529c" name="M_kdolipid4_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C64H115N2O30P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H22N3" hasOnlySubstanceUnits="true" id="M_spmd_c" metaid="_1bc902f1-27a8-40e4-ac43-2f6dadec93e3" name="Spermidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H22N3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O12P2" hasOnlySubstanceUnits="true" id="M_udp_c" metaid="_886d8581-de18-42c5-b2f3-5bd554ba92bd" name="UDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N2O12P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H53N2O8PRS" hasOnlySubstanceUnits="true" id="M_octeACP_c" metaid="_6fc1220a-b131-4747-81f2-970e39a8f3aa" name="cis_octadec_11_enoyl__acyl_carrier_protein___n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H53N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H3N2O4" hasOnlySubstanceUnits="true" id="M_orot_c" metaid="_9892e8f7-cd75-424c-9921-d2e5441a9bf2" name="Orotate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H3N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H22N3" hasOnlySubstanceUnits="true" id="M_spmd_p" metaid="_88096ddb-8776-4948-a7de-e0cf40e74b5d" name="Spermidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H22N3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N4O2" hasOnlySubstanceUnits="true" id="M_arg_L_c" metaid="_94c434a4-5a34-4449-8db4-853c81a64cc9" name="L_Arginine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N4O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H19N4O9P" hasOnlySubstanceUnits="true" id="M_fmn_c" metaid="_5ad4d4a7-2aa3-47bd-8e30-3d523930f1e9" name="FMN" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H19N4O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H22N4O6" hasOnlySubstanceUnits="true" id="M_rbflvrd_c" metaid="a6e8fe44-0f41-4834-91f6-6edf74df2da0" name="M_rbflvrd_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H22N4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N4O2" hasOnlySubstanceUnits="true" id="M_arg_L_e" metaid="_0c8316dc-3ba0-49d6-a957-aae85d9e7cad" name="L_Arginine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N4O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69O13P2" hasOnlySubstanceUnits="true" id="M_pgp161_p" metaid="a0da53b8-c792-41ba-8484-f4ec21057617" name="Phosphatidylglycerophosphate__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H69O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O3" hasOnlySubstanceUnits="true" id="M_glyc_c" metaid="_9df2aff8-e262-4ebe-9101-31dd63ea3f87" name="Glycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H8O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N5O20P4" hasOnlySubstanceUnits="true" id="M_prbatp_c" metaid="f7a1bbc2-1d49-4a51-969c-3e4ea072aa16" name="1__5_Phosphoribosyl__ATP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H19N5O20P4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O11P2" hasOnlySubstanceUnits="true" id="M_cdp_c" metaid="_12dfc747-9d1d-42fc-8415-cef561969dd8" name="CDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N3O11P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O3" hasOnlySubstanceUnits="true" id="M_glyc_e" metaid="_36ac6ef4-5949-4647-ae8e-7d19fdfdb042" name="Glycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H8O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O4" hasOnlySubstanceUnits="true" id="M_pant_R_c" metaid="ba5bdbf6-327c-4868-bdb6-05e79154bf88" name="R__Pantoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N4O2" hasOnlySubstanceUnits="true" id="M_arg_L_p" metaid="e75fff8e-1303-4870-b151-b37a796d810c" name="L_Arginine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N4O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H62O10P1" hasOnlySubstanceUnits="true" id="M_pg141_c" metaid="_396efca1-3737-4da9-801b-835aba9e0d3b" name="Phosphatidylglycerol__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H62O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H3N2O4" hasOnlySubstanceUnits="true" id="M_orot_p" metaid="f3256e54-e8cb-4076-a633-48b7d04e0753" name="Orotate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H3N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2" hasOnlySubstanceUnits="true" id="M_for_p" metaid="_94e1c75d-9258-432e-a9f0-c5510773ae4b" name="Formate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CHO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="O4S" hasOnlySubstanceUnits="true" id="M_so4_e" metaid="_75423fa7-d028-4ccd-87fd-e54fb68a549e" name="Sulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O4S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5O6" hasOnlySubstanceUnits="true" id="M_2mcacn_c" metaid="_0369c556-1309-46b7-911c-c8ae4028fa9e" name="cis_2_Methylaconitate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H71O8P1" hasOnlySubstanceUnits="true" id="M_pa181_p" metaid="_53a3581f-53a2-4327-bd2e-d961186629d2" name="1_2_dioctadec_11_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H71O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O4S" hasOnlySubstanceUnits="true" id="M_so4_c" metaid="_5d8acb70-ed97-4be9-8bf7-0924b2df4903" name="Sulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O4S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H3N2O4" hasOnlySubstanceUnits="true" id="M_orot_e" metaid="_2a2ef40d-c0e1-43a3-b035-3f8c6aad8341" name="Orotate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H3N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="O4S" hasOnlySubstanceUnits="true" id="M_so4_p" metaid="_0e3610ce-7c67-4912-b48c-247cfa74a857" name="Sulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O4S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="H2S" hasOnlySubstanceUnits="true" id="M_h2s_e" metaid="_2a472705-813d-43ca-bc43-a33f7afca219" name="Hydrogen_sulfide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H2S" hasOnlySubstanceUnits="true" id="M_h2s_c" metaid="ad954544-7662-42d5-800f-2f227ad2acaf" name="Hydrogen_sulfide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H71O8P1" hasOnlySubstanceUnits="true" id="M_pa181_c" metaid="_2726332e-0f8d-4091-a348-94bdb68d7b10" name="1_2_dioctadec_11_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H71O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21O14P" hasOnlySubstanceUnits="true" id="M_tre6p_c" metaid="_1a6fc82e-1e0c-4fc2-99eb-4550d4c85a83" name="alpha_alpha__Trehalose_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H21O14P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O7P" hasOnlySubstanceUnits="true" id="M_dxyl5p_c" metaid="f1d8ed1b-b19b-4fde-8fcd-c8e21723c2b3" name="1_deoxy_D_xylulose_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H62O10P1" hasOnlySubstanceUnits="true" id="M_pg141_p" metaid="_2a7a19c8-9350-4c9e-a897-932010c24e8e" name="Phosphatidylglycerol__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H62O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5" hasOnlySubstanceUnits="true" id="M_ade_p" metaid="_88c0f2d2-4508-4acc-bf5f-a0d5b625e467" name="Adenine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H5N5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O2" hasOnlySubstanceUnits="true" id="M_his_L_p" metaid="d0fff8a7-0697-486a-bf94-43f3a5b74cba" name="L_Histidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9N3O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C63H103O11N1P2" hasOnlySubstanceUnits="true" id="M_f2Nappudp_c" metaid="bb9d8548-b26d-4f7a-b0d4-1f504d604de4" name="M_f2Nappudp_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C63H103O11N1P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_fru_p" metaid="_69c8f14d-d64c-4d8c-9a77-25967c14aa76" name="D_Fructose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H2NO2" hasOnlySubstanceUnits="true" id="M_dhgly_c" metaid="_7254c1c8-5a1c-4d57-8589-aeecd451abfd" name="M_dhgly_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H2NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H66N1O8P1" hasOnlySubstanceUnits="true" id="M_pe140_c" metaid="_8245318c-ed8c-49d2-84fc-e779a60f1962" name="phosphatidylethanolamine__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C33H66N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O2" hasOnlySubstanceUnits="true" id="M_his_L_e" metaid="_8f084f1e-30e1-4cb4-bcb6-460cd5e20606" name="L_Histidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9N3O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O2" hasOnlySubstanceUnits="true" id="M_his_L_c" metaid="_61773072-1fb7-4ec7-ac8f-2390ada500aa" name="L_Histidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9N3O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O12P2" hasOnlySubstanceUnits="true" id="M_fdp_c" metaid="_6ccf20bf-c7be-4f81-a98e-3f4d6b73a91c" name="D_Fructose_1_6_bisphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H10O12P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C111H169N21O59" hasOnlySubstanceUnits="true" id="M_murein4px4p4p_p" metaid="_4cb12875-094c-41d1-94ff-bc20d2e0fbd7" name="three_disacharide_linked_murein_units__tetrapeptide_crosslinked_tetrapeptide__A2pm__D_ala___one_uncrosslinked_tetrapaptide___middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C111H169N21O59</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H73N1O10P1" hasOnlySubstanceUnits="true" id="M_ps160_c" metaid="b76187c5-3735-4406-9f26-251c7ca293bc" name="phosphatidylserine__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H73N1O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H66N1O8P1" hasOnlySubstanceUnits="true" id="M_pe140_p" metaid="bf97d63f-337c-4ba2-a1db-c9d2ed5dfe73" name="phosphatidylethanolamine__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C33H66N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H7O5" hasOnlySubstanceUnits="true" id="M_3dhsk_c" metaid="_041d6376-f95e-45b0-9bdd-fac22a1cf373" name="3_Dehydroshikimate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H7O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14N3O4" hasOnlySubstanceUnits="true" id="M_accitr_c" metaid="b0c01965-2d7a-4351-9104-cb4d34ab2630" name="M_accitr_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H14N3O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O13P3" hasOnlySubstanceUnits="true" id="M_ditp_c" metaid="dfef8771-f0e8-476f-84ae-980d23f32ed1" name="dITP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N4O13P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N5O4" hasOnlySubstanceUnits="true" id="M_thbpt4acam_c" metaid="f1c18f41-2bc6-4b31-b2ec-468cb38d0dca" name="Tetrahydrobiopterin_4a_carbinolamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H15N5O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C65H124O17P2" hasOnlySubstanceUnits="true" id="M_clpn140_p" metaid="d976ebdc-3b64-4c21-b18c-e8002752fbda" name="cardiolipin__tetratetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C65H124O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C34FeH30N4O4" hasOnlySubstanceUnits="true" id="M_pheme_e" metaid="_3b4e271f-4b4f-46be-b161-64021c86a3fd" name="M_pheme_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34FeH30N4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O8P" hasOnlySubstanceUnits="true" id="M_ohpb_c" metaid="_43cfdd25-bc13-446b-b54b-1c3ecd101f70" name="2_Oxo_3_hydroxy_4_phosphobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H24N3O15P" hasOnlySubstanceUnits="true" id="M_ckdo_c" metaid="_7358cc12-80df-4e0c-938a-3256918f1736" name="CMP_3_deoxy_D_manno_octulosonate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H24N3O15P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3" hasOnlySubstanceUnits="true" id="M_thr_L_p" metaid="ef6fc25f-dc22-448e-ac56-09bb7cd71dd7" name="L_Threonine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HSR" hasOnlySubstanceUnits="true" id="M_iscs_c" metaid="_22cb5b73-fbba-4c16-a2ed-1e9242363b30" name="IscS_sulfur_acceptor_protein" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HSR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13N2O5S" hasOnlySubstanceUnits="true" id="M_glucys_c" metaid="f236c86d-42fa-4142-b0e7-d89e523011c4" name="gamma_L_Glutamyl_L_cysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H13N2O5S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2OR" hasOnlySubstanceUnits="true" id="M_trptrna_c" metaid="_0529dcc8-2336-4478-a8e2-4e0f631fa51b" name="L_Tryptophanyl_tRNA_Trp_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12N2OR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15O" hasOnlySubstanceUnits="true" id="M_octapb_c" metaid="f7686454-00d0-42f2-b814-35f5295d8038" name="octanoate__protein_bound_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H15O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34FeH30N4O4" hasOnlySubstanceUnits="true" id="M_pheme_c" metaid="_1abc66e7-59fa-40cd-88c1-4242cf1fa425" name="Protoheme" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34FeH30N4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H3N" hasOnlySubstanceUnits="true" id="M_nh3_c" metaid="b86d4940-5cb3-4099-971b-2bcc661b41b7" name="M_nh3_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H3N</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_fru_e" metaid="_4cb9c971-bd9c-48a4-a844-7414f11e8932" name="D_Fructose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45N2O8PRS" hasOnlySubstanceUnits="true" id="M_tmrs2eACP_c" metaid="c4c1e4fd-5a97-403f-916f-593ac932e591" name="trans_Tetradec_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H45N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H14NO6P" hasOnlySubstanceUnits="true" id="M_g3pe_p" metaid="_57754263-bd27-4ea0-b4c9-9a119d3c8eed" name="sn_Glycero_3_phosphoethanolamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H14NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5" hasOnlySubstanceUnits="true" id="M_ade_e" metaid="_52f357c9-6dc1-429d-ad0d-51c134be17ad" name="Adenine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H5N5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H35N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hoctACP_c" metaid="_4f206e71-6854-4ada-8bf4-c315e03c6c74" name="R__3_Hydroxyoctanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H35N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5" hasOnlySubstanceUnits="true" id="M_ade_c" metaid="_400eef5a-a6b2-4fda-bfb1-350215ef981e" name="Adenine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H5N5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_tag6p_D_c" metaid="_2fdadae5-7512-4e34-a916-92f11dfbc22d" name="M_tag6p_D_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H24N3" hasOnlySubstanceUnits="true" id="M_na15dap_c" metaid="_64ba78a0-186c-45a2-b118-8ec27de6bd9e" name="M_na15dap_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H24N3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7N" hasOnlySubstanceUnits="true" id="M_pheacnit_c" metaid="cfd55262-5b07-4537-8d4f-7589f090f6c0" name="Phenylacetonitrile" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H7N</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6O8P" hasOnlySubstanceUnits="true" id="M_4per_c" metaid="_1f658f0f-13bc-4762-bb3d-5ab2ea667f37" name="4_Phospho_D_erythronate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H6O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H56N7O17P3S" hasOnlySubstanceUnits="true" id="M_tdecoa_c" metaid="_0e92c27a-f47c-4a45-adce-07b0220da4af" name="Tetradecenoyl_CoA__n_C14_1CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H56N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O9P2" hasOnlySubstanceUnits="true" id="M_2mecdp_c" metaid="_65745c5a-9ad9-4206-88c7-5d4a1d556609" name="2_C_methyl_D_erythritol_2_4_cyclodiphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O9P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H14NO6P" hasOnlySubstanceUnits="true" id="M_g3pe_c" metaid="_904be4a7-e1c6-4224-901a-ee9c05f9bd13" name="sn_Glycero_3_phosphoethanolamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H14NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H14NO6P" hasOnlySubstanceUnits="true" id="M_g3pe_e" metaid="_5163c9e9-c52c-43a2-aa1d-5212aa0df27f" name="sn_Glycero_3_phosphoethanolamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H14NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9O3" hasOnlySubstanceUnits="true" id="M_tmoxdpq_c" metaid="_5dc181bf-7b30-4e56-a32b-2125c3f403ac" name="tetramethoxydiphenylquinone" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H9O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N6O12S2Se" hasOnlySubstanceUnits="true" id="M_dgslnt_c" metaid="a265ea4f-bf5e-4aca-8bca-8b5d5c1a15d4" name="M_dgslnt_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H30N6O12S2Se</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H38N4O17" hasOnlySubstanceUnits="true" id="M_hmbil_c" metaid="_12277419-30ac-46b8-a5c0-7da316ff20ec" name="Hydroxymethylbilane" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C40H38N4O17</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13N2O9P" hasOnlySubstanceUnits="true" id="M_fgam_c" metaid="_6f4ac80f-34f4-49cf-97d7-f2a191e7f6bd" name="N2_Formyl_N1__5_phospho_D_ribosyl_glycinamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H13N2O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_L_c" metaid="_4ce2e4aa-b2df-43a7-8dca-aed5ebdf3607" name="L_Cysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_L_e" metaid="_46466521-2bd4-405a-a792-7e71ccb6e2a2" name="L_Cysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="X" hasOnlySubstanceUnits="true" id="M_dsbgox_p" metaid="_3ccba35c-1507-4ef0-beb4-8e449643c06b" name="M_dsbgox_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: X</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NOR" hasOnlySubstanceUnits="true" id="M_leutrna_c" metaid="_5a4d57a8-8d7d-4c7c-b513-ba3118976bde" name="L_Leucyl_tRNA_Leu_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NOR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H13NO9P" hasOnlySubstanceUnits="true" id="M_2cpr5p_c" metaid="b943f4bf-1162-4b51-971c-2b5ca8356d8b" name="1__2_Carboxyphenylamino__1_deoxy_D_ribulose_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H13NO9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43N2O8PRS" hasOnlySubstanceUnits="true" id="M_t3c7mrseACP_c" metaid="f3aeb5ef-5d98-4c04-83cf-f75440550e36" name="trans_3_cis_7_myristoleoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H43N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34FeH30N4O4" hasOnlySubstanceUnits="true" id="M_pheme_p" metaid="_026945df-54db-48df-be4f-6d32c2a30bc4" name="M_pheme_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34FeH30N4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C57H108O17P2" hasOnlySubstanceUnits="true" id="M_clpn120_p" metaid="eadfade5-58ca-408e-a1e6-177a0f674584" name="cardiolipin__tetradodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C57H108O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H24N6O3S" hasOnlySubstanceUnits="true" id="M_ametam_c" metaid="_90a70698-c4fd-42d3-a190-fce1e543592b" name="S_Adenosylmethioninamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H24N6O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17N4O6" hasOnlySubstanceUnits="true" id="M_argsuc_c" metaid="_548dad0d-e810-4e0c-916f-533710098c69" name="N_omega___L_Arginino_succinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H17N4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H57N7O20" hasOnlySubstanceUnits="true" id="M_anhgm4p_p" metaid="ef437769-d96e-486c-a0ac-7675c9c1f6b6" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tetrapeptide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H57N7O20</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8NO6P" hasOnlySubstanceUnits="true" id="M_pydx5p_c" metaid="a265d20f-239c-4f2b-96e4-47806c52cb44" name="Pyridoxal_5__phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H8NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H63N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdddecg_c" metaid="_5e0de559-0d9f-4aef-bea2-0424d18015d3" name="CDP_1_2_didodecanoylglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C36H63N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H39N5O14" hasOnlySubstanceUnits="true" id="M_anhm3p_c" metaid="_09dfe524-bbda-4378-a739-2054adc3159d" name="1_6_anhydrous_N_Acetylmuramyl_tripeptide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C26H39N5O14</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N3O7P2" hasOnlySubstanceUnits="true" id="M_2mahmp_c" metaid="_8f0c1114-c946-4418-90a9-839ab1169ae7" name="2_Methyl_4_amino_5_hydroxymethylpyrimidine_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H8N3O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H57N7O20" hasOnlySubstanceUnits="true" id="M_anhgm4p_c" metaid="ea3dd031-aa5c-47ed-910a-0abf1490feef" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tetrapeptide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H57N7O20</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_xu5p_L_c" metaid="_23436539-9e41-4a4d-a6d2-81cd76e0feb0" name="M_xu5p_L_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8O3S" hasOnlySubstanceUnits="true" id="M_4met2obut_c" metaid="_368e95c1-6823-484a-9e7b-8cf21f3f3edb" name="M_4met2obut_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43N2O8PRS" hasOnlySubstanceUnits="true" id="M_ddcaACP_c" metaid="a40a1259-338c-48b2-806e-4b8876626406" name="Dodecanoyl_ACP__n_C12_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H43N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H34N7O17P3S" hasOnlySubstanceUnits="true" id="M_accoa_c" metaid="dc821adc-7533-46fc-b79a-b053bc224359" name="Acetyl_CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H34N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H28N9O13P3S" hasOnlySubstanceUnits="true" id="M_athtp_c" metaid="_14063840-dfe8-4359-ad41-296aff807402" name="M_athtp_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C22H28N9O13P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_man_e" metaid="ea9e4baf-ac95-4edd-9e5f-f6af023440fd" name="M_man_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnatrp_c" metaid="_4133f28a-dc52-4412-a730-8785003f0495" name="tRNA_Trp_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Cd" hasOnlySubstanceUnits="true" id="M_cd2_p" metaid="_68615065-261f-4adb-90dd-4169baae9fee" name="Cadmium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cd</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43O25P" hasOnlySubstanceUnits="true" id="M_EPS_XF_p" metaid="_1425e0c1-5151-429b-82d0-690b4ac59ccc" name="M_EPS_XF_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C26H43O25P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_man_p" metaid="f7ff6e43-be3c-438a-8e9b-65925ce6ea46" name="M_man_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8N5O8P2" hasOnlySubstanceUnits="true" id="M_6hmhptpp_c" metaid="_409c710f-29d6-4d07-b8f4-d87df02cb571" name="6_hydroxymethyl_dihydropterin_pyrophosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H8N5O8P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N4O3" hasOnlySubstanceUnits="true" id="M_alltn_c" metaid="_47bab33a-0766-4505-87e4-28d8a330b249" name="Allantoin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H6N4O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Cd" hasOnlySubstanceUnits="true" id="M_cd2_e" metaid="_44d6e309-8a37-487d-99c4-d0bdb19e9ec2" name="Cadmium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cd</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O6" hasOnlySubstanceUnits="true" id="M_uri_c" metaid="f8983947-5a36-4518-b9bf-e2aef0578fdd" name="Uridine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N2O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2NO5P" hasOnlySubstanceUnits="true" id="M_cbp_c" metaid="b1c48880-7eb1-4123-981b-4ee1cea764b5" name="Carbamoyl_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH2NO5P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Cd" hasOnlySubstanceUnits="true" id="M_cd2_c" metaid="_4eed35d5-b595-421f-adaf-11b88f15f818" name="Cadmium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cd</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2HO3" hasOnlySubstanceUnits="true" id="M_glx_c" metaid="_674c32f1-edd7-40d6-a8bd-5f6faae95194" name="Glyoxylate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2HO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_L_p" metaid="b7003694-442e-48bd-a6fd-13dbdfd3041b" name="L_Cysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8O8P" hasOnlySubstanceUnits="true" id="M_skm5p_c" metaid="_61c0b10c-e2ef-43ea-9718-a86f1544ca6e" name="M_skm5p_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H8O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C96H172N2O41P2" hasOnlySubstanceUnits="true" id="M_kdo2lipidA_XF_p" metaid="_1099b2b6-5b56-4daa-b70e-9a2872702c32" name="M_kdo2lipidA_XF_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C96H172N2O41P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_g1p_c" metaid="f0b1a5ef-33c9-4a08-92b5-7871d31dfeec" name="D_Glucose_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N2O15P2" hasOnlySubstanceUnits="true" id="M_dtdp4d6dm_c" metaid="_2a63a7ff-a67f-4f69-b544-8a572a3bc467" name="dTDP_4_dehydro_6_deoxy_L_mannose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H22N2O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C96H172N2O41P2" hasOnlySubstanceUnits="true" id="M_kdo2lipidA_XF_c" metaid="_502ee221-f070-45a1-b54b-0c150d3ff782" name="M_kdo2lipidA_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C96H172N2O41P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21O14P" hasOnlySubstanceUnits="true" id="M_suc6p_c" metaid="_7253893e-3747-45d3-a25b-3efa6dbb7ecb" name="Sucrose_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H21O14P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H74O4" hasOnlySubstanceUnits="true" id="M_2omhmbl_c" metaid="f209ff94-a4fd-4bf0-a0b0-794f2dc7026f" name="2_Octaprenyl_3_methyl_5_hydroxy_6_methoxy_1_4_benzoquinol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C48H74O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C96H172N2O41P2" hasOnlySubstanceUnits="true" id="M_kdo2lipidA_XF_e" metaid="_69303646-b652-47d7-b28c-a06b743379f5" name="M_kdo2lipidA_XF_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C96H172N2O41P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C77H139N2O38P3" hasOnlySubstanceUnits="true" id="M_hphhlipidA_XF_c" metaid="_3e5799d3-05f9-4a49-96cc-7de3d1cc505c" name="M_hphhlipidA_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C77H139N2O38P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O5" hasOnlySubstanceUnits="true" id="M_duri_c" metaid="_34107222-3dde-46bf-9616-4a1acfd462f1" name="Deoxyuridine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc2p_p" metaid="_57e43951-ed1a-4e31-820d-96d129a5db07" name="Glycerol_2_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H41N2O8PRS" hasOnlySubstanceUnits="true" id="M_tddec2eACP_c" metaid="_59c66f20-37e6-4161-8b60-c809a99967cb" name="trans_Dodec_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H41N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnagln_c" metaid="dfb26a16-0150-4829-98dd-75d71683c2c5" name="tRNA_Gln_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H27FeN3O15" hasOnlySubstanceUnits="true" id="M_feenter_e" metaid="_06f569a1-82b1-43b5-b046-026c0df888af" name="M_feenter_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H27FeN3O15</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O4S2R4" hasOnlySubstanceUnits="true" id="M_trdox_c" metaid="cf02ed71-77c9-4b39-80b2-51932a2f7eca" name="Oxidized_thioredoxin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N4O4S2R4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O8P" hasOnlySubstanceUnits="true" id="M_g3pg_p" metaid="e47dbb18-e115-41f7-9384-3cc6a6e3458c" name="Glycerophosphoglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H14O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H29O2" hasOnlySubstanceUnits="true" id="M_hdcea_p" metaid="_90416f38-abc8-4831-829d-60e30cc03e11" name="Hexadecenoate__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H29O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43O25P" hasOnlySubstanceUnits="true" id="M_EPS_XF_e" metaid="_2dac150b-c2bc-4097-92ab-2c0d40f43e0b" name="M_EPS_XF_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C26H43O25P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc2p_e" metaid="e1acabc2-2018-4e6b-97d6-976018236dfe" name="Glycerol_2_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H27FeN3O15" hasOnlySubstanceUnits="true" id="M_feenter_p" metaid="_9c8ce71a-2f18-4327-ad3f-83dd1397a99c" name="M_feenter_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H27FeN3O15</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H7O3" hasOnlySubstanceUnits="true" id="M_phpyr_c" metaid="a97a873d-235e-43f9-8f4f-ccc996e10f53" name="Phenylpyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H7O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hdecACP_c" metaid="_7df5fb06-d0db-476d-ab24-9362bd3fbfaf" name="S__3_Hydroxydecanoyl__acyl_carrier_protein" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H39N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43O25P" hasOnlySubstanceUnits="true" id="M_EPS_XF_c" metaid="_4ec00c07-8dd8-42fd-8e51-fae404b3a71b" name="M_EPS_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C26H43O25P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc2p_c" metaid="_88c71068-60b9-4b38-88fe-4ea34f0dac5a" name="Glycerol_2_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23O2" hasOnlySubstanceUnits="true" id="M_ddca_p" metaid="_4d96532d-03b0-4b58-887f-70241760ab8b" name="Dodecanoate__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H23O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2S" hasOnlySubstanceUnits="true" id="M_hcys_L_c" metaid="_4cf57846-c9a4-42d7-9458-b50552789a85" name="L_Homocysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14N2O5" hasOnlySubstanceUnits="true" id="M_thymd_c" metaid="_0ae5c203-0786-41f7-9cc0-7b9349cf63a2" name="Thymidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H14N2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Cl" hasOnlySubstanceUnits="true" id="M_cl_p" metaid="a85023b1-6044-4628-88e4-6505990be08b" name="Chloride" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cl</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HSR" hasOnlySubstanceUnits="true" id="M_sufse_c" metaid="c65b45a3-b9bd-4356-be1d-95a6ad9649b2" name="M_sufse_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HSR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O7P" hasOnlySubstanceUnits="true" id="M_3pg_c" metaid="_7c850fdc-7ee4-4131-8713-1c4e7db33ef9" name="3_Phospho_D_glycerate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H4O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="RH2" hasOnlySubstanceUnits="true" id="M_etfrd_c" metaid="bc7d1494-f2e3-4392-a6b4-20e2abdfe54f" name="Electron_transfer_flavoprotein_reduced" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: RH2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49N2O9PRS" hasOnlySubstanceUnits="true" id="M_3opalmACP_c" metaid="d03ccd95-0ad8-40a6-99ec-cff5d909c168" name="3_Oxohexadecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H49N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38N7O18P3S" hasOnlySubstanceUnits="true" id="M_r3hbcoa_c" metaid="_7091ffad-7925-4b77-97de-67b2358b790e" name="R__3_Hydroxybutanoyl_CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H38N7O18P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H21N5O14P2" hasOnlySubstanceUnits="true" id="M_adprib_c" metaid="_8447d936-9b96-4794-adad-6e64e8be25e9" name="ADPribose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H21N5O14P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H25N3O17P2" hasOnlySubstanceUnits="true" id="M_uacmam_c" metaid="_87ee04d6-6c04-42fb-99a4-635593f51ae1" name="UDP_N_acetyl_D_mannosamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H25N3O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N2O16P2" hasOnlySubstanceUnits="true" id="M_udpxyl_c" metaid="_121290d7-eee1-43b4-9cc3-5cac99592dba" name="UDP_D_xylose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H20N2O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H105N2O20P" hasOnlySubstanceUnits="true" id="M_lipidAds_XF_c" metaid="fdd44c49-62fd-40fe-a8f0-de3f2a5cf27f" name="M_lipidAds_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C56H105N2O20P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6" hasOnlySubstanceUnits="true" id="M_acgam_c" metaid="_929cca87-4c08-439f-8e38-8d760db037eb" name="N_Acetyl_D_glucosamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H15NO6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H44N6O15" hasOnlySubstanceUnits="true" id="M_anhm4p_c" metaid="_55dc95a9-9c90-4e47-ac05-b51200af8681" name="1_6_anhydrous_N_Acetylmuramyl_tetrapeptide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H44N6O15</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8NO2" hasOnlySubstanceUnits="true" id="M_ind3ac_c" metaid="c05f427b-cebf-48fc-881b-2db18a86688c" name="Indole_3_acetate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H8NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Cl" hasOnlySubstanceUnits="true" id="M_cl_e" metaid="_8de57525-7850-4331-955a-593d97aa5cd9" name="Chloride" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cl</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8NO7P" hasOnlySubstanceUnits="true" id="M_phthr_c" metaid="_688ae74e-7e6c-444f-8ac7-ef9a56c07efc" name="O_Phospho_4_hydroxy_L_threonine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H8NO7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H41N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hcddec5eACP_c" metaid="e8ad6c5c-ffcf-4c14-bf13-617ce96feeaa" name="R__3_hydroxy_cis_dodec_5_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H41N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H7NO4" hasOnlySubstanceUnits="true" id="M_thdp_c" metaid="_1b78ecb9-a1be-43a5-9061-6b31d460fca8" name="2_3_4_5_Tetrahydrodipicolinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H7NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C73H140O17P2" hasOnlySubstanceUnits="true" id="M_clpn160_p" metaid="be613459-f8dd-4b09-893a-2559577ca2fe" name="cardiolipin__tetrahexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C73H140O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6" hasOnlySubstanceUnits="true" id="M_acgam_p" metaid="ebd83331-b18c-41b4-a44b-059dcf479c03" name="M_acgam_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H15NO6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H29N2O8PRS" hasOnlySubstanceUnits="true" id="M_thex2eACP_c" metaid="e378c6d1-fb50-4d2c-be3f-7d9d0026a9d0" name="trans_Hex_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H29N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H41N4O16" hasOnlySubstanceUnits="true" id="M_dscl_c" metaid="ea6c4aa1-cc4d-4ada-87f2-809ebb395fa8" name="dihydrosirohydrochlorin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H41N4O16</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H127N2O32P3" hasOnlySubstanceUnits="true" id="M_phhlipidA_XF_c" metaid="c96f56b7-b608-43d3-a6a1-356c9ba4b3e0" name="M_phhlipidA_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C70H127N2O32P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N5O13P2S" hasOnlySubstanceUnits="true" id="M_paps_c" metaid="f209ccf7-0a4e-4739-a0cd-7b1df95736a6" name="3__Phosphoadenylyl_sulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N5O13P2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5O2" hasOnlySubstanceUnits="true" id="M_bz_c" metaid="ae1c7a8d-8097-40e1-8dac-f56ed8b8c459" name="Benzoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O13P3" hasOnlySubstanceUnits="true" id="M_dgtp_c" metaid="_02b8aea4-dd62-45c1-8ee6-2ed83d65c1a7" name="dGTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O13P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H60O5" hasOnlySubstanceUnits="true" id="M_12dgr140_p" metaid="aba63d0f-24a8-409d-850d-51ff5ed4bb19" name="M_12dgr140_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H60O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10NO6P" hasOnlySubstanceUnits="true" id="M_pdx5p_c" metaid="_8c22f1f8-8834-4467-9706-e5cf85181be4" name="Pyridoxine_5__phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H10NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N5O8P1X" hasOnlySubstanceUnits="true" id="M_moadamp_c" metaid="_1673f815-08ff-48a9-a6c1-7fce124ac8f8" name="MoaD_Protein_with_bound_AMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12N5O8P1X</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5O2" hasOnlySubstanceUnits="true" id="M_bz_p" metaid="_4c50d908-be09-41cc-bd87-d9e77149cd86" name="M_bz_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O7P" hasOnlySubstanceUnits="true" id="M_dimp_c" metaid="_4847f1ea-fbe8-46a0-b954-d777099b14f5" name="dIMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N4O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_r1p_c" metaid="c51fe663-a96c-4d5f-b044-fd55cadbf789" name="alpha_D_Ribose_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H42N3O18P2" hasOnlySubstanceUnits="true" id="M_u3hga_XF_c" metaid="_8688a4a6-3274-4c07-b155-4025fa339e4e" name="M_u3hga_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H42N3O18P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O10P2" hasOnlySubstanceUnits="true" id="M_adp_c" metaid="_2c5d4c58-1d75-4ae1-885b-ca295055afa8" name="ADP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O10P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5O2" hasOnlySubstanceUnits="true" id="M_bz_e" metaid="_50d58e18-184f-4feb-a6bb-b7f585abcda2" name="M_bz_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C71H113N2O18P2" hasOnlySubstanceUnits="true" id="M_unagamu_c" metaid="_9d0cf216-7876-451e-a63a-64554bdc32c4" name="M_unagamu_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C71H113N2O18P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10NO2S" hasOnlySubstanceUnits="true" id="M_met_D_e" metaid="_0c467055-569b-4120-a154-eb8045b1652b" name="M_met_D_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10NO2S" hasOnlySubstanceUnits="true" id="M_met_D_c" metaid="_4742ba11-749b-45ba-831f-6756fc3f2680" name="M_met_D_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21N2O7PS" hasOnlySubstanceUnits="true" id="M_pan4p_c" metaid="b39ca11a-6517-469c-838a-d90ebfc77437" name="Pantetheine_4__phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H21N2O7PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O9P" hasOnlySubstanceUnits="true" id="M_ump_c" metaid="_52592ef6-e980-4115-a0ce-3be62c414f22" name="UMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N2O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O" hasOnlySubstanceUnits="true" id="M_hxan_p" metaid="_43301271-49c5-439a-b48c-343af7c883ec" name="Hypoxanthine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H4N4O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14NO9P" hasOnlySubstanceUnits="true" id="M_acgam1p_c" metaid="ee099462-057f-40f2-9318-435b77e02ac5" name="N_Acetyl_D_glucosamine_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H14NO9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C84H149N2O39P2" hasOnlySubstanceUnits="true" id="M_kdo2lipid4HL_XF_c" metaid="_5f10e95f-0f73-4cb4-86f8-a423a42e26b4" name="M_kdo2lipid4HL_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C84H149N2O39P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnasecys_c" metaid="_43e9e8dc-27a9-45c7-a846-a9806ffc5900" name="tRNA_SeCys_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N2O15P2" hasOnlySubstanceUnits="true" id="M_dtdp4d6dg_c" metaid="c3c4a7d9-e30f-4081-a77a-b0f5247d5e59" name="dTDP_4_dehydro_6_deoxy_D_glucose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H22N2O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H39N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ocddec5eACP_c" metaid="c3249e6e-3844-464e-912b-eaffa32b9b2e" name="3_oxo_cis_dodec_5_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H39N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H56O3" hasOnlySubstanceUnits="true" id="M_2hpmhobq_c" metaid="e92b21fa-04e6-4466-8e88-54b6da43b2ec" name="2_Hexaprenyl_3_methyl_6_methoxy_1_4_benzoquinone" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H56O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3" hasOnlySubstanceUnits="true" id="M_gln_L_c" metaid="f4a97e17-4cd4-4c44-a820-68d123b6536e" name="L_Glutamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3" hasOnlySubstanceUnits="true" id="M_gln_L_e" metaid="cb3178e8-82df-4bfc-9bd3-2225d4f2deae" name="L_Glutamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H33O2" hasOnlySubstanceUnits="true" id="M_ocdcea_e" metaid="c49ceefe-cbb1-4c1f-b2c9-7d2be26c1725" name="octadecenoate__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H33O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H70O10P1" hasOnlySubstanceUnits="true" id="M_pg161_c" metaid="_30287bb9-8205-4e45-936c-6b7ff079fb61" name="Phosphatidylglycerol__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H70O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H33O2" hasOnlySubstanceUnits="true" id="M_ocdcea_c" metaid="_80627c1f-2ab2-4b5e-b9ee-f3bace1053ad" name="M_ocdcea_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H33O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HS2R" hasOnlySubstanceUnits="true" id="M_sufsesh_c" metaid="_8a50d7ae-12e1-458b-bca1-41d50528128f" name="M_sufsesh_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HS2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H41O7P1" hasOnlySubstanceUnits="true" id="M_1odecg3p_c" metaid="bc7afb5b-a544-4ac5-b596-28d4f53b5a73" name="1_octadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H41O7P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O10PS" hasOnlySubstanceUnits="true" id="M_aps_c" metaid="e8f644aa-cf4e-4851-9b52-524f55800b88" name="Adenosine_5__phosphosulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O10PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Cl" hasOnlySubstanceUnits="true" id="M_cl_c" metaid="_460e0853-51f1-4911-9939-66ee68043783" name="Chloride" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cl</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Cu" hasOnlySubstanceUnits="true" id="M_cu2_e" metaid="fa22814a-ff48-4484-925b-60b9d589e426" name="Copper_2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cu</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10NO2S" hasOnlySubstanceUnits="true" id="M_met_D_p" metaid="_29bc905d-471c-422d-ac52-fb6b64907c9f" name="M_met_D_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Cu" hasOnlySubstanceUnits="true" id="M_cu2_c" metaid="_7f917db6-f623-4384-ae7d-b478ab60e6e9" name="Copper_2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cu</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O" hasOnlySubstanceUnits="true" id="M_hxan_c" metaid="d2e6ca98-7ed8-4c5b-9b61-fdd33de2e076" name="Hypoxanthine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H4N4O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H54N7O17P3S" hasOnlySubstanceUnits="true" id="M_ddcacoa_c" metaid="_108bae10-3aa7-4e54-955e-3f76398c8f5c" name="Dodecanoyl_CoA__n_C12_0CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C33H54N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H70O10P1" hasOnlySubstanceUnits="true" id="M_pg161_p" metaid="_40f2b6ec-e609-48b0-a490-7f91812458f9" name="Phosphatidylglycerol__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H70O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3" hasOnlySubstanceUnits="true" id="M_gln_L_p" metaid="_11575be7-e27d-4ba4-b151-c5045e19fccd" name="L_Glutamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Cu" hasOnlySubstanceUnits="true" id="M_cu2_p" metaid="_4a0f9fdb-ba9d-4617-b1f5-84637d786267" name="Copper_2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cu</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H33O2" hasOnlySubstanceUnits="true" id="M_ocdcea_p" metaid="accd4a8b-5987-440e-a077-9adbb463d0ea" name="octadecenoate__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H33O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O" hasOnlySubstanceUnits="true" id="M_hxan_e" metaid="aad41c36-39a2-4627-9de3-54ebb9a099c0" name="Hypoxanthine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H4N4O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H55N2O8PRS" hasOnlySubstanceUnits="true" id="M_ocdcaACP_c" metaid="a99cb6e9-3d7b-4418-8e12-3e3eadb5e4ac" name="Octadecanoyl_ACP__n_C18_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H55N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H67N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdtdec7eg_c" metaid="cfed38fb-a6aa-4c04-925b-a8ddecbef47f" name="CDP_1_2_ditetradec_7_enoylglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C40H67N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O7P" hasOnlySubstanceUnits="true" id="M_2pg_c" metaid="e70b8811-d6b0-4409-805b-b6cb4cbcc792" name="D_Glycerate_2_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H4O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H22N2O17P2" hasOnlySubstanceUnits="true" id="M_udpgal_c" metaid="ca9477b5-955c-4986-8dda-a59e550e5e7a" name="UDPgalactose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H22N2O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H29N2O10PRS" hasOnlySubstanceUnits="true" id="M_gmeACP_c" metaid="ddead12e-825c-49d7-aabf-988f35133766" name="Glutaryl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H29N2O10PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_inost_p" metaid="bdbe4468-697b-4df1-8745-7da05a39e022" name="myo_Inositol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H81N1O10P1" hasOnlySubstanceUnits="true" id="M_ps180_c" metaid="_8df23e87-1dbe-4a1a-aad2-a2499978d7bb" name="phosphatidylserine__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H81N1O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O2" hasOnlySubstanceUnits="true" id="M_thym_c" metaid="_78dcf97b-b64a-4383-8155-483beeb01f07" name="Thymine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H6N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12NO6P" hasOnlySubstanceUnits="true" id="M_3ig3p_c" metaid="_4794eeab-2b3a-4e86-947e-a3668dd50e19" name="C___3_Indolyl__glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H64N7O17P3S" hasOnlySubstanceUnits="true" id="M_odecoa_c" metaid="_09cf7336-e84b-4f05-badd-7be76bcbabe8" name="Octadecenoyl_CoA__n_C18_1CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H64N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N3O6S" hasOnlySubstanceUnits="true" id="M_gthrd_c" metaid="_6d318b97-a47e-49aa-87cc-3ad6fb676344" name="Reduced_glutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H16N3O6S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H4O2S10Fe4R" hasOnlySubstanceUnits="true" id="M_sufbcd_4fe4s_c" metaid="ef85ce8a-599c-49c2-b934-52d0e2f16d6c" name="M_sufbcd_4fe4s_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H4O2S10Fe4R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C68H104N12O38" hasOnlySubstanceUnits="true" id="M_murein3p3p_p" metaid="_9933264b-e15a-4ed1-a4f0-f4fc7c227565" name="two_linked_disacharide_tripeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C68H104N12O38</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H31O7P1" hasOnlySubstanceUnits="true" id="M_1tdec7eg3p_c" metaid="ab977643-263a-4a03-a254-bb852121a6e2" name="1_tetradec_7_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H31O7P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2" hasOnlySubstanceUnits="true" id="M_4abut_e" metaid="_83f27303-75f4-4d6e-8ac2-28eeb19db871" name="4_Aminobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3" hasOnlySubstanceUnits="true" id="M_5aop_c" metaid="a32ed875-f60f-4312-961c-01fc0b55d16b" name="5_Amino_4_oxopentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O2" hasOnlySubstanceUnits="true" id="M_thym_p" metaid="b8c96569-55bb-4c39-bfb6-94c7bdf53eda" name="M_thym_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H6N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O1" hasOnlySubstanceUnits="true" id="M_meoh_e" metaid="a3aecd07-6bf3-464b-8ac1-bdd59da7f49e" name="Methanol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH4O1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O1" hasOnlySubstanceUnits="true" id="M_meoh_c" metaid="_9890bb12-45ac-4f4d-a19a-fc811557ae3c" name="Methanol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH4O1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O3" hasOnlySubstanceUnits="true" id="M_dad_2_c" metaid="_90683926-b866-41fe-80c1-98babccbacf6" name="Deoxyadenosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H78O10P1" hasOnlySubstanceUnits="true" id="M_pg181_c" metaid="_8f92af48-2761-440e-9022-9d3fa1cbc681" name="Phosphatidylglycerol__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H78O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2" hasOnlySubstanceUnits="true" id="M_4abut_c" metaid="b71769b5-a14b-48f8-91d0-88bb3d343059" name="4_Aminobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O2" hasOnlySubstanceUnits="true" id="M_thym_e" metaid="_7f85071a-6a4f-43db-9823-8a031f2c7d41" name="M_thym_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H6N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H33N2O11PRS" hasOnlySubstanceUnits="true" id="M_hpmeACP_c" metaid="_94c28444-1421-443a-aba2-0691b5acec37" name="3_Hydroxypimeloyl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H33N2O11PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H112N14O39" hasOnlySubstanceUnits="true" id="M_murein4px4p_p" metaid="eeb327c2-4345-4f36-91b1-60518942ab25" name="two_disacharide_linked_murein_units__tetrapeptide_corsslinked_tetrapeptide__A2pm__D_ala___middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C74H112N14O39</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2" hasOnlySubstanceUnits="true" id="M_4abut_p" metaid="_7bbf70a8-f779-47ec-a17e-4c489edf91d3" name="4_Aminobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O1" hasOnlySubstanceUnits="true" id="M_meoh_p" metaid="d5cde6e6-4478-4de3-a0a9-0fef3954603c" name="Methanol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH4O1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H78O10P1" hasOnlySubstanceUnits="true" id="M_pg181_p" metaid="_12290258-af5c-47c1-979d-c45053f67323" name="Phosphatidylglycerol__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H78O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H37N2O8PRS" hasOnlySubstanceUnits="true" id="M_tdec2eACP_c" metaid="b40796b5-d9da-41e2-8108-7ab4fac80089" name="trans_Dec_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H37N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H72O2" hasOnlySubstanceUnits="true" id="M_2omph_c" metaid="_50c8fd8a-0b8d-4b9d-9f3f-7e73939896c7" name="2_Octaprenyl_6_methoxyphenol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C47H72O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H33N7O13P2S" hasOnlySubstanceUnits="true" id="M_dpcoa_c" metaid="_2114affe-c062-4904-a403-daf62352e50a" name="Dephospho_CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H33N7O13P2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="K" hasOnlySubstanceUnits="true" id="M_k_p" metaid="_215c8043-9dff-438d-a258-cec5f2bc47ac" name="potassium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: K</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5NO4" hasOnlySubstanceUnits="true" id="M_23dhdp_c" metaid="_752884b5-3ccf-4ce5-b928-ef740b225ab0" name="2_3_Dihydrodipicolinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11" hasOnlySubstanceUnits="true" id="M_lcts_p" metaid="f961f514-f854-4ab7-a243-2b378a11a89f" name="M_lcts_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H22O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H15N5O3S" hasOnlySubstanceUnits="true" id="M_5mta_c" metaid="cbac2a4e-49f7-48a8-9add-029ce811ba89" name="5_Methylthioadenosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H15N5O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H77O13P2" hasOnlySubstanceUnits="true" id="M_pgp181_c" metaid="_5f9ad7b0-8d3c-43cf-8a33-90e1eb710e57" name="Phosphatidylglycerophosphate__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H77O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H16N4O7P2S" hasOnlySubstanceUnits="true" id="M_thmpp_c" metaid="_30903d62-892f-48e3-a1c0-6b6a72280043" name="Thiamine_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H16N4O7P2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O7P" hasOnlySubstanceUnits="true" id="M_amp_c" metaid="_4fe6c29c-fecf-470c-be2a-a9bcf8656833" name="AMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H60O5" hasOnlySubstanceUnits="true" id="M_12dgr140_c" metaid="_7e1e6be4-b6d5-4044-b0b9-2f04b2bea97a" name="1_2_Diacyl_sn_glycerol__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H60O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2R" hasOnlySubstanceUnits="true" id="M_sertrna_c" metaid="_81f93249-c898-454e-98bd-866ce601f5ba" name="L_Seryl_tRNA_Ser_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H33N9O15P2" hasOnlySubstanceUnits="true" id="M_fadh2_c" metaid="_4041656b-e412-49f4-b816-7600ed0651ee" name="Flavin_adenine_dinucleotide_reduced" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H33N9O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11" hasOnlySubstanceUnits="true" id="M_lcts_c" metaid="_37a5c5d2-2f41-4400-b1e7-bcba04bb38d5" name="M_lcts_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H22O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N5O13P3" hasOnlySubstanceUnits="true" id="M_ahdt_c" metaid="_5035af71-197d-41f9-aa74-443f3358baaf" name="2_Amino_4_hydroxy_6__erythro_1_2_3_trihydroxypropyl_dihydropteridine_triphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N5O13P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O14P3" hasOnlySubstanceUnits="true" id="M_dutp_c" metaid="_80fe83ce-be12-4f96-a6f6-a17511a22de4" name="dUTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N2O14P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H37N2O9PRS" hasOnlySubstanceUnits="true" id="M_3odecACP_c" metaid="a34c0d26-e907-4875-baf3-7229d06e1f16" name="3_Oxodecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H37N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO8P" hasOnlySubstanceUnits="true" id="M_gam6p_c" metaid="f0da3ccb-33da-4fb1-ac90-d48b92df0746" name="D_Glucosamine_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H77O13P2" hasOnlySubstanceUnits="true" id="M_pgp181_p" metaid="af1769b8-8aed-4c2c-a532-e2aab8ffd559" name="Phosphatidylglycerophosphate__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H77O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H21N5O15P2" hasOnlySubstanceUnits="true" id="M_prfp_c" metaid="fa867997-62a0-40f2-99a3-cf71a1fa8319" name="1__5_Phosphoribosyl__5___5_phosphoribosylamino_methylideneamino_imidazole_4_carboxamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H21N5O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O4" hasOnlySubstanceUnits="true" id="M_succ_c" metaid="_474e6990-28d1-4ec8-9f01-356e9e7060cd" name="Succinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO8P" hasOnlySubstanceUnits="true" id="M_g3ps_p" metaid="_4f51406a-ef1b-4d16-9d37-94c2adea606c" name="Glycerophosphoserine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O4" hasOnlySubstanceUnits="true" id="M_succ_p" metaid="_37f6347d-7051-42e9-a560-40c4bf52c173" name="Succinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_gal_p" metaid="fa6238b5-6319-4f16-8851-65f593e11a36" name="D_Galactose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N3O6S" hasOnlySubstanceUnits="true" id="M_gthrd_e" metaid="f6eae696-19ab-4dd8-af09-37528a564931" name="Reduced_glutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H16N3O6S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N3O6S" hasOnlySubstanceUnits="true" id="M_gthrd_p" metaid="a9635167-b7c7-4115-a2fa-95aa4914a33b" name="Reduced_glutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H16N3O6S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C63H116N2O29P2" hasOnlySubstanceUnits="true" id="M_hlipidA_XF_c" metaid="cde26a11-d4db-4032-a434-28c5ec93113f" name="M_hlipidA_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C63H116N2O29P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H50N7O17P3S" hasOnlySubstanceUnits="true" id="M_dcacoa_c" metaid="_793f8d72-7a4d-47d7-98e2-bcbb112cd0b2" name="Decanoyl_CoA__n_C10_0CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H50N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_gal_c" metaid="_9ba9d16d-988a-4711-970f-57a94cce6ea5" name="D_Galactose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_gal_e" metaid="_52e47f01-5ef5-4afe-bfda-be27bfeca562" name="D_Galactose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="K" hasOnlySubstanceUnits="true" id="M_k_c" metaid="_232f0d8c-8b0a-4749-a7ca-5d12734bd206" name="potassium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: K</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5O3" hasOnlySubstanceUnits="true" id="M_2obut_c" metaid="ee189109-cd3b-4543-81a6-b72eefb96c9d" name="2_Oxobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO8P" hasOnlySubstanceUnits="true" id="M_g3ps_c" metaid="_40067cd7-167d-4fba-a233-0883aa18794d" name="Glycerophosphoserine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5N3O" hasOnlySubstanceUnits="true" id="M_csn_c" metaid="_0a157836-f6dd-476a-b4fb-6fe5231d5451" name="Cytosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H5N3O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="K" hasOnlySubstanceUnits="true" id="M_k_e" metaid="_806bd4c5-c3bb-413a-bf66-963a22bfb2f4" name="potassium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: K</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO8P" hasOnlySubstanceUnits="true" id="M_g3ps_e" metaid="_9df4095e-2177-43b9-b941-0114c6f850c6" name="Glycerophosphoserine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O7P2" hasOnlySubstanceUnits="true" id="M_ipdp_c" metaid="_57069a2f-f263-4d87-b32a-03f2a90a3ce3" name="Isopentenyl_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H23N2O8PRS" hasOnlySubstanceUnits="true" id="M_acACP_c" metaid="_7a08b1a3-ec7b-4b70-acd9-8907b1ab9e9f" name="Acetyl_ACP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C13H23N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C111H167N21O58" hasOnlySubstanceUnits="true" id="M_murein4px4px4p_p" metaid="_7034283c-795d-4c7c-8dd9-c73ebfa3af89" name="three_disacharide_linked_murein_units__tetrapeptide_crosslinked_tetrapeptide__A2pm__D_ala____tetrapeptide_corsslinked_tetrapeptide__A2pm__D_ala____middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C111H167N21O58</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H54FeN4O6" hasOnlySubstanceUnits="true" id="M_hemeA_1_c" metaid="_8dafc607-8c60-4144-bb61-e69d7933af41" name="M_hemeA_1_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C49H54FeN4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3" hasOnlySubstanceUnits="true" id="M_glyald_c" metaid="_99315983-b783-4d15-a64c-bb7c50508372" name="D_Glyceraldehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H6O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O5" hasOnlySubstanceUnits="true" id="M_mal_D_e" metaid="_3f836984-888d-442d-a80d-124ea9653d5e" name="M_mal_D_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3" hasOnlySubstanceUnits="true" id="M_glyald_e" metaid="_52131b8a-027f-4a1b-b1dc-4307a0d9d7c4" name="M_glyald_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H6O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="HCO3" hasOnlySubstanceUnits="true" id="M_hco3_p" metaid="_73857529-3fa7-459d-b32c-74dc47eeba72" name="M_hco3_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HCO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O5" hasOnlySubstanceUnits="true" id="M_mal_D_p" metaid="b66491f9-b558-456f-84fe-f45205b1a417" name="M_mal_D_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N3O6SSe" hasOnlySubstanceUnits="true" id="M_gslnt_c" metaid="f5b6bdf7-9148-4ce7-bd50-24127c890289" name="M_gslnt_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H16N3O6SSe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5N5O" hasOnlySubstanceUnits="true" id="M_preq0_c" metaid="b309cee8-6e97-4114-96bd-93c5d0ba25cb" name="7_cyano_7_carbaguanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5N5O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O5" hasOnlySubstanceUnits="true" id="M_mal_D_c" metaid="_458861eb-3197-4592-90fe-ca6bd9aa0f88" name="M_mal_D_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O9P" hasOnlySubstanceUnits="true" id="M_6pgl_c" metaid="ee88dbde-4073-4637-b00b-0767b52d584b" name="6_phospho_D_glucono_1_5_lactone" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H3O6" hasOnlySubstanceUnits="true" id="M_acon_C_c" metaid="_983551f4-31f2-4080-ae0b-846e98ef4a74" name="cis_Aconitate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H3O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_R_L_c" metaid="ed0f82b6-0a1a-4986-a913-e2835731af7d" name="L_methionine_R_sulfoxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O2R" hasOnlySubstanceUnits="true" id="M_asntrna_c" metaid="ee82cb7d-b294-4e8f-bcbd-9d89b010173f" name="L_Asparaginyl_tRNA_Asn_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H8N2O2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_R_L_e" metaid="d6df6cfa-f5fd-4e6a-bb9f-54c0f495e3fd" name="M_metsox_R_L_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H18N4O6" hasOnlySubstanceUnits="true" id="M_dmlz_c" metaid="cb34b92e-e342-4791-b821-d9e212d8605d" name="6_7_Dimethyl_8__1_D_ribityl_lumazine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C13H18N4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Zn" hasOnlySubstanceUnits="true" id="M_zn2_e" metaid="_4a556ba2-0ee3-43e7-a4f8-7546de1ffafa" name="Zinc" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Zn</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H7O4" hasOnlySubstanceUnits="true" id="M_34hpp_c" metaid="c9300efc-7e75-456f-b6a3-aea4c65b139d" name="3__4_Hydroxyphenyl_pyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H7O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="RCu11" hasOnlySubstanceUnits="true" id="M_11cu2s_CopA_p" metaid="_997bc6c2-f19f-44e1-b525-322eb1f375bb" name="Protein_CopA_bounded_to_11_atoms_of_copper" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: RCu11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Zn" hasOnlySubstanceUnits="true" id="M_zn2_c" metaid="_1fb155a7-e27d-4f0f-8fb7-10e208dcab56" name="Zinc" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Zn</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H12NO6" hasOnlySubstanceUnits="true" id="M_suchms_c" metaid="_3f394db0-1c6a-4775-9589-e5b9a86fe816" name="M_suchms_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H12NO6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Zn" hasOnlySubstanceUnits="true" id="M_zn2_p" metaid="_3f542a6b-e6f5-429b-a313-c9d62a9fe0c9" name="Zinc" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Zn</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H7N2O5P" hasOnlySubstanceUnits="true" id="M_imacp_c" metaid="aabf93be-f89c-4836-a9ec-ea62f62bbbc9" name="3__Imidazol_4_yl__2_oxopropyl_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H7N2O5P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" hasOnlySubstanceUnits="true" id="M_na1_e" metaid="_83d73a25-8317-4dca-910b-370f23535b9c" name="Sodium" sboTerm="SBO:0000240"/> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7N4O4" hasOnlySubstanceUnits="true" id="M_alltt_c" metaid="eee9822b-fa76-413e-9f94-233797c284c6" name="Allantoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H7N4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" hasOnlySubstanceUnits="true" id="M_na1_c" metaid="_4c0b1829-431b-453e-a0be-2f3caf81bfe3" name="Sodium" sboTerm="SBO:0000240"/> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13O8" hasOnlySubstanceUnits="true" id="M_kdo_c" metaid="_83255d96-44c0-4eac-9047-d321d1883508" name="3_Deoxy_D_manno_2_octulosonate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H13O8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO4" hasOnlySubstanceUnits="true" id="M_4hthr_c" metaid="_2f970658-3405-49d2-827e-cda31ac3c580" name="M_4hthr_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H37O7P" hasOnlySubstanceUnits="true" id="M_1hdecg3p_c" metaid="e94be5d7-f496-4f2a-8593-3bcfc9c2d1ce" name="1_hexadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H37O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" hasOnlySubstanceUnits="true" id="M_na1_p" metaid="_67530b6e-a8f1-458c-b939-90f3fc424138" name="Sodium" sboTerm="SBO:0000240"/> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H41N2O8PRS" hasOnlySubstanceUnits="true" id="M_cddec5eACP_c" metaid="_7d9bf15a-c064-4218-a701-d71b4206b45f" name="cis_dodec_5_enoyl__acyl_carrier_protein___n_C12_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H41N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15NO8P" hasOnlySubstanceUnits="true" id="M_4ppan_c" metaid="_32fb951f-9d39-48a0-bf99-b42cd73fcf37" name="D_4__Phosphopantothenate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H15NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H18N2O16P2" hasOnlySubstanceUnits="true" id="M_udp4kp_c" metaid="_267c7469-631b-4806-b114-f73873b2ca8f" name="UDP_4_keto_pentose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H18N2O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12NO8" hasOnlySubstanceUnits="true" id="M_sl2a6o_c" metaid="c53714e9-99bf-443b-a309-9745c89bcdac" name="N_Succinyl_2_L_amino_6_oxoheptanedioate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12NO8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O7P" hasOnlySubstanceUnits="true" id="M_dgmp_c" metaid="_88eff2be-703f-4c42-9026-2053283954d6" name="dGMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_R_L_p" metaid="_1a7ecca6-839c-43db-a508-6bb4abbdeec9" name="M_metsox_R_L_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H76O5" hasOnlySubstanceUnits="true" id="M_12dgr180_c" metaid="_912e1495-951c-4316-88ef-1f633ce29a60" name="1_2_Diacyl_sn_glycerol__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H76O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H16N4O6" hasOnlySubstanceUnits="true" id="M_4r5au_c" metaid="f669c91e-8061-44ca-aa0c-0aa962f5d915" name="4__1_D_Ribitylamino__5_aminouracil" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H16N4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NOR" hasOnlySubstanceUnits="true" id="M_iletrna_c" metaid="_6b19678e-6701-474f-9abc-29755a992a42" name="L_Isoleucyl_tRNA_Ile_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NOR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H35N7O19P3S" hasOnlySubstanceUnits="true" id="M_succoa_c" metaid="_09209ea9-8108-4d26-8459-40fe64cf3fb6" name="Succinyl_CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H35N7O19P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H76O5" hasOnlySubstanceUnits="true" id="M_12dgr180_p" metaid="_00a128f5-2674-4f2d-8a4c-aeb6c8a5bc36" name="M_12dgr180_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H76O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_inost_e" metaid="_75ad0a0a-5032-4e7e-bb14-0333fceb16a6" name="myo_Inositol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N10O22P5" hasOnlySubstanceUnits="true" id="M_ap5a_c" metaid="_84f0382a-a19e-4f6c-9e95-ad5376ac7502" name="P1_P5_Bis_5__adenosyl__pentaphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H24N10O22P5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_inost_c" metaid="de6efc63-7434-4c4c-ae58-746a80de0478" name="myo_Inositol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hddecACP_c" metaid="_80a29bd8-d2b9-471b-bb2b-956596ab1831" name="R__3_Hydroxydodecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H43N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N7O6" hasOnlySubstanceUnits="true" id="M_5mthf_c" metaid="d2df0672-3e3e-4352-aada-dde3e5ab2c86" name="5_Methyltetrahydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H24N7O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3" hasOnlySubstanceUnits="true" id="M_glyald_p" metaid="_61ea2ba8-0f32-4126-96e8-4b79cae44de2" name="M_glyald_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H6O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HCO3" hasOnlySubstanceUnits="true" id="M_hco3_c" metaid="f323515f-6b4d-4f7b-9856-3eefd33b670e" name="Bicarbonate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HCO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O8P" hasOnlySubstanceUnits="true" id="M_gar_c" metaid="fd54baee-ee54-4189-b660-6d95f5456c1b" name="N1__5_Phospho_D_ribosyl_glycinamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H14N2O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="HCO3" hasOnlySubstanceUnits="true" id="M_hco3_e" metaid="_61d939b1-ed1f-43ce-9e03-a4c08e8bc887" name="M_hco3_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HCO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H27N2O9PRS" hasOnlySubstanceUnits="true" id="M_3haACP_c" metaid="_033de923-3d72-446f-8bf6-1ceeaf457028" name="3R__3_Hydroxyacyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H27N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3" hasOnlySubstanceUnits="true" id="M_dha_c" metaid="a0bfad08-cbfb-4f6d-806f-0f4ff1765afa" name="M_dha_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H6O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12O6" hasOnlySubstanceUnits="true" id="M_quin_e" metaid="bd99a476-4b2e-4522-a3e4-6f25d1489e01" name="M_quin_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4" hasOnlySubstanceUnits="true" id="M_adn_p" metaid="_7d39ad76-0d65-4592-89a3-0c21f052f029" name="Adenosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N5O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4N2O" hasOnlySubstanceUnits="true" id="M_urea_c" metaid="_77223863-1562-4b4d-8f6e-dd771c950861" name="Urea" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH4N2O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H21N2O2" hasOnlySubstanceUnits="true" id="M_dann_c" metaid="_2352f11e-ba6f-4ddd-a073-d343b40a6112" name="7_8_Diaminononanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H21N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3" hasOnlySubstanceUnits="true" id="M_ser_D_c" metaid="aeb53456-a522-4845-a201-588cd0c2e42a" name="D_Serine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H75N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdhdec9eg_c" metaid="_43d30dbe-5f11-4ef3-953f-e8f9ea4f67b2" name="CDP_1_2_dihexadec_9_enoylglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C44H75N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12O6" hasOnlySubstanceUnits="true" id="M_quin_p" metaid="_8fc5fa9f-9288-4b97-99a7-dff2a6505342" name="M_quin_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H16N2O7" hasOnlySubstanceUnits="true" id="M_sl26da_c" metaid="_41ef3c64-c064-4cd4-92ed-418079560801" name="N_Succinyl_LL_2_6_diaminoheptanedioate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H16N2O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O3S" hasOnlySubstanceUnits="true" id="M_dhmtp_c" metaid="ac881e6e-fec6-4756-b044-e561c508a25e" name="M_dhmtp_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H10O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H68O5" hasOnlySubstanceUnits="true" id="M_12dgr160_c" metaid="_0afbc90f-9b1c-452c-8ad7-a4429280ce87" name="1_2_Diacyl_sn_glycerol__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H68O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_S_L_c" metaid="_16643f8f-c679-4729-9aa3-9f1f5f62564f" name="L_Methionine_Sulfoxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O4" hasOnlySubstanceUnits="true" id="M_23dhmp_c" metaid="c4a26a7f-7396-4c9b-b382-953bea50f73f" name="R__2_3_Dihydroxy_3_methylpentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_S_L_e" metaid="_49986ea5-6b53-4473-b693-50ce26c6e9e8" name="M_metsox_S_L_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4N2O" hasOnlySubstanceUnits="true" id="M_urea_p" metaid="_43c3bda0-062b-47b6-a12b-f30f608bbe0d" name="Urea" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH4N2O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H55O8P1" hasOnlySubstanceUnits="true" id="M_pa141_c" metaid="c188f9da-a9ab-4218-9ddf-0a1bf83e6f7c" name="1_2_ditetradec_7_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H55O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO3R" hasOnlySubstanceUnits="true" id="M_asptrna_c" metaid="_1bc00e1f-f2fd-4a62-9bba-e097ba867cb0" name="L_Aspartyl_tRNA_Asp_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H6NO3R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H7O3" hasOnlySubstanceUnits="true" id="M_3mob_c" metaid="_026bee60-b896-4ae9-ac99-18069021688d" name="3_Methyl_2_oxobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H7O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N5O7P" hasOnlySubstanceUnits="true" id="M_dhpmp_c" metaid="f228857b-3f2f-4b3f-83ca-0044dd00329f" name="M_dhpmp_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N5O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H25N5O16P2" hasOnlySubstanceUnits="true" id="M_adphep_LD_c" metaid="_043aff48-157c-40a7-820d-8b79c5d4c269" name="ADP_L_glycero_D_manno_heptose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H25N5O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H27O2" hasOnlySubstanceUnits="true" id="M_ttdca_c" metaid="_8193484f-1f9f-4cde-8c77-a264ef32b72c" name="tetradecanoate__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H27O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_xylu_L_c" metaid="_9ea7f04a-68b4-4f04-b027-8a9a1d987e35" name="M_xylu_L_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H27O2" hasOnlySubstanceUnits="true" id="M_ttdca_e" metaid="_85bf543c-dbf3-40b8-aec0-f8867d1a9759" name="tetradecanoate__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H27O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H55O8P1" hasOnlySubstanceUnits="true" id="M_pa141_p" metaid="f110f5d8-f27b-4fb9-86de-ac4db73ccf6d" name="1_2_ditetradec_7_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H55O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H62N7O17P3S" hasOnlySubstanceUnits="true" id="M_pmtcoa_c" metaid="a2492e1d-7658-447e-bc3f-6f124b6498ca" name="Palmitoyl_CoA__n_C16_0CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H62N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39N2O8PRS" hasOnlySubstanceUnits="true" id="M_dcaACP_c" metaid="_39d6026b-bd6c-43e1-819e-3e37a4d38279" name="Decanoyl_ACP__n_C10_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H39N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4" hasOnlySubstanceUnits="true" id="M_adn_e" metaid="_06681255-ca55-4d6e-a318-5146048fe430" name="Adenosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N5O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hcmrs7eACP_c" metaid="_991b9738-33dd-4908-9225-f410485a340b" name="R__3_hydroxy_cis_myristol_7_eoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H45N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O4" hasOnlySubstanceUnits="true" id="M_2dhp_c" metaid="_35e85121-8948-4271-b5da-3a8ee3131c50" name="2_Dehydropantoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4" hasOnlySubstanceUnits="true" id="M_adn_c" metaid="_7ee4933b-44b9-4ef3-b32f-6eb2879a4af8" name="Adenosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N5O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12O6" hasOnlySubstanceUnits="true" id="M_quin_c" metaid="_0f6f353d-ba4b-494d-90c0-1ed3ad6ee4e1" name="M_quin_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H6O" hasOnlySubstanceUnits="true" id="M_etoh_c" metaid="e47016c7-19a2-4935-ab82-c5eb220b89d0" name="Ethanol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H6O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2" hasOnlySubstanceUnits="true" id="M_val_L_p" metaid="d9887695-6657-4c5f-bb99-08f7125c9e82" name="L_Valine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H70O" hasOnlySubstanceUnits="true" id="M_2oph_c" metaid="d49cb102-3bd8-47e0-bf24-9cfa84e5179e" name="2_Octaprenylphenol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C46H70O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2" hasOnlySubstanceUnits="true" id="M_val_L_c" metaid="e438fed2-aa4e-4393-abde-490c77c49a61" name="L_Valine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O" hasOnlySubstanceUnits="true" id="M_4ahmmp_c" metaid="ce138066-f4d6-4c15-9b02-8caddd0dff9e" name="4_Amino_5_hydroxymethyl_2_methylpyrimidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9N3O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2" hasOnlySubstanceUnits="true" id="M_val_L_e" metaid="_46ca55d5-b6be-4c78-9219-c02c32c4dc16" name="L_Valine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5" hasOnlySubstanceUnits="true" id="M_fuc_L_e" metaid="e73d084e-64bf-40b1-b7b4-945299e2f7c9" name="M_fuc_L_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H26N7O14P2" hasOnlySubstanceUnits="true" id="M_nad_c" metaid="bb1b199e-2969-485a-a88c-1ec5f0179d20" name="Nicotinamide_adenine_dinucleotide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H26N7O14P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5" hasOnlySubstanceUnits="true" id="M_fuc_L_c" metaid="_355a215d-4db8-4832-8fb8-ca1ab01f0eda" name="M_fuc_L_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="AsO3" hasOnlySubstanceUnits="true" id="M_aso3_c" metaid="_5453d5d0-a66b-49bb-b42a-eabca45bc40c" name="Arsenite" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: AsO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O9P" hasOnlySubstanceUnits="true" id="M_2ddg6p_c" metaid="_114fd6c5-31ba-4155-b85e-21f7a01dd1c9" name="M_2ddg6p_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H8O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C77H119N15O41" hasOnlySubstanceUnits="true" id="M_murein5p4p_p" metaid="_9dc1160f-ee56-4e10-a93c-c065af2fb172" name="two_linked_disacharide_pentapeptide_and_tetrapeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C77H119N15O41</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H27O2" hasOnlySubstanceUnits="true" id="M_ttdca_p" metaid="f632defc-455c-460e-8b73-ffab54254999" name="tetradecanoate__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H27O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O7" hasOnlySubstanceUnits="true" id="M_5dglcn_c" metaid="d17cd973-347c-4f92-808f-f3db2829a900" name="5_Dehydro_D_gluconate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C81H156O17P2" hasOnlySubstanceUnits="true" id="M_clpn180_p" metaid="_070e315e-74cc-433c-867e-b5840ddb5f12" name="cardiolipin__tetraoctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C81H156O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10O5" hasOnlySubstanceUnits="true" id="M_3c2hmp_c" metaid="_177a430c-8868-472c-893e-1beb2488d67f" name="3_Carboxy_2_hydroxy_4_methylpentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H22N3O15P2" hasOnlySubstanceUnits="true" id="M_udpLa4n_c" metaid="ce336872-4e86-448f-8eff-547a30ec3470" name="M_udpLa4n_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H22N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_S_L_p" metaid="fa47220e-2432-42c1-9b38-149e2ebb40e0" name="M_metsox_S_L_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H68O5" hasOnlySubstanceUnits="true" id="M_12dgr160_p" metaid="e162bccf-b25d-40c0-b12e-e97ff2edd2ff" name="M_12dgr160_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H68O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H53NO12P" hasOnlySubstanceUnits="true" id="M_lipidX_XF_c" metaid="b1c41bb2-0646-4bcc-9e04-a1133485d7d4" name="M_lipidX_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C28H53NO12P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H36N2O11" hasOnlySubstanceUnits="true" id="M_novbcn_e" metaid="_47801743-fdfb-408d-a8a7-9787d1283699" name="novobiocin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H36N2O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N3O9P" hasOnlySubstanceUnits="true" id="M_5caiz_c" metaid="_6c9e98ef-7d1e-44ce-b4a9-42c3263c2ab8" name="5_phosphoribosyl_5_carboxyaminoimidazole" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N3O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H6O" hasOnlySubstanceUnits="true" id="M_etoh_p" metaid="_83b31a68-c565-4434-910e-c0c6359fff49" name="M_etoh_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H6O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49N2O8PRS" hasOnlySubstanceUnits="true" id="M_tpalm2eACP_c" metaid="_22e5a1e3-e9c3-4ff0-90da-9ab71904dc41" name="trans_Hexadec_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H49N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N2O4" hasOnlySubstanceUnits="true" id="M_forglu_c" metaid="e0b032b0-6ff3-46ef-b5ab-71288f24bc8d" name="N_Formimidoyl_L_glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H8N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12N2O3" hasOnlySubstanceUnits="true" id="M_progly_c" metaid="_691ebdf0-21c6-4598-a1ad-36baaae52159" name="M_progly_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H12N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H22N3O18P2" hasOnlySubstanceUnits="true" id="M_uacmamu_c" metaid="a6428724-467c-4601-8651-14050b290d18" name="UDP_N_acetyl_D_mannosaminouronate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H22N3O18P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO7P" hasOnlySubstanceUnits="true" id="M_pram_c" metaid="_85c62393-413d-4893-8c01-3c328c75978f" name="5_Phospho_beta_D_ribosylamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H43N3O19P2" hasOnlySubstanceUnits="true" id="M_u3aga_XF_c" metaid="bdcddf87-891e-48b4-ada6-61140f93ac48" name="M_u3aga_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H43N3O19P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H36N2O11" hasOnlySubstanceUnits="true" id="M_novbcn_p" metaid="_352b1076-1234-4942-9297-1cd9f37bc16d" name="novobiocin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H36N2O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14N4O4S2R4" hasOnlySubstanceUnits="true" id="M_trdrd_c" metaid="c0f2e38a-aeaf-4c60-9faa-7d994d090104" name="Reduced_thioredoxin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H14N4O4S2R4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3OR" hasOnlySubstanceUnits="true" id="M_histrna_c" metaid="_46576463-2ab2-47d6-bc19-ece0396b696e" name="L_Histidyl_tRNA_His_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9N3OR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H24N2O15P2" hasOnlySubstanceUnits="true" id="M_dtdprmn_c" metaid="_7248c5f2-5536-4fa6-8885-a1f09fd313f4" name="dTDP_L_rhamnose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H24N2O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2" hasOnlySubstanceUnits="true" id="M_pro_L_e" metaid="e5935128-9d10-4545-bc60-df7762d32050" name="L_Proline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2" hasOnlySubstanceUnits="true" id="M_pro_L_c" metaid="_60cffd2a-0723-46c3-b847-76149ed8ba06" name="L_Proline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O6" hasOnlySubstanceUnits="true" id="M_2ddglcn_c" metaid="_0c68e62b-a2ad-4ab3-a62d-59eea5cf7389" name="2_Dehydro_3_deoxy_D_gluconate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H71N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdtdecg_c" metaid="d172f13d-c895-4c2c-b6e8-bbe229008d13" name="CDP_1_2_ditetradecanoylglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C40H71N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N5O17P4" hasOnlySubstanceUnits="true" id="M_ppgpp_c" metaid="fbbed2b2-bc7f-463e-8a61-dedfb2f17969" name="Guanosine_3__5__bis_diphosphate_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N5O17P4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O5" hasOnlySubstanceUnits="true" id="M_cytd_c" metaid="d7071268-659c-44cc-9d26-6f94bc593872" name="Cytidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H13N3O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_ara5p_c" metaid="e94b938e-eac2-49a5-b775-b6b2ada4953a" name="D_Arabinose_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O10P2" hasOnlySubstanceUnits="true" id="M_dgdp_c" metaid="f40b6e12-896e-42da-ad86-290ed78876b0" name="dGDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O10P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="R" hasOnlySubstanceUnits="true" id="M_etfox_c" metaid="_1d6c03df-9b36-4f17-99aa-1b3c105d8f19" name="Electron_transfer_flavoprotein_oxidized" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H35N2O8PRS" hasOnlySubstanceUnits="true" id="M_ocACP_c" metaid="a12506fc-a8d8-4489-83e9-6eca6690bad8" name="Octanoyl_ACP__n_C8_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H35N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2" hasOnlySubstanceUnits="true" id="M_pro_L_p" metaid="_3aa4181e-df32-468a-996f-8ee889f22e76" name="L_Proline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H14N5O11P" hasOnlySubstanceUnits="true" id="M_dcamp_c" metaid="_3e36d473-0360-46f6-bea3-6e69921f5b5d" name="N6__1_2_Dicarboxyethyl__AMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H14N5O11P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O6" hasOnlySubstanceUnits="true" id="M_chor_c" metaid="_861501cd-bfaf-4379-af20-55f06b55f048" name="chorismate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H8O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H17NO11P" hasOnlySubstanceUnits="true" id="M_acmum6p_c" metaid="a7f2ca1c-7335-40a7-a4c9-40213dffd6c9" name="N_acetylmuramate_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H17NO11P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5O3" hasOnlySubstanceUnits="true" id="M_sucsal_c" metaid="_5bb109ef-224e-4128-9d2a-82069c112e24" name="Succinic_semialdehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N2O3" hasOnlySubstanceUnits="true" id="M_alaala_p" metaid="_2b110650-1ab5-4691-97e0-2452fdb6ee7f" name="D_Alanyl_D_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O4" hasOnlySubstanceUnits="true" id="M_dhmpt_c" metaid="_9d286888-17b3-45e3-8d35-29df68cb72e1" name="M_dhmpt_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H13N5O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="P2HO7" hasOnlySubstanceUnits="true" id="M_ppi_c" metaid="_86a426b1-c2d9-4c3c-93bc-3c02dc0df33f" name="Diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: P2HO7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O3" hasOnlySubstanceUnits="true" id="M_asn_L_c" metaid="b6b0aa02-7dd9-4612-be46-f310627219fa" name="L_Asparagine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H8N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10O10P" hasOnlySubstanceUnits="true" id="M_2dda7p_c" metaid="_3886d780-2882-46ea-a946-49d3ccb7923c" name="2_Dehydro_3_deoxy_D_arabino_heptonate_7_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H10O10P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H16N4" hasOnlySubstanceUnits="true" id="M_agm_p" metaid="_441bd501-469e-41d8-b5ad-a13ace02d988" name="M_agm_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H16N4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Co" hasOnlySubstanceUnits="true" id="M_cobalt2_c" metaid="_21744346-1c03-4851-8278-ffdcbdc40d47" name="Cobalt_Co2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Co</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H33O7P" hasOnlySubstanceUnits="true" id="M_1tdecg3p_c" metaid="_3b77a3b0-f42e-4935-b884-401ffdffec0a" name="1_tetradecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H33O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Co" hasOnlySubstanceUnits="true" id="M_cobalt2_e" metaid="f70b5bb1-2240-48c1-a529-dd502abf1328" name="Cobalt_Co2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Co</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N2O3" hasOnlySubstanceUnits="true" id="M_alaala_c" metaid="_9f439b98-142d-4805-8d78-4ff57bfc2251" name="D_Alanyl_D_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Co" hasOnlySubstanceUnits="true" id="M_cobalt2_p" metaid="_374b1ce7-42eb-4fc3-a848-cd0b91f8727f" name="Cobalt_Co2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Co</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hpalmACP_c" metaid="_591f9614-19ff-4312-b06f-e9a075408c77" name="R_3_hydroxypalmitoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H51N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H40N4O8" hasOnlySubstanceUnits="true" id="M_cpppg3_c" metaid="a0e3b7c5-adee-4995-8dcd-0f8e09571690" name="Coproporphyrinogen_III" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C36H40N4O8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N4O9P" hasOnlySubstanceUnits="true" id="M_5apru_c" metaid="_88bc271c-57ea-4ef6-b7fa-972715ec43f4" name="5_Amino_6__5__phosphoribosylamino_uracil" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H13N4O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H27N2O8PRS" hasOnlySubstanceUnits="true" id="M_butACP_c" metaid="_17ce6730-5fbe-4b03-91a1-82b6ca8b65d1" name="Butyryl_ACP__n_C4_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H27N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7O2" hasOnlySubstanceUnits="true" id="M_pac_c" metaid="d0773256-1447-4dbc-aaf0-41ad8a833922" name="Phenylacetic_acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H7O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O6" hasOnlySubstanceUnits="true" id="M_pphn_c" metaid="eac503bd-6aef-46b3-9533-9b26f1f8c190" name="Prephenate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H8O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaile_c" metaid="e4d6442b-ae1e-436b-8f82-0baeedc19d5d" name="tRNA_Ile_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H87N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdodecg_c" metaid="_81e152a5-a783-4702-8f88-e73bf5766026" name="CDP_1_2_dioctadecanoylglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C48H87N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5NO3" hasOnlySubstanceUnits="true" id="M_2amsa_c" metaid="_207bcba1-43b4-459f-a665-42b837a9ff00" name="2_Aminomalonate_semialdehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2" hasOnlySubstanceUnits="true" id="M_h2o2_p" metaid="_42b77eb6-d10c-45a7-ac8c-1518b2ee7787" name="Hydrogen_peroxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S" hasOnlySubstanceUnits="true" id="M_met_L_e" metaid="_26554b8f-fc5f-42e3-a5a2-22d5acae17b6" name="L_Methionine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S" hasOnlySubstanceUnits="true" id="M_met_L_c" metaid="a5c2ad58-768a-4217-812c-eb0b377dc6d2" name="L_Methionine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H17NO3" hasOnlySubstanceUnits="true" id="M_8aonn_c" metaid="_5e5dd73e-e9b3-4ad5-97e3-36dbba07eac7" name="8_Amino_7_oxononanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H17NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H60N7O17P3S" hasOnlySubstanceUnits="true" id="M_hdcoa_c" metaid="ab7c9567-6b41-46ec-8ca0-9208c5931875" name="Hexadecenoyl_CoA__n_C16_1CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H60N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2" hasOnlySubstanceUnits="true" id="M_h2o2_e" metaid="_5cddf336-5581-454d-a420-15eb05f6f669" name="Hydrogen_peroxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9N5O2" hasOnlySubstanceUnits="true" id="M_6hmhpt_c" metaid="_099a49ea-bc36-4aa8-8ea5-7a5fc7abdd76" name="6_hydroxymethyl_dihydropterin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H9N5O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2" hasOnlySubstanceUnits="true" id="M_h2o2_c" metaid="d3edff3f-0965-4524-988e-e012dd269a53" name="Hydrogen_peroxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H16N4" hasOnlySubstanceUnits="true" id="M_agm_c" metaid="e5d12b90-0e92-4296-99a1-4fa488158079" name="Agmatine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H16N4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H19N7O6" hasOnlySubstanceUnits="true" id="M_dhf_c" metaid="_0cdde813-73c0-4312-a5ac-3270f214d9dd" name="7_8_Dihydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H19N7O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H61N1O10P1" hasOnlySubstanceUnits="true" id="M_ps141_c" metaid="d979247f-71a8-407d-bc8e-9683a02c94fb" name="phosphatidylserine__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H61N1O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N2O4" hasOnlySubstanceUnits="true" id="M_ppbng_c" metaid="_59903941-7a27-49b5-a881-95339159efd4" name="Porphobilinogen" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Cu" hasOnlySubstanceUnits="true" id="M_cu_p" metaid="e8bcc9b6-666f-4fc5-85b6-a38ecd155920" name="Copper_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cu</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28N3O19P2" hasOnlySubstanceUnits="true" id="M_uamr_c" metaid="_7aedc4d6-d209-4d7a-9c88-bdf456a7a1a8" name="UDP_N_acetylmuramate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H28N3O19P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H21N5O15P2" hasOnlySubstanceUnits="true" id="M_prlp_c" metaid="b905b0c2-fac2-411a-a2bf-d1590df284b5" name="5___5_phospho_1_deoxyribulos_1_ylamino_methylideneamino__1__5_phosphoribosyl_imidazole_4_carboxamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H21N5O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H38N7O19P3S" hasOnlySubstanceUnits="true" id="M_14dhncoa_c" metaid="_68633470-e8bf-451e-8dfd-33ed36f1747c" name="M_14dhncoa_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C32H38N7O19P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_rib_D_p" metaid="_9b4632b8-c810-4aa9-bcef-4dd8c6dac22a" name="M_rib_D_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H1O10P3" hasOnlySubstanceUnits="true" id="M_pppi_c" metaid="_20ac260f-64a1-48ce-95b8-612167d825e9" name="Inorganic_triphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H1O10P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H74O4" hasOnlySubstanceUnits="true" id="M_q8_c" metaid="_713ced97-3ec8-4988-9d3e-4b6f02e22aeb" name="Ubiquinone_8" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C49H74O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_rib_D_c" metaid="b609e0d5-8769-49ee-af1c-6bd774cc1742" name="D_Ribose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_rib_D_e" metaid="_7fe4e843-8b2e-4a79-9c69-113790e3fbd3" name="M_rib_D_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H33N4O20P2" hasOnlySubstanceUnits="true" id="M_uama_c" metaid="e88b32e9-3ab7-4339-9dac-ee5d6103e7bd" name="UDP_N_acetylmuramoyl_L_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H33N4O20P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O5" hasOnlySubstanceUnits="true" id="M_dkdepiins_c" metaid="_57aa188e-b0ff-4aa5-bf0a-0f5ade5ba851" name="D_2_3_diketo_4_deoxy_epi_inositol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H8O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9NO5" hasOnlySubstanceUnits="true" id="M_acglu_c" metaid="_71143921-2770-4402-81e5-ab47f3ce3c7c" name="N_Acetyl_L_glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H9NO5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H112N14O39" hasOnlySubstanceUnits="true" id="M_murein5px3p_p" metaid="_9398569c-4242-4675-8c1e-cf6e06b7b4d5" name="two_disacharide_linked_murein_units__pentapeptide_corsslinked_tripeptide__A2pm__A2pm___middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C74H112N14O39</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35O2" hasOnlySubstanceUnits="true" id="M_ocdca_p" metaid="_4270b066-041a-4f59-8667-d54dd587d40e" name="octadecanoate__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H35O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H16N2" hasOnlySubstanceUnits="true" id="M_15dap_c" metaid="_39242362-797d-43b7-9196-266844627539" name="1_5_Diaminopentane" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H16N2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10NO5" hasOnlySubstanceUnits="true" id="M_4adcho_c" metaid="dfc3c1be-3f1c-46e7-baae-871822414165" name="4_amino_4_deoxychorismate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H10NO5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35O2" hasOnlySubstanceUnits="true" id="M_ocdca_c" metaid="_013a03d1-ca68-44fd-a28c-d3e27ab6b81b" name="octadecanoate__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H35O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O8P" hasOnlySubstanceUnits="true" id="M_dump_c" metaid="_90502e6c-c63e-4585-872c-71a131527779" name="dUMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N2O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35O2" hasOnlySubstanceUnits="true" id="M_ocdca_e" metaid="_01d7b1e3-4e48-4381-aa07-2bfafb8091e3" name="octadecanoate__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H35O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S" hasOnlySubstanceUnits="true" id="M_met_L_p" metaid="_31660c24-6d1e-44f1-901e-9d1e1a6fd1bd" name="L_Methionine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2" hasOnlySubstanceUnits="true" id="M_phe_L_c" metaid="efb6a520-6566-47f5-97e2-6b479ac974a7" name="L_Phenylalanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8N2" hasOnlySubstanceUnits="true" id="M_ind3acnl_c" metaid="_8f6328bd-b54a-481c-ae9a-d62bbec59141" name="Indole_3_acetonitrile" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H8N2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO8P" hasOnlySubstanceUnits="true" id="M_gam1p_c" metaid="d5721ea7-3c6b-4522-af59-b79d2ccc5ea0" name="D_Glucosamine_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H70O2" hasOnlySubstanceUnits="true" id="M_2ohph_c" metaid="_0fdfb462-13a9-4101-9ec0-697b8a86cb64" name="2_Octaprenyl_6_hydroxyphenol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C46H70O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H78N1O8P1" hasOnlySubstanceUnits="true" id="M_pe181_c" metaid="fd43a421-7afe-430a-b14b-75d2b355a298" name="phosphatidylethanolamine__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C41H78N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N2O4" hasOnlySubstanceUnits="true" id="M_dhor_S_c" metaid="_421dc086-7ce2-4b8d-9030-1a5c923a7b2b" name="S__Dihydroorotate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H5N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O9P" hasOnlySubstanceUnits="true" id="M_6pddgluc_c" metaid="_2793caa9-dd17-4761-aa7a-a6efa7a36fac" name="6_phospho_5_dehydro_2_deoxy_D_gluconate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H8O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H21N7O6" hasOnlySubstanceUnits="true" id="M_thf_c" metaid="c7211891-9bf2-4e60-b017-af0d573d8261" name="5_6_7_8_Tetrahydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H21N7O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H78N1O8P1" hasOnlySubstanceUnits="true" id="M_pe181_p" metaid="_2b926724-e5fb-40cb-8651-d6b9e7712f48" name="phosphatidylethanolamine__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C41H78N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11" hasOnlySubstanceUnits="true" id="M_tre_p" metaid="bbc8cd77-7423-4cba-9801-a0333bfb5efe" name="Trehalose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H22O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H29NO11" hasOnlySubstanceUnits="true" id="M_doxrbcn_p" metaid="c38ad4b2-1917-4507-ac64-0f8d0800ea51" name="doxorubicin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H29NO11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H17N2O7P" hasOnlySubstanceUnits="true" id="M_5prdmbz_c" metaid="_31322133-ee94-4555-bdbc-0ce4d1fcaebc" name="N1__5_Phospho_alpha_D_ribosyl__5_6_dimethylbenzimidazole" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H17N2O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H37N2O8PRS" hasOnlySubstanceUnits="true" id="M_cdec3eACP_c" metaid="_55282680-fafe-4f12-a120-486dd25a84e0" name="cis_dec_3_enoyl__acyl_carrier_protein___n_C10_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H37N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H53N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hcvac11eACP_c" metaid="_9137c6a2-dc9d-4d8f-a838-f0326b61f795" name="R__3_hydroxy_cis_vacc_11_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H53N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H48O5" hasOnlySubstanceUnits="true" id="M_fusa_p" metaid="ff503e73-c9f2-4b3c-8775-6bc323cb4be2" name="fusidic_acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H48O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H31O2" hasOnlySubstanceUnits="true" id="M_hdca_e" metaid="_145ff66e-ac94-4a8c-a834-024f1c35ee98" name="Hexadecanoate__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H31O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H23N3O14P2" hasOnlySubstanceUnits="true" id="M_4c2me_c" metaid="_294e9ce7-1a62-4f47-b794-aa14f1cd97c8" name="4__cytidine_5__diphospho__2_C_methyl_D_erythritol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H23N3O14P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H31O2" hasOnlySubstanceUnits="true" id="M_hdca_c" metaid="_10ffd07d-57bf-4f7b-ad24-9f3742897e53" name="Hexadecanoate__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H31O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9O5" hasOnlySubstanceUnits="true" id="M_skm_c" metaid="f1c19d7a-3ba5-48c5-be9b-4107b1b8dced" name="Shikimate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H9O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO4" hasOnlySubstanceUnits="true" id="M_acser_c" metaid="_7a0e7d9e-ac6c-47c6-b80e-7cffd61fe6c4" name="O_Acetyl_L_serine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H58O10P1" hasOnlySubstanceUnits="true" id="M_pg120_c" metaid="_69cc85e7-8d6e-49ce-8b76-0e4e45449467" name="Phosphatidylglycerol__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H58O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H26N3O19P2" hasOnlySubstanceUnits="true" id="M_uaccg_c" metaid="_37ec534f-d7ca-48a3-9fe9-c7f96048cb01" name="UDP_N_acetyl_3_O__1_carboxyvinyl__D_glucosamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H26N3O19P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H67O8P" hasOnlySubstanceUnits="true" id="M_pa160_p" metaid="fe0dbd2d-c340-4ad2-864f-963bfd9fe175" name="1_2_dihexadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H67O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H9O10P" hasOnlySubstanceUnits="true" id="M_3psme_c" metaid="d94b5739-b97f-4b86-8b80-835b55bdd053" name="5_O__1_Carboxyvinyl__3_phosphoshikimate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H9O10P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnacys_c" metaid="_90505ec1-a563-4122-bdd0-896e9288e5ad" name="tRNA_Cys_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H15N4O12P" hasOnlySubstanceUnits="true" id="M_25aics_c" metaid="c67d6700-c935-4ec0-9260-96c100b30df9" name="S__2__5_Amino_1__5_phospho_D_ribosyl_imidazole_4_carboxamido_succinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C13H15N4O12P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H29NO11" hasOnlySubstanceUnits="true" id="M_doxrbcn_e" metaid="_0762590e-2935-478c-8104-b4a1dc326bcf" name="doxorubicin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H29NO11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O4" hasOnlySubstanceUnits="true" id="M_dhnpt_c" metaid="d54cfcb8-dc3a-4021-8796-53a7230eb806" name="Dihydroneopterin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H13N5O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11" hasOnlySubstanceUnits="true" id="M_tre_e" metaid="b4805ee3-69b6-4e31-b5fb-2e3f0a9cb952" name="Trehalose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H22O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H31O2" hasOnlySubstanceUnits="true" id="M_hdca_p" metaid="cc21791b-825b-4982-8e9d-9dbe5e055551" name="Hexadecanoate__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H31O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H3NO4" hasOnlySubstanceUnits="true" id="M_iasp_c" metaid="_93117f5e-0e6d-4a26-991c-2fbf5b7298c8" name="Iminoaspartate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H3NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H25N7O17P3" hasOnlySubstanceUnits="true" id="M_nadp_c" metaid="_7a21d41c-2527-4fa5-a89d-c0f684871ac8" name="Nicotinamide_adenine_dinucleotide_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H25N7O17P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N4O8P" hasOnlySubstanceUnits="true" id="M_aicar_c" metaid="c365e5c7-e20c-491b-8600-054f09cfbd2e" name="5_Amino_1__5_Phospho_D_ribosyl_imidazole_4_carboxamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H13N4O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_ile_L_p" metaid="_25731139-3702-4a6d-966c-ae4d0b79a88d" name="L_Isoleucine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O5" hasOnlySubstanceUnits="true" id="M_ins_c" metaid="fca9d728-c3db-4aac-a171-4b2fd1cc7a08" name="Inosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O3Se" hasOnlySubstanceUnits="true" id="M_slnt_c" metaid="d8724f50-c723-4339-90c4-d760b6ff272a" name="M_slnt_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O3Se</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_ile_L_e" metaid="_10d6d005-33ed-4b6a-9940-3b391a2db297" name="L_Isoleucine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="O3Se" hasOnlySubstanceUnits="true" id="M_slnt_e" metaid="_66b164a6-1705-494f-905b-2b68072c7e6c" name="M_slnt_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O3Se</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H58O10P1" hasOnlySubstanceUnits="true" id="M_pg120_p" metaid="_8d2f2626-1dd2-4252-9ed9-0ebdb215520a" name="Phosphatidylglycerol__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H58O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_ru5p_D_c" metaid="_4e6d32d9-35cb-48cc-8b7c-551c09c7a4eb" name="D_Ribulose_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_ile_L_c" metaid="_29a7e4f6-5584-4bd6-b056-f1832a26f099" name="L_Isoleucine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H67O8P" hasOnlySubstanceUnits="true" id="M_pa160_c" metaid="_36623cd0-5efa-4a3e-a7e4-389e9e59611e" name="1_2_dihexadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H67O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25O7P2" hasOnlySubstanceUnits="true" id="M_frdp_c" metaid="_14d57c51-4548-451c-9235-2ad74a5f1456" name="Farnesyl_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H25O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnahis_c" metaid="e909d795-209b-4437-8c01-081dddf99e02" name="tRNA_His_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H6NO2" hasOnlySubstanceUnits="true" id="M_anth_c" metaid="e755e642-5aa5-4644-a8cd-b64fe895b125" name="Anthranilate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H6NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="XH2" hasOnlySubstanceUnits="true" id="M_dsbard_p" metaid="b5ea8e0e-dfdc-41a2-b871-13f5e34057c4" name="periplasmic_protein_disulfide_isomerase_I__reduced_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: XH2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H57O13P2" hasOnlySubstanceUnits="true" id="M_pgp120_c" metaid="_06e4d779-1980-4ed0-888a-4a87b304bd3c" name="Phosphatidylglycerophosphate__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H57O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnamet_c" metaid="_11ed32e7-7671-4cb2-a6d8-003f716f0c48" name="tRNA_Met_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="O3Se" hasOnlySubstanceUnits="true" id="M_slnt_p" metaid="_9a371751-3fa6-44d4-80cd-fd9398bd2621" name="M_slnt_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O3Se</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H51N7O26P2" hasOnlySubstanceUnits="true" id="M_ugmd_c" metaid="_6ce9d60d-b574-4192-be81-79aba1aa37bb" name="UDP_N_acetylmuramoyl_L_alanyl_D_gamma_glutamyl_meso_2_6_diaminopimelate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H51N7O26P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H57O13P2" hasOnlySubstanceUnits="true" id="M_pgp120_p" metaid="_9380ba53-3d75-46e5-a124-f315e5dc9226" name="Phosphatidylglycerophosphate__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H57O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C15668H28496N8O10693P8" hasOnlySubstanceUnits="true" id="M_OLPS_XF_p" metaid="_6b61be36-75b6-4cc1-b813-63b83b808e30" name="M_OLPS_XF_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15668H28496N8O10693P8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H7O7" hasOnlySubstanceUnits="true" id="M_micit_c" metaid="_89b182bb-9101-4f1a-9c52-62f1a4245ea4" name="methylisocitrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H7O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C15668H28496N8O10693P8" hasOnlySubstanceUnits="true" id="M_OLPS_XF_e" metaid="_6534f674-cebc-4996-91cd-7c83559f5d44" name="M_OLPS_XF_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15668H28496N8O10693P8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P2" hasOnlySubstanceUnits="true" id="M_h2mb4p_c" metaid="e88af32f-52bf-4ea3-96d4-c9ed6f6b9627" name="1_hydroxy_2_methyl_2__E__butenyl_4_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O11P2" hasOnlySubstanceUnits="true" id="M_dudp_c" metaid="_7f99c338-b79b-4a9e-9a3d-55ab23354df3" name="dUDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N2O11P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O15P3" hasOnlySubstanceUnits="true" id="M_utp_c" metaid="_78f0205b-6045-4d99-afb0-1036908abb19" name="UTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N2O15P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15668H28496N8O10693P8" hasOnlySubstanceUnits="true" id="M_OLPS_XF_c" metaid="e5ec0980-9d6c-4725-a6d8-01596295f970" name="M_OLPS_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15668H28496N8O10693P8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H7NO6PS" hasOnlySubstanceUnits="true" id="M_2c4mthzep_c" metaid="_5e130cfb-277f-428a-a098-650ca7817479" name="M_2c4mthzep_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H7NO6PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O9P" hasOnlySubstanceUnits="true" id="M_xmp_c" metaid="_8099d8a8-dd25-47cf-915e-c00420a9d421" name="Xanthosine_5__phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N4O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O13P3" hasOnlySubstanceUnits="true" id="M_dctp_c" metaid="a08642fb-55ee-4236-8a19-b968415caa32" name="dCTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N3O13P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO3" hasOnlySubstanceUnits="true" id="M_tyr_L_c" metaid="_50dc732a-90b1-4d27-bc77-30a603eeef26" name="L_Tyrosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H48O5" hasOnlySubstanceUnits="true" id="M_fusa_e" metaid="a4f39bd6-6d7a-4f83-ab21-906515cb01fe" name="fusidic_acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H48O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O3" hasOnlySubstanceUnits="true" id="M_4mop_c" metaid="ec7b9db0-e55f-4b85-a54e-67ba036de2ea" name="4_Methyl_2_oxopentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O14P3" hasOnlySubstanceUnits="true" id="M_gtp_c" metaid="f501b58d-8a76-4c4b-b5b0-0cb6af68405d" name="GTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O14P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="SO3" hasOnlySubstanceUnits="true" id="M_so3_c" metaid="_4530d80a-8366-4757-8e42-1a12017a710b" name="Sulfite" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: SO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N2O8P" hasOnlySubstanceUnits="true" id="M_dtmp_c" metaid="_8fa8df5e-f9a6-4a2a-9535-563565b3373c" name="dTMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N2O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Ca" hasOnlySubstanceUnits="true" id="M_ca2_p" metaid="a8f8369a-3d8f-471a-980e-ce1a5aa73b7f" name="M_ca2_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Ca</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="SO3" hasOnlySubstanceUnits="true" id="M_so3_e" metaid="_770add00-6e39-4481-92b6-c6c36783a157" name="M_so3_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: SO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="SO3" hasOnlySubstanceUnits="true" id="M_so3_p" metaid="_226de117-767b-413e-b81c-90865ae649c2" name="M_so3_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: SO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Ca" hasOnlySubstanceUnits="true" id="M_ca2_e" metaid="a50766e1-e816-4b32-bd89-9ea5ed091798" name="M_ca2_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Ca</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H13O10P" hasOnlySubstanceUnits="true" id="M_s7p_c" metaid="fe317856-0f85-41e7-8c01-d8fce29b7d8a" name="Sedoheptulose_7_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H13O10P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N2O6P" hasOnlySubstanceUnits="true" id="M_eig3p_c" metaid="_570003c0-6fb9-48ed-908a-2f1b9254e4ad" name="D_erythro_1__Imidazol_4_yl_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9N2O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Ca" hasOnlySubstanceUnits="true" id="M_ca2_c" metaid="_57786765-d0e3-4a2a-ac05-231fa2bfec2d" name="M_ca2_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Ca</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO4" hasOnlySubstanceUnits="true" id="M_asp_L_p" metaid="eccbb63e-15b0-4489-8866-49653582bf25" name="L_Aspartate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H6NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnathr_c" metaid="caa87872-92e6-48eb-8128-373ec9bdbf40" name="tRNA_Thr_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O5" hasOnlySubstanceUnits="true" id="M_mal_L_c" metaid="_97fc5cd6-bf2d-42b1-b914-4cefd2653eaf" name="L_Malate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H69O3" hasOnlySubstanceUnits="true" id="M_3ophb_c" metaid="f749e6a4-51c6-4758-9ee2-e1082b623069" name="3_Octaprenyl_4_hydroxybenzoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C47H69O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H62N1O8P1" hasOnlySubstanceUnits="true" id="M_pe141_c" metaid="f3f86fa3-01b6-4446-b2b3-aeaddbba06eb" name="phosphatidylethanolamine__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C33H62N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H4O2S8Fe2R" hasOnlySubstanceUnits="true" id="M_sufbcd_2fe2s_c" metaid="a5250cc2-3161-4938-b306-d352fac7e26c" name="M_sufbcd_2fe2s_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H4O2S8Fe2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="XH2" hasOnlySubstanceUnits="true" id="M_grxrd_c" metaid="_8b3a6c1e-90fb-4fbd-b760-309122e8d542" name="glutaredoxin__reduced_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: XH2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10NO4" hasOnlySubstanceUnits="true" id="M_acg5sa_c" metaid="_9a6a69d9-7816-41ad-8ab3-31de0f63cebd" name="N_Acetyl_L_glutamate_5_semialdehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H10NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H52O5" hasOnlySubstanceUnits="true" id="M_12dgr120_c" metaid="_3307887d-664c-42df-99b3-c0d5d6546753" name="1_2_Diacyl_sn_glycerol__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H52O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17N2O3" hasOnlySubstanceUnits="true" id="M_dtbt_c" metaid="_0af8ca97-a291-4301-b6f0-9f7dadb736a3" name="Dethiobiotin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H17N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H62N1O8P1" hasOnlySubstanceUnits="true" id="M_pe141_p" metaid="_4f68c804-0133-4b13-93a2-83e5d3e98b36" name="phosphatidylethanolamine__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C33H62N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C65H116O17P2" hasOnlySubstanceUnits="true" id="M_clpn141_p" metaid="b55e712c-9b04-4968-b46a-97f0ed08440c" name="cardiolipin__tetratetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C65H116O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13OS2" hasOnlySubstanceUnits="true" id="M_lipopb_c" metaid="_9197acaa-244b-4a66-8eed-d7562ebe699a" name="lipoate__protein_bound_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H13OS2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O6P" hasOnlySubstanceUnits="true" id="M_db4p_c" metaid="be6cc88e-8869-4f0a-95ea-1cec56d68bf0" name="3_4_dihydroxy_2_butanone_4_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H7O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3" hasOnlySubstanceUnits="true" id="M_glu1sa_c" metaid="f8659985-6b20-4514-bdbd-5c4e7b903e27" name="L_Glutamate_1_semialdehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H114N14O40" hasOnlySubstanceUnits="true" id="M_murein4p4p_p" metaid="_6a913d64-d6ad-45f8-8a62-2825c672fe2e" name="two_linked_disacharide_tetrapeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C74H114N14O40</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="NH4" hasOnlySubstanceUnits="true" id="M_nh4_p" metaid="e3e1fbef-5cca-40a9-a98c-22d68418d224" name="Ammonium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NH4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_xyl_D_p" metaid="_41893ac6-e7a9-4d67-896f-7d614296c101" name="M_xyl_D_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_D_p" metaid="cc2947f7-02aa-4881-b504-703d4e90a8de" name="D_Alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_xyl_D_c" metaid="_55996ed3-aa03-4e98-9d22-d87f9c5ced2f" name="M_xyl_D_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H8O2S6R" hasOnlySubstanceUnits="true" id="M_sufbcd_c" metaid="c5d03c04-fb33-411e-a839-cb6400a75a7e" name="M_sufbcd_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H8O2S6R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_xyl_D_e" metaid="_190803c7-1935-49e4-b876-02d5c43612c7" name="M_xyl_D_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe2_c" metaid="_83518b44-6823-4dea-81ce-fabf6225aa85" name="Iron_2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Fe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe2_e" metaid="_490d747d-96d9-44b5-a74f-ea08c79312b2" name="Iron_2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Fe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H64N3O20P2" hasOnlySubstanceUnits="true" id="M_u23ga_XF_c" metaid="d830b30e-b667-4e90-b157-3346d21687d9" name="M_u23ga_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H64N3O20P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O2" hasOnlySubstanceUnits="true" id="M_o2s_c" metaid="_03c73ba3-08aa-40cd-b94f-267fccb11f22" name="Superoxide_anion" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="NH4" hasOnlySubstanceUnits="true" id="M_nh4_e" metaid="_238ce08f-7369-4406-88eb-adef1a32991c" name="Ammonium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NH4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H26N7O17P3" hasOnlySubstanceUnits="true" id="M_nadph_c" metaid="_79cb1c70-0605-41de-a3db-25cfc1fba402" name="Nicotinamide_adenine_dinucleotide_phosphate___reduced" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H26N7O17P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="NH4" hasOnlySubstanceUnits="true" id="M_nh4_c" metaid="f4b835be-56be-4913-9e89-389293095d56" name="Ammonium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NH4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe2_p" metaid="e656a6e5-41a0-4119-a49e-ef75e9115fbf" name="Iron_2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Fe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H22N3O17P3" hasOnlySubstanceUnits="true" id="M_2p4c2me_c" metaid="_84c625cc-fc64-4646-9307-d5026b6bba60" name="2_phospho_4__cytidine_5__diphospho__2_C_methyl_D_erythritol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H22N3O17P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_D_c" metaid="be26013f-3974-45f5-86c0-9aede6e77f48" name="D_Alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_r5p_c" metaid="c107c6cb-e28d-4921-9a7e-0eb61b9914be" name="alpha_D_Ribose_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H52N6O19" hasOnlySubstanceUnits="true" id="M_anhgm3p_p" metaid="e188fdee-dc75-4563-beb0-502ac6769ee4" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tripeptide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H52N6O19</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H73O13P2" hasOnlySubstanceUnits="true" id="M_pgp160_c" metaid="_2e531889-f3ed-462b-9edc-1ef72593aeac" name="Phosphatidylglycerophosphate__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H73O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O10P" hasOnlySubstanceUnits="true" id="M_6pgc_c" metaid="b25c40ad-223d-4863-b211-23866e13e178" name="6_Phospho_D_gluconate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H10O10P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N2O14P3" hasOnlySubstanceUnits="true" id="M_dttp_c" metaid="_97d315e1-8977-45fa-abb6-cd2266001fbb" name="dTTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N2O14P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H55N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hoctaACP_c" metaid="cd8a2f3e-3417-498f-aedf-ccd745a14f68" name="R__3_Hydroxyoctadecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H55N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25N2O9PRS" hasOnlySubstanceUnits="true" id="M_actACP_c" metaid="_6d21b80a-2c5d-460d-b282-74d450bbc9d5" name="Acetoacetyl_ACP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H25N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H52N6O19" hasOnlySubstanceUnits="true" id="M_anhgm3p_c" metaid="_4c36a102-91f7-4e9a-bfe5-7fb7765935e6" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tripeptide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H52N6O19</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H27N2O10PRS" hasOnlySubstanceUnits="true" id="M_egmeACP_c" metaid="ae0a7dd9-3026-414e-8379-a1c2e313a528" name="Enoylglutaryl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H27N2O10PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H31N2O10PRS" hasOnlySubstanceUnits="true" id="M_pimACP_c" metaid="_4a6b456d-2fb7-48bc-afc1-f4e457b15704" name="Pimeloyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H31N2O10PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H20N7O6" hasOnlySubstanceUnits="true" id="M_methf_c" metaid="c972eb08-db57-420d-9381-e52b69f26d30" name="5_10_Methenyltetrahydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H20N7O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="O2" hasOnlySubstanceUnits="true" id="M_o2_p" metaid="_08237c0b-8d28-4610-8edb-c238b34de557" name="Dioxygen" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H73O13P2" hasOnlySubstanceUnits="true" id="M_pgp160_p" metaid="_810197d9-640e-48b3-bf2f-8d401750eff4" name="Phosphatidylglycerophosphate__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H73O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8NO6P" hasOnlySubstanceUnits="true" id="M_phom_c" metaid="_15898cdc-8b5e-4ebd-9877-8cc61ccd4930" name="O_Phospho_L_homoserine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H8NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H83N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdodec11eg_c" metaid="_46d36596-2ce2-41b5-b835-54c7218187b4" name="CDP_1_2_dioctadec_11_enoylglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C48H83N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H7O4" hasOnlySubstanceUnits="true" id="M_alac_S_c" metaid="_687953f9-6829-4dd8-823c-84bc6e6c29b3" name="S__2_Acetolactate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H7O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H75O8P" hasOnlySubstanceUnits="true" id="M_pa180_p" metaid="_32343c1c-0a3c-4091-86df-62277eff228c" name="1_2_dioctadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H75O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H52O5" hasOnlySubstanceUnits="true" id="M_12dgr120_p" metaid="ae07c5f0-d23b-484e-97b4-195dda7d543d" name="M_12dgr120_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H52O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O2" hasOnlySubstanceUnits="true" id="M_trp_L_c" metaid="_86423dcb-31bd-4177-b7eb-f7b9c3c27372" name="L_Tryptophan" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H39N5O23P2" hasOnlySubstanceUnits="true" id="M_uamag_c" metaid="_8c17a128-5d55-4f9a-9be4-f4911ab7e4fb" name="UDP_N_acetylmuramoyl_L_alanyl_D_glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C28H39N5O23P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C71H107N13O38" hasOnlySubstanceUnits="true" id="M_murein3px4p_p" metaid="a00f4e63-0a18-4c52-810f-238542cdfbc1" name="two_disacharide_linked_murein_units__tripeptide_crosslinked_tetrapeptide__A2pm__D_ala___middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C71H107N13O38</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21N2O7PRS" hasOnlySubstanceUnits="true" id="M_ACP_c" metaid="_472116a4-d2cf-45ba-915d-86b5cc105f06" name="acyl_carrier_protein" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H21N2O7PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O7PS" hasOnlySubstanceUnits="true" id="M_5mdru1p_c" metaid="_71100846-7171-4b77-8870-62eca0fd573d" name="M_5mdru1p_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O7PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O2" hasOnlySubstanceUnits="true" id="M_mthgxl_c" metaid="b887965c-9452-42d7-a22e-baa0a5a843ff" name="Methylglyoxal" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H4O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H75O8P" hasOnlySubstanceUnits="true" id="M_pa180_c" metaid="_3732d255-4381-4bb1-8ebd-a90d1432fbe8" name="1_2_dioctadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H75O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H41N2O9PRS" hasOnlySubstanceUnits="true" id="M_3oddecACP_c" metaid="_6ffd781b-5e15-4bb0-adc8-b0b05ec36855" name="3_Oxododecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H41N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H65O13P2" hasOnlySubstanceUnits="true" id="M_pgp140_c" metaid="_5fb87366-9fc9-4a49-b0f1-5c18e13a6018" name="Phosphatidylglycerophosphate__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H65O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3" hasOnlySubstanceUnits="true" id="M_ser_L_c" metaid="b666fa77-cef2-4c37-8d40-a553b728e8ad" name="L_Serine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H18N2O4" hasOnlySubstanceUnits="true" id="M_rdmbzi_c" metaid="_9bf3dd91-d3c2-4be1-83b9-d15eb375d1d3" name="N1__alpha_D_ribosyl__5_6_dimethylbenzimidazole" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H18N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H36N4O16" hasOnlySubstanceUnits="true" id="M_uppg3_c" metaid="aefadabf-4806-463b-8dcf-424db614e01e" name="Uroporphyrinogen_III" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C40H36N4O16</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2Se" hasOnlySubstanceUnits="true" id="M_selhcys_c" metaid="add92886-d68c-400d-a608-87b7d2655da8" name="Selenohomocysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO2Se</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3" hasOnlySubstanceUnits="true" id="M_hom_L_c" metaid="bf36d9c9-5f97-41cb-bd84-506bf8977cd0" name="L_Homoserine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7N" hasOnlySubstanceUnits="true" id="M_indole_c" metaid="c9ff885b-532d-49e6-ac9d-4ab3afdef128" name="M_indole_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H7N</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H36N7O18P3S" hasOnlySubstanceUnits="true" id="M_aacoa_c" metaid="d7c74ffc-762e-4458-8aa4-990be3b32b43" name="Acetoacetyl_CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H36N7O18P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H31N2O11PRS" hasOnlySubstanceUnits="true" id="M_opmeACP_c" metaid="_0a001492-7fe0-47cd-babd-0c3415d27b2b" name="3_Oxo_pimeloyl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H31N2O11PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2" hasOnlySubstanceUnits="true" id="M_gly_p" metaid="b35981b6-aee2-4541-988d-3eeb4e9a7c26" name="Glycine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H5NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5O3" hasOnlySubstanceUnits="true" id="M_acac_c" metaid="f897ec0e-395a-4bf1-bba0-bcb8e72c3648" name="Acetoacetate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O7P" hasOnlySubstanceUnits="true" id="M_dcmp_c" metaid="_6c621c31-b987-4e9f-9880-794aeff18760" name="dCMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N3O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O14P3" hasOnlySubstanceUnits="true" id="M_itp_c" metaid="_774db795-83b1-4585-8485-3bfa0156e766" name="ITP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N4O14P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2" hasOnlySubstanceUnits="true" id="M_gly_e" metaid="_11049dd9-1838-42ae-90b6-d7081ea742e8" name="Glycine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H5NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69N1O10P1" hasOnlySubstanceUnits="true" id="M_ps161_c" metaid="ac18d7e5-0b39-4fb7-b1fc-bb08d4f1ae96" name="phosphatidylserine__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H69N1O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2R" hasOnlySubstanceUnits="true" id="M_thrtrna_c" metaid="_860a736f-5b1f-44be-8559-f3a648922a5f" name="L_Threonyl_tRNA_Thr_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O2S10Fe4R" hasOnlySubstanceUnits="true" id="M_sufbcd_2fe2s2_c" metaid="a22e912a-1f29-4df2-9e79-f57714fe2a00" name="M_sufbcd_2fe2s2_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O2S10Fe4R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H61N9O28P2" hasOnlySubstanceUnits="true" id="M_ugmda_c" metaid="c3bd4715-8445-4d3c-bbde-ea68d321c37b" name="UDP_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C41H61N9O28P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2" hasOnlySubstanceUnits="true" id="M_gly_c" metaid="_1eb1bf75-0a4f-4556-b9a1-367bbb5da0f9" name="Glycine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H5NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H65O13P2" hasOnlySubstanceUnits="true" id="M_pgp140_p" metaid="_36585e3d-b923-4499-9905-981b8a14a1b8" name="Phosphatidylglycerophosphate__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H65O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="XH2" hasOnlySubstanceUnits="true" id="M_dsbcrd_p" metaid="_17c951f0-f66b-4570-bc25-0fc79729db39" name="protein_disulfide_isomerase_II__reduced_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: XH2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_B_c" metaid="_5eef8089-a73c-420e-a253-fd35255ab7c4" name="beta_Alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_xylu_D_c" metaid="cac99b80-c7f6-4b10-8f29-6c9bcbe43731" name="D_Xylulose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O2R" hasOnlySubstanceUnits="true" id="M_glntrna_c" metaid="_1afac2e2-a970-45d3-9b2a-a99818ff5717" name="L_Glutaminyl_tRNA_Gln_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10N2O2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="O2" hasOnlySubstanceUnits="true" id="M_o2_e" metaid="_7a3c546d-aae9-400f-8a68-2584af93deab" name="Dioxygen" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O2" hasOnlySubstanceUnits="true" id="M_o2_c" metaid="_920db3b3-4cfd-4d03-a1bb-99fb95379c36" name="Dioxygen" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H21N7O6" hasOnlySubstanceUnits="true" id="M_mlthf_c" metaid="d7a2c78b-dbaf-49fb-97e6-b7bdf8707ee6" name="5_10_Methylenetetrahydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H21N7O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O2" hasOnlySubstanceUnits="true" id="M_gcald_c" metaid="_4045042c-4961-478c-9a3c-9af1e66a3996" name="Glycolaldehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H4O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3" hasOnlySubstanceUnits="true" id="M_ser_L_p" metaid="_1194e4f2-dd8f-4074-9966-92524ee9094c" name="L_Serine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H21N3O16P2" hasOnlySubstanceUnits="true" id="M_udpLa4fn_c" metaid="_36f966e5-da63-4c99-8a43-558ae54009cb" name="M_udpLa4fn_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H21N3O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H51N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ocvac11eACP_c" metaid="db6136a2-7b96-4201-be7d-8455a2ca2886" name="3_oxo_cis_vacc_11_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H51N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3" hasOnlySubstanceUnits="true" id="M_ser_L_e" metaid="d0f98745-1684-4a23-bb58-b12c850f41a2" name="L_Serine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H14N3O" hasOnlySubstanceUnits="true" id="M_Ncbmpts_c" metaid="c2189df2-d53f-42e3-a49f-4df323c52e6d" name="M_Ncbmpts_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H14N3O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H19O2" hasOnlySubstanceUnits="true" id="M_dca_c" metaid="_66ed4545-1d94-4af3-b8db-d431ff6d993a" name="Decanoate__n_C10_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H19O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O2" hasOnlySubstanceUnits="true" id="M_acetol_c" metaid="e01fadbd-2425-46dc-bf6a-0d89e3023690" name="Acetol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H6O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4" hasOnlySubstanceUnits="true" id="M_26dap_LL_c" metaid="_384c9764-e06f-4341-8700-cc42fb02c829" name="LL_2_6_Diaminoheptanedioate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H14N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H19O2" hasOnlySubstanceUnits="true" id="M_dca_p" metaid="e4ee61d6-be90-4fe4-a39a-b3fdf5f10d40" name="Decanoate__n_C10_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H19O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7N2" hasOnlySubstanceUnits="true" id="M_aprop_c" metaid="b4654be9-f0de-481b-99db-20c6c45e318b" name="alpha_Aminopropiononitrile" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7N2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H70N1O8P1" hasOnlySubstanceUnits="true" id="M_pe161_c" metaid="b4642c87-1848-4d86-a0e9-43f209ea22f7" name="phosphatidylethanolamine__dihexadec_9enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H70N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H70N1O8P1" hasOnlySubstanceUnits="true" id="M_pe161_p" metaid="_06e1ce0a-e5fd-4faa-bb0a-10460b9bbb83" name="phosphatidylethanolamine__dihexadec_9enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H70N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O12P3" hasOnlySubstanceUnits="true" id="M_datp_c" metaid="c8230291-6069-4824-b5c3-bd4a92f40ceb" name="dATP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O12P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O8P" hasOnlySubstanceUnits="true" id="M_nmn_p" metaid="_90a0300f-a58a-43a6-bdaa-a8f418893a53" name="M_nmn_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H14N2O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H27N3O7" hasOnlySubstanceUnits="true" id="M_mincyc_p" metaid="_9eec1621-5626-4005-9798-12f0bd29d07d" name="minocycline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H27N3O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H27N3O7" hasOnlySubstanceUnits="true" id="M_mincyc_e" metaid="_97f9c245-fc34-4fdc-82cc-125c0a03dba5" name="minocycline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H27N3O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H31N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hhexACP_c" metaid="_99f7a9f7-c421-452d-a75f-4e1fc7a93682" name="R__3_Hydroxyhexanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H31N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O8P" hasOnlySubstanceUnits="true" id="M_nmn_c" metaid="c527a149-b573-43fd-a723-0b38da30fd60" name="NMN" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H14N2O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O8P" hasOnlySubstanceUnits="true" id="M_nmn_e" metaid="b74a8305-5c42-4e87-93fe-43e5523f2d8c" name="M_nmn_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H14N2O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O6" hasOnlySubstanceUnits="true" id="M_dkglc_c" metaid="_0aff4c17-50d4-459d-8d62-799a5a7a6700" name="2_deoxy_5_keto_D_gluconate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13N3O3" hasOnlySubstanceUnits="true" id="M_citr_L_c" metaid="b702e36d-a82d-44d2-b37e-3c02741b65b2" name="L_Citrulline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13N3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H66O10P1" hasOnlySubstanceUnits="true" id="M_pg140_c" metaid="c76e89dc-a277-4202-95f8-3ae6b5867643" name="Phosphatidylglycerol__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H66O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H14N5O8P" hasOnlySubstanceUnits="true" id="M_25drapp_c" metaid="e80af714-1c96-4b5b-bdb7-2687affcb2e8" name="2_5_Diamino_6__ribosylamino__4__3H__pyrimidinone_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H14N5O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5O3" hasOnlySubstanceUnits="true" id="M_4hbz_c" metaid="_01257ba0-9cfe-4e3c-92a6-a1755daa91fc" name="4_Hydroxybenzoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N5O20P5" hasOnlySubstanceUnits="true" id="M_gdptp_c" metaid="_74530af1-b0ef-4b97-8d8d-d032e3302ef1" name="Guanosine_3__diphosphate_5__triphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N5O20P5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7N" hasOnlySubstanceUnits="true" id="M_indole_p" metaid="c4486849-9f1e-493a-a783-f4e0f11b44a3" name="M_indole_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H7N</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N4OR" hasOnlySubstanceUnits="true" id="M_argtrna_c" metaid="a29f6a64-1972-4bdd-ab20-a07401403bd7" name="L_Arginyl_tRNA_Arg_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N4OR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="S2Fe2" hasOnlySubstanceUnits="true" id="M_2fe2s_c" metaid="_042234e1-a6d4-4292-b6e0-44286a168d5f" name="2Fe_2S__iron_sulfur_cluster" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: S2Fe2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H36FeN4O16" hasOnlySubstanceUnits="true" id="M_sheme_c" metaid="_44458f90-77ca-472f-9d9c-544e52c2a5c1" name="M_sheme_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H36FeN4O16</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H7O3S" hasOnlySubstanceUnits="true" id="M_2kmb_c" metaid="dc176f49-8ff2-46a7-8d86-9197a8296b77" name="M_2kmb_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H7O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H6N2O" hasOnlySubstanceUnits="true" id="M_ncam_c" metaid="_069e618e-c1cd-4e94-8c46-163f9c8650ee" name="Nicotinamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H6N2O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H66O10P1" hasOnlySubstanceUnits="true" id="M_pg140_p" metaid="_21d0ab57-2ce0-4bb3-ac3b-3ccd08dd0f74" name="Phosphatidylglycerol__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H66O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C95H152N8O28P2" hasOnlySubstanceUnits="true" id="M_uaagmda_c" metaid="_839ad1c3-0c7f-4c19-acca-2baf0c1dfe00" name="Undecaprenyl_diphospho_N_acetylmuramoyl__N_acetylglucosamine__L_ala_D_glu_meso_2_6_diaminopimeloyl_D_ala_D_ala" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C95H152N8O28P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7N" hasOnlySubstanceUnits="true" id="M_indole_e" metaid="c7b03900-6569-43ef-b1d4-d52ac716312c" name="M_indole_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H7N</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO4" hasOnlySubstanceUnits="true" id="M_glu_L_c" metaid="c88ceaf9-ec64-4a8f-ad11-4f5278c32933" name="L_Glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N2O18P2" hasOnlySubstanceUnits="true" id="M_udpglcur_c" metaid="ee49d88c-916d-4d33-a508-9c2c2e573e93" name="UDP_D_glucuronate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H19N2O18P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4" hasOnlySubstanceUnits="true" id="M_dgsn_c" metaid="_8a68773e-a15e-434a-9255-30db16dd9f60" name="Deoxyguanosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N5O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O8P" hasOnlySubstanceUnits="true" id="M_gmp_c" metaid="_1fec28c5-4bfe-4f14-88cf-9c69eb01035b" name="GMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H20N3O8S" hasOnlySubstanceUnits="true" id="M_lgt_S_c" metaid="_0f9a8114-4c5e-4b9c-96bb-3f1fd1496125" name="R__S_Lactoylglutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C13H20N3O8S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H24N6O15P2" hasOnlySubstanceUnits="true" id="M_dnad_c" metaid="_54379ba1-6b67-419c-b014-16b8f6e4f0ec" name="Deamino_NAD_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H24N6O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H16NO5" hasOnlySubstanceUnits="true" id="M_pnto_R_c" metaid="a8479452-3800-4d7d-9011-e72a1d15395e" name="R__Pantothenate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H16NO5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CH3NO" hasOnlySubstanceUnits="true" id="M_frmd_c" metaid="_8fdc8aae-84a9-44e2-bfa6-b23c27efad70" name="Formamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH3NO</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H81O13P2" hasOnlySubstanceUnits="true" id="M_pgp180_c" metaid="_3c1a78a0-2626-4e14-a3f8-920fe080e89b" name="Phosphatidylglycerophosphate__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H81O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O3" hasOnlySubstanceUnits="true" id="M_glyclt_p" metaid="_008a959d-4c73-4490-9e90-bfaaa2800594" name="Glycolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="NO3" hasOnlySubstanceUnits="true" id="M_no3_p" metaid="a9461d95-59e4-4416-be08-825cfd9ab462" name="Nitrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42N7O17P3S" hasOnlySubstanceUnits="true" id="M_hxcoa_c" metaid="_62173060-2365-4b0a-844b-ebe9570612c9" name="Hexanoyl_CoA__n_C6_0CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H42N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H30N5O9" hasOnlySubstanceUnits="true" id="M_LalaDgluMdapDala_c" metaid="bf130d8a-ea65-4f7a-8fba-05c81f75a16c" name="L_alanine_D_glutamate_meso_2_6_diaminoheptanedioate_D_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H30N5O9</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O6" hasOnlySubstanceUnits="true" id="M_tartr_D_c" metaid="_3c55486e-a3b2-41b5-9259-17fa9bced04f" name="M_tartr_D_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_glc_D_p" metaid="fc4e897f-6c9e-4db6-9e88-e152a0314e66" name="D_Glucose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc3p_p" metaid="_3d54e1ba-ed15-451c-9697-d90757980854" name="Glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO4" hasOnlySubstanceUnits="true" id="M_glu_L_p" metaid="_2502dd0a-d150-47fd-8c37-bcf8aca3ee2e" name="L_Glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C114H172N22O59" hasOnlySubstanceUnits="true" id="M_murein5px4px4p_p" metaid="_982b8cc4-953e-4d0a-9e96-4b7c42b10abd" name="three_disacharide_linked_murein_units__pentapeptide_crosslinked_tetrapeptide__A2pm__D_ala__tetrapeptide_corsslinked_tetrapeptide__A2pm__D_ala____middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C114H172N22O59</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="XH2" hasOnlySubstanceUnits="true" id="M_dsbdrd_c" metaid="a64e1365-cc16-429a-b6d5-c065eab028b0" name="fused_thiol_disulfide_interchange_protein__reduced_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: XH2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO4" hasOnlySubstanceUnits="true" id="M_chitos_c" metaid="_2bcac2b8-afeb-48f4-ae21-030887e3a747" name="Chitosan" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="SFe2" hasOnlySubstanceUnits="true" id="M_2fe1s_c" metaid="_17a6cca5-606c-4941-b5d6-7835d25c528a" name="2Fe_1S__desulfurated_iron_sulfur_cluster" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: SFe2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O7P" hasOnlySubstanceUnits="true" id="M_e4p_c" metaid="_39835147-d3d9-49a8-885f-283d08d181fd" name="D_Erythrose_4_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H7O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc3p_e" metaid="e5abd030-9340-4a4e-bbbd-5b21d8656a66" name="Glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="NO3" hasOnlySubstanceUnits="true" id="M_no3_c" metaid="f978f7a7-8bf7-4482-b9c2-beca681339e9" name="Nitrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H55O4" hasOnlySubstanceUnits="true" id="M_2hp6mobq_me_c" metaid="_33497ea1-1610-4c76-9877-727932b040a4" name="2_Hexaprenyl_3_methyl_5_hydroxy_6_methoxy_1_4_benzoquinone" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H55O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O3" hasOnlySubstanceUnits="true" id="M_glyclt_e" metaid="_554d2a97-1bee-4264-9fa6-09be7456bcbb" name="Glycolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O3" hasOnlySubstanceUnits="true" id="M_glyclt_c" metaid="_65b2183a-ddcf-4381-9de2-a107d713f3a8" name="Glycolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H30N5O9" hasOnlySubstanceUnits="true" id="M_LalaDgluMdapDala_p" metaid="_1d4db780-a420-49a8-83b6-7216e38f38dd" name="L_alanine_D_glutamate_meso_2_6_diaminoheptanedioate_D_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H30N5O9</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="NO3" hasOnlySubstanceUnits="true" id="M_no3_e" metaid="e581c969-9254-4298-8248-0014f6c0c620" name="Nitrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc3p_c" metaid="_6feed938-b90a-4460-8d02-c8d50ef986ac" name="Glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H81O13P2" hasOnlySubstanceUnits="true" id="M_pgp180_p" metaid="_2858a7ce-a73d-4680-9ac4-c5dac0db95a5" name="Phosphatidylglycerophosphate__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H81O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO4" hasOnlySubstanceUnits="true" id="M_glu_L_e" metaid="b2a967d6-406d-4bcc-ab0f-b663177bbcdc" name="L_Glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H31N2O10PRS" hasOnlySubstanceUnits="true" id="M_epmeACP_c" metaid="_21d1ec1b-e598-4833-9f17-a385008ae05b" name="Enoylpimeloyl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H31N2O10PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="H2" hasOnlySubstanceUnits="true" id="M_h2_p" metaid="f9691f5b-e9a3-46e9-ba1f-01fc7b113133" name="M_h2_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_glc_D_c" metaid="_6565bacc-687b-449e-a5f4-9ca05d63f802" name="D_Glucose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_glc_D_e" metaid="_72aab22e-24dc-4b6f-8b30-b0522ba63937" name="D_Glucose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NOR" hasOnlySubstanceUnits="true" id="M_phetrna_c" metaid="c3fe7524-0ceb-4b49-936a-7221e11250e1" name="L_Phenylalanyl_tRNA_Phe_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11NOR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H53N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ooctdACP_c" metaid="_13fdd979-fb86-4511-bba9-1aac7d2c3f2e" name="3_Oxooctadecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H53N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O7" hasOnlySubstanceUnits="true" id="M_glcn_c" metaid="cb536510-dcdf-4b75-a366-17ae03734737" name="D_Gluconate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O2" hasOnlySubstanceUnits="true" id="M_ppa_c" metaid="_9674bdfc-fb67-4d2a-8e5a-6b29aa955e0e" name="Propionate__n_C3_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H18NO8" hasOnlySubstanceUnits="true" id="M_acmum_p" metaid="_8d4998e5-1b2b-460a-b8bd-129c29763583" name="M_acmum_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H18NO8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H74O10P1" hasOnlySubstanceUnits="true" id="M_pg160_c" metaid="_121f3ff0-ac59-41a0-a978-2201a7442d0c" name="Phosphatidylglycerol__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H74O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6NO6P" hasOnlySubstanceUnits="true" id="M_pser_L_c" metaid="e14edc1e-83a9-4b8f-8b17-a9be3ffae083" name="O_Phospho_L_serine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H6NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3" hasOnlySubstanceUnits="true" id="M_athr_L_c" metaid="_1c12eff7-8faa-474b-a5cd-871c7482cb12" name="L_Allo_threonine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3S" hasOnlySubstanceUnits="true" id="M_cgly_p" metaid="_3f734818-c32c-4729-a252-3045cff50a39" name="Cys_Gly" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10N2O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N6O5S" hasOnlySubstanceUnits="true" id="M_ahcys_c" metaid="_303ab19e-02a1-48ac-8d2c-e25e1dbe9c1e" name="S_Adenosyl_L_homocysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H20N6O5S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="H2" hasOnlySubstanceUnits="true" id="M_h2_e" metaid="bcf85acc-a44f-467a-9cc5-c5e5f281e208" name="M_h2_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45N2O8PRS" hasOnlySubstanceUnits="true" id="M_tdeACP_c" metaid="_83fee56a-50df-467a-8ab0-75d7032b0bcb" name="cis_tetradec_7_enoyl__acyl_carrier_protein___n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H45N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H2" hasOnlySubstanceUnits="true" id="M_h2_c" metaid="_2155aa07-cf0e-4b2f-a153-5d4c88585a86" name="H2" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10N2O11P" hasOnlySubstanceUnits="true" id="M_orot5p_c" metaid="_39237433-67e9-4f38-a4bd-d779b10786ce" name="Orotidine_5__phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H10N2O11P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_man1p_c" metaid="_3c7cb235-19e6-4f35-8408-9af3a85ca92b" name="D_Mannose_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="XH" hasOnlySubstanceUnits="true" id="M_flxr_c" metaid="_7a8b6c4f-b4c2-4987-9e52-5356b96bfc4b" name="M_flxr_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: XH</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O3" hasOnlySubstanceUnits="true" id="M_3mop_c" metaid="a523d445-008c-4f73-91d3-478484d82d72" name="S__3_Methyl_2_oxopentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H56FeN4O5" hasOnlySubstanceUnits="true" id="M_hemeO_c" metaid="_0862868f-02c0-4967-861e-a89874c6b49a" name="Heme_O" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C49H56FeN4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O7" hasOnlySubstanceUnits="true" id="M_glcn_p" metaid="_30675c26-1429-4eb7-a42f-3b346589fbef" name="D_Gluconate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H74O10P1" hasOnlySubstanceUnits="true" id="M_pg160_p" metaid="_41f5eda1-869c-44af-a7a1-e2ee7a28e24f" name="Phosphatidylglycerol__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H74O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3S" hasOnlySubstanceUnits="true" id="M_cgly_c" metaid="_8f4859cd-9f82-4c9a-88b1-2dd331db4644" name="Cys_Gly" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10N2O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O4" hasOnlySubstanceUnits="true" id="M_fum_c" metaid="_31430382-6fc5-4576-ae42-16748a9951bf" name="Fumarate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_f6p_c" metaid="e58dcf26-8f99-4c9c-a634-506b81f9fb2a" name="D_Fructose_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47N2O8PRS" hasOnlySubstanceUnits="true" id="M_t3c9palmeACP_c" metaid="_9aeb9984-cc71-424e-8288-087fa414f07d" name="trans_3_cis_9_palmitoleoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H47N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O4" hasOnlySubstanceUnits="true" id="M_fum_e" metaid="fc9ab27f-4e10-4baa-b4d7-a2d9134f3e3f" name="Fumarate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_ru5p_L_c" metaid="_5aa83291-7ce9-4bc9-909f-2193bc0ed427" name="M_ru5p_L_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12Cl2N2O5" hasOnlySubstanceUnits="true" id="M_cm_p" metaid="_397a31ba-d391-49b7-b384-000d062a6aaa" name="Chloramphenicol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12Cl2N2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H58N4O12" hasOnlySubstanceUnits="true" id="M_rfamp_e" metaid="_352e74f1-4166-49d0-bb20-fb3eb7aeb53f" name="rifampin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C43H58N4O12</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C1O2X" hasOnlySubstanceUnits="true" id="M_moadcoo_c" metaid="a8316226-bed9-4f26-93a8-6be58383b8b6" name="MoaD_Protein_with_carboxylate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C1O2X</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51N2O8PRS" hasOnlySubstanceUnits="true" id="M_palmACP_c" metaid="_3762fc7b-6549-4a88-9003-48b60822fd9b" name="Palmitoyl_ACP__n_C16_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H51N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12Cl2N2O5" hasOnlySubstanceUnits="true" id="M_cm_e" metaid="_9a640f21-052a-4b92-9827-f460860e5f2a" name="Chloramphenicol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12Cl2N2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H58N4O12" hasOnlySubstanceUnits="true" id="M_rfamp_p" metaid="_9e523d1e-bcfb-4063-b0b4-9b52feb69de7" name="rifampin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C43H58N4O12</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O4" hasOnlySubstanceUnits="true" id="M_fum_p" metaid="_074c5051-13ae-413f-946f-848579c350a9" name="Fumarate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7NO3" hasOnlySubstanceUnits="true" id="M_2aobut_c" metaid="_846910d3-7931-4ddb-9936-20ee14b3ad7e" name="L_2_Amino_3_oxobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H7NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H64O5" hasOnlySubstanceUnits="true" id="M_12dgr161_c" metaid="_73cd75d1-afde-4e2b-9ae1-eee238056f1f" name="1_2_Diacyl_sn_glycerol__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H64O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H51N2O8PRS" hasOnlySubstanceUnits="true" id="M_t3c11vaceACP_c" metaid="_2e9bdb87-6192-421d-bd4b-73afeb5524eb" name="trans_3_cis_11_vacceoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H51N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12NO9P" hasOnlySubstanceUnits="true" id="M_nicrnt_c" metaid="cf878e02-dec2-4a25-aafa-e0c88bc7cc46" name="Nicotinate_D_ribonucleotide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12NO9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O7" hasOnlySubstanceUnits="true" id="M_icit_p" metaid="_2ea942c4-3bb3-4f7b-a6d2-b3dd291513f3" name="M_icit_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H5O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H24N2O8" hasOnlySubstanceUnits="true" id="M_ttrcyc_p" metaid="c872ba42-6e97-4150-8915-a81262ca281c" name="tetracycline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C22H24N2O8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O10P2" hasOnlySubstanceUnits="true" id="M_13dpg_c" metaid="_270a294f-95f4-44eb-b2b5-d1521a2fff09" name="3_Phospho_D_glyceroyl_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H4O10P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H24N2O8" hasOnlySubstanceUnits="true" id="M_ttrcyc_e" metaid="f670aae4-f0dd-4f6b-8ed1-a4fa8390d25a" name="tetracycline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C22H24N2O8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H53N2O8PRS" hasOnlySubstanceUnits="true" id="M_toctd2eACP_c" metaid="_8280755e-4003-4945-8e15-4f0cb979c977" name="trans_octadec_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H53N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O4" hasOnlySubstanceUnits="true" id="M_2ahbut_c" metaid="d2a9e733-d780-46e4-830b-4945c038cd20" name="S__2_Aceto_2_hydroxybutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H122O61" hasOnlySubstanceUnits="true" id="M_dextrin_e" metaid="aba1bc8e-b8b7-490e-956a-4dee1f2680ab" name="M_dextrin_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C72H122O61</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O6" hasOnlySubstanceUnits="true" id="M_g15l_p" metaid="_0a17ce51-04cc-417a-ab06-c85a5e0c8db2" name="D_Glucono_1_5_lactone" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H10O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O7" hasOnlySubstanceUnits="true" id="M_icit_c" metaid="_390ea3f2-ac4d-4790-9ee7-cdb1988ba3c1" name="Isocitrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H5O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaarg_c" metaid="_46cb99e1-98d9-44f4-8f95-544977a6f5e7" name="tRNA_Arg_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O6PS" hasOnlySubstanceUnits="true" id="M_dkmpp_c" metaid="d3778e9a-8347-4952-b345-6ecea063cafe" name="M_dkmpp_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O6PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H16NO7" hasOnlySubstanceUnits="true" id="M_anhm_c" metaid="d8f281e8-5887-440f-9c17-f97971d3c49e" name="1_6_anhydrous_N_Acetylmuramate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H16NO7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O3" hasOnlySubstanceUnits="true" id="M_dad_5_c" metaid="_162bf943-8215-436c-9a89-d5c63f6d3dfb" name="5__Deoxyadenosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Mn" hasOnlySubstanceUnits="true" id="M_mn2_e" metaid="_0ea01ae0-7a5d-47a4-8207-c196a812ded6" name="Mn2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Mn</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Mn" hasOnlySubstanceUnits="true" id="M_mn2_c" metaid="_83d9933b-0372-4a51-bfc7-169bdd775534" name="Manganese_II_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Mn</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O6" hasOnlySubstanceUnits="true" id="M_dglca_c" metaid="_03dac608-6eae-4ee4-91b3-0618ed2fc166" name="5_deoxy_D_glucuronate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O3" hasOnlySubstanceUnits="true" id="M_lac_D_c" metaid="_92fe2025-bab0-45f4-89f0-5a654c84b81c" name="D_Lactate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O3" hasOnlySubstanceUnits="true" id="M_dhbpt_c" metaid="_2ef223f7-d5f3-4373-8f36-0fbb847f6ab2" name="6_7_Dihydrobiopterin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H13N5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15N3O8P" hasOnlySubstanceUnits="true" id="M_fpram_c" metaid="_11f9ced6-220d-4c17-bd17-96e8243fe635" name="2__Formamido__N1__5_phospho_D_ribosyl_acetamidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H15N3O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H104N2O23P2" hasOnlySubstanceUnits="true" id="M_lipidA_XF_c" metaid="edce8bf3-d3c8-44d2-a24c-327cfbec2374" name="M_lipidA_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C56H104N2O23P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H2O6P" hasOnlySubstanceUnits="true" id="M_pep_c" metaid="_2765b289-a330-4856-81c4-71992fa0bb32" name="Phosphoenolpyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H2O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NOSR" hasOnlySubstanceUnits="true" id="M_mettrna_c" metaid="_94574803-7c62-41d4-8341-a609b551a430" name="L_Methionyl_tRNA__Met_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NOSR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Mn" hasOnlySubstanceUnits="true" id="M_mn2_p" metaid="_63cac064-c94d-4dde-b64a-11d3f308d2f5" name="Mn2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Mn</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H36N7O17P3S" hasOnlySubstanceUnits="true" id="M_ppcoa_c" metaid="a27fc8f7-130b-4386-849e-70cb867096c9" name="Propanoyl_CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C24H36N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H39N2O8PRS" hasOnlySubstanceUnits="true" id="M_t3c5ddeceACP_c" metaid="_4bc7d4c1-4433-455a-8181-396b0a525b28" name="trans_3_cis_5_dodecenoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H39N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H58N1O8P1" hasOnlySubstanceUnits="true" id="M_pe120_c" metaid="_2c84ea61-f646-49c6-ac1e-dbc1f2fdf85d" name="phosphatidylethanolamine__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H58N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N3O" hasOnlySubstanceUnits="true" id="M_histd_c" metaid="d5fb9dd9-a2f3-407e-9b0d-a719c112bc83" name="L_Histidinol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12N3O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H56O5" hasOnlySubstanceUnits="true" id="M_12dgr141_c" metaid="_16a0df8e-1911-417d-b125-2918f2299f9a" name="1_2_Diacyl_sn_glycerol__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H56O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H58N1O8P1" hasOnlySubstanceUnits="true" id="M_pe120_p" metaid="_2efe61fc-09ae-4a2b-b42e-7f9d89a4bb36" name="phosphatidylethanolamine__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H58N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H3NO4" hasOnlySubstanceUnits="true" id="M_quln_c" metaid="_7e704a7e-2d52-4f55-a31c-bb6bf13405bc" name="Quinolinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H3NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H2O6P" hasOnlySubstanceUnits="true" id="M_2pglyc_c" metaid="a9c779bc-73bb-429c-82ac-f1d5e8105b9e" name="2_Phosphoglycolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H2O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3" hasOnlySubstanceUnits="true" id="M_thr_L_e" metaid="_7ed40c3c-689a-4997-b5ad-0079ba185554" name="L_Threonine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3" hasOnlySubstanceUnits="true" id="M_thr_L_c" metaid="ccef9837-5d96-4e60-9c0c-2672a5629645" name="L_Threonine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H25O2" hasOnlySubstanceUnits="true" id="M_ttdcea_p" metaid="f59f3bc5-3c3c-4fd6-ae5b-939942a79ce0" name="tetradecenoate__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H25O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8O4" hasOnlySubstanceUnits="true" id="M_2ippm_c" metaid="d51257c2-db77-41ea-9b03-b8d41edcae98" name="2_Isopropylmaleate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H8O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO7P" hasOnlySubstanceUnits="true" id="M_glu5p_c" metaid="_4523a949-71c1-409d-9cba-ec22cd14f73c" name="L_Glutamate_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8NO7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4" hasOnlySubstanceUnits="true" id="M_26dap_M_e" metaid="_560a0eeb-b33c-4ace-aef9-bcac1be88ff4" name="M_26dap_M_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H14N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14NO5" hasOnlySubstanceUnits="true" id="M_gam_p" metaid="_7d19cc7c-930d-466e-845e-2aedfc790de2" name="M_gam_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H14NO5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H27N7O14P2" hasOnlySubstanceUnits="true" id="M_nadh_c" metaid="feac70b0-8dd4-49dd-9afb-0fc93df5401c" name="Nicotinamide_adenine_dinucleotide___reduced" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H27N7O14P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H25O2" hasOnlySubstanceUnits="true" id="M_ttdcea_e" metaid="bafb266d-7642-47fc-bdc2-40a2f41bf73b" name="tetradecenoate__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H25O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C63H103NO12P2" hasOnlySubstanceUnits="true" id="M_unaga_c" metaid="_97140357-6131-49e4-9c24-ca9e51a3081f" name="M_unaga_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C63H103NO12P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaphe_c" metaid="_36e668f0-8836-43fc-b8c4-e22366d250a1" name="tRNA_Phe_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O6P" hasOnlySubstanceUnits="true" id="M_damp_c" metaid="f801f755-6314-40e9-9e9d-68dd8967bcbf" name="dAMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4" hasOnlySubstanceUnits="true" id="M_26dap_M_p" metaid="_8537f091-4c5b-4e94-9386-71ef84199284" name="M_26dap_M_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H14N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H25O2" hasOnlySubstanceUnits="true" id="M_ttdcea_c" metaid="_7387439c-8c10-4deb-b715-adda9dd0959a" name="M_ttdcea_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H25O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14NO5" hasOnlySubstanceUnits="true" id="M_gam_e" metaid="bf3397ff-7c27-49cf-a5e5-8f48f161aba5" name="M_gam_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H14NO5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O4" hasOnlySubstanceUnits="true" id="M_din_c" metaid="_9c2d087d-1c06-4a51-9bc1-8b8202068d0c" name="Deoxyinosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H2O7P" hasOnlySubstanceUnits="true" id="M_3php_c" metaid="_0fb5b963-9894-4c7e-900d-7d5b7f4ccbb1" name="3_Phosphohydroxypyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H2O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4" hasOnlySubstanceUnits="true" id="M_26dap_M_c" metaid="_6b4708cc-8d37-4523-a33a-8a3f548e9865" name="meso_2_6_Diaminoheptanedioate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H14N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7NO3" hasOnlySubstanceUnits="true" id="M_aspsa_c" metaid="_1995c6c7-5118-4172-82bb-296c56d148c8" name="L_Aspartate_4_semialdehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H7NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="NO" hasOnlySubstanceUnits="true" id="M_no_c" metaid="f5066035-7862-4549-9d2b-5e71f281bf18" name="Nitric_oxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NO</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H74O3" hasOnlySubstanceUnits="true" id="M_2ommbl_c" metaid="_40ed71e3-12af-489c-a5e3-a5ba53cb72bc" name="2_Octaprenyl_3_methyl_6_methoxy__1_4_benzoquinol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C48H74O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25N4O8" hasOnlySubstanceUnits="true" id="M_LalaDgluMdap_p" metaid="e73ed5ad-98a2-4070-80bc-d3ece99cd822" name="L_alanine_D_glutamate_meso_2_6_diaminoheptanedioate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H25N4O8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="NO" hasOnlySubstanceUnits="true" id="M_no_e" metaid="a0e6dc03-ad15-426d-9a8e-80908dccacac" name="Nitric_oxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NO</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25N4O8" hasOnlySubstanceUnits="true" id="M_LalaDgluMdap_c" metaid="_8624a039-983f-4473-82b6-1b7be44491fa" name="L_alanine_D_glutamate_meso_2_6_diaminoheptanedioate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H25N4O8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CO" hasOnlySubstanceUnits="true" id="M_co_c" metaid="f711aaca-47ad-450e-8cca-6070cf65cd51" name="M_co_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CO</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O10P2" hasOnlySubstanceUnits="true" id="M_dcdp_c" metaid="d547ceea-a425-42bc-87d6-39f4026f90a9" name="dCDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N3O10P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2" hasOnlySubstanceUnits="true" id="M_for_e" metaid="_1cf5bbb7-1e75-4de6-bf05-dc6db17d2a86" name="Formate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CHO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H77N1O10P1" hasOnlySubstanceUnits="true" id="M_ps181_c" metaid="b0f4bfe5-188c-46b3-a87f-2c85f2a79d71" name="phosphatidylserine__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H77N1O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C87H139N7O23P2" hasOnlySubstanceUnits="true" id="M_uagmda_c" metaid="_52361ad1-ff9e-4601-b62f-10d13922c6b9" name="Undecaprenyl_diphospho_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C87H139N7O23P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O11P2" hasOnlySubstanceUnits="true" id="M_gdp_c" metaid="_4d576e1f-6b4a-47cc-963f-9390631ffd78" name="GDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O11P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O14P3" hasOnlySubstanceUnits="true" id="M_ctp_c" metaid="e2a3d3fa-1d81-45c3-8f1b-92f4ffeecca8" name="CTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N3O14P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4S" hasOnlySubstanceUnits="true" id="M_cyst_L_c" metaid="_04430647-1956-47c6-b6e4-6ddb82c1762f" name="L_Cystathionine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H14N2O4S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2" hasOnlySubstanceUnits="true" id="M_for_c" metaid="_90d52229-a7c1-4b06-b990-b044c20d6001" name="Formate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CHO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H22N2O17P2" hasOnlySubstanceUnits="true" id="M_udpg_c" metaid="_25040098-e003-4d31-b33b-a7110bc635b2" name="UDPglucose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H22N2O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8O14P3" hasOnlySubstanceUnits="true" id="M_prpp_c" metaid="_1fa598cf-8d1c-40fa-ae87-674bb649493b" name="5_Phospho_alpha_D_ribose_1_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8O14P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10N5O" hasOnlySubstanceUnits="true" id="M_preq1_c" metaid="_7561f96b-0fd2-4731-9323-d56c511ab333" name="7_aminomethyl_7_deazaguanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H10N5O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C73H132O17P2" hasOnlySubstanceUnits="true" id="M_clpn161_p" metaid="_563f51c7-0c46-4fc5-8a8d-ba9a4903ad18" name="cardiolipin__tetrahexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C73H132O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe3_e" metaid="_48392e55-55a3-43d1-b536-869f6a74fd42" name="Iron_3_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Fe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H56O5" hasOnlySubstanceUnits="true" id="M_12dgr141_p" metaid="_754f9919-8169-46b9-8786-2863fde130ee" name="M_12dgr141_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H56O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe3_c" metaid="_8a3ed28f-207c-43fe-b93d-1cc888d93a36" name="Iron_3_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Fe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H20NO6P" hasOnlySubstanceUnits="true" id="M_g3pc_p" metaid="_3038c5c8-ce15-40c6-abc5-8979b9a20954" name="sn_Glycero_3_phosphocholine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H20NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H72O3" hasOnlySubstanceUnits="true" id="M_2ombzl_c" metaid="_198940b7-84bf-4c2e-8459-5c043ce406c2" name="2_Octaprenyl_6_methoxy_1_4_benzoquinol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C47H72O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H33N2O8PRS" hasOnlySubstanceUnits="true" id="M_toct2eACP_c" metaid="a191ac13-d59a-4a6b-ae86-5a90fba15916" name="trans_Oct_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H33N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C120H186N24O63" hasOnlySubstanceUnits="true" id="M_murein5p5p5p_p" metaid="_58b3d38e-2db7-4756-83ac-4ccc4b40fed5" name="three_linked_disacharide_pentapeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C120H186N24O63</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10NO2SR" hasOnlySubstanceUnits="true" id="M_fmettrna_c" metaid="be2f4cde-d70c-4406-8a4e-b5a64ac4fcd0" name="N_Formylmethionyl_tRNA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H10NO2SR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="NO" hasOnlySubstanceUnits="true" id="M_no_p" metaid="b5ab317d-edc9-4068-9a7a-7877a6a0be75" name="Nitric_oxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NO</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H33N7O19P3S" hasOnlySubstanceUnits="true" id="M_malcoa_c" metaid="e598fbb1-d731-4b58-ac81-16ff15473763" name="Malonyl_CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C24H33N7O19P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe3_p" metaid="a6c68052-dae6-45cc-8564-bfa30186a4a8" name="Iron_3_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Fe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="X" hasOnlySubstanceUnits="true" id="M_dsbaox_p" metaid="_301d5e8f-ca9f-481d-8160-a26c73c5f724" name="periplasmic_protein_disulfide_isomerase_I__oxidized_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: X</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H35O7P1" hasOnlySubstanceUnits="true" id="M_1hdec9eg3p_c" metaid="f10511bc-e638-4271-9657-1a007c59f626" name="1_hexadec_9_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H35O7P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H3O3" hasOnlySubstanceUnits="true" id="M_pyr_e" metaid="_2d2e9441-87cd-4cb5-9dae-d9b322fab05c" name="Pyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39O7P1" hasOnlySubstanceUnits="true" id="M_1odec11eg3p_c" metaid="_355949af-0df1-4d5d-9200-f9726a162b09" name="1_octadec_11_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H39O7P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H3O3" hasOnlySubstanceUnits="true" id="M_pyr_c" metaid="_7a730f38-2843-43f2-a9c2-db9dbd8454a6" name="Pyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9NO8P" hasOnlySubstanceUnits="true" id="M_acg5p_c" metaid="_9587ca03-006b-4462-bba4-1653f9d3be4c" name="N_Acetyl_L_glutamyl_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H9NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO4" hasOnlySubstanceUnits="true" id="M_asp_L_c" metaid="_8ef34f64-9157-434e-9d4e-2f71a589e3a1" name="L_Aspartate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H6NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO4" hasOnlySubstanceUnits="true" id="M_asp_L_e" metaid="_97882726-764d-40b7-8ecd-54c5ae404ee5" name="L_Aspartate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H6NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H89O4P" hasOnlySubstanceUnits="true" id="M_udcpp_c" metaid="fbdecdc5-da38-4485-9402-e37a7ee8e96d" name="Undecaprenyl_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C55H89O4P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="H" hasOnlySubstanceUnits="true" id="M_h_p" metaid="dad4a909-6ffc-4ebb-a221-6e8a92044868" name="proton_H_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_L_p" metaid="_43a0d9fd-6b9b-4ece-a292-f121ca1df4ed" name="L_Alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H4NO2" hasOnlySubstanceUnits="true" id="M_nac_e" metaid="_43e8eaa8-5a8e-4ab1-9f04-6aa38022fcc0" name="Nicotinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H4NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3" hasOnlySubstanceUnits="true" id="M_glu5sa_c" metaid="_0902e050-92cb-4616-b47f-da9cba6a8230" name="L_Glutamate_5_semialdehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H4NO2" hasOnlySubstanceUnits="true" id="M_nac_c" metaid="c2dbb7ce-9fe2-454a-af2e-5fb6ab06ed23" name="Nicotinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H4NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="X" hasOnlySubstanceUnits="true" id="M_grxox_c" metaid="fc14c6e0-1cb3-43ed-bf25-0050931862ea" name="glutaredoxin__oxidized_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: X</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H72O5" hasOnlySubstanceUnits="true" id="M_12dgr181_c" metaid="_37ab8510-c554-4d80-877b-373eb15f23bf" name="1_2_Diacyl_sn_glycerol__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H72O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H4NO2" hasOnlySubstanceUnits="true" id="M_nac_p" metaid="a45e0051-33de-4c18-9c02-cb86aed92e9c" name="Nicotinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H4NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H89O4P" hasOnlySubstanceUnits="true" id="M_udcpp_p" metaid="_07c547ef-ba13-4bff-bbab-46534805b2a6" name="Undecaprenyl_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C55H89O4P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H72O5" hasOnlySubstanceUnits="true" id="M_12dgr181_p" metaid="_7df07bcf-bf48-4acf-a654-02364352ec1e" name="M_12dgr181_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H72O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H31N9O15P2" hasOnlySubstanceUnits="true" id="M_fad_c" metaid="cd16f790-67a3-4fc2-a2cd-aecf6e72c44a" name="Flavin_adenine_dinucleotide_oxidized" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H31N9O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O7P2" hasOnlySubstanceUnits="true" id="M_dmpp_c" metaid="b2544a1f-0dc7-49d5-9a1b-18fa03419b09" name="Dimethylallyl_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO7P" hasOnlySubstanceUnits="true" id="M_4pasp_c" metaid="_53e3625c-2d16-4306-9cb8-acf6724f9cd6" name="4_Phospho_L_aspartate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H6NO7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H13N6O3" hasOnlySubstanceUnits="true" id="M_dhpt_c" metaid="_0c240f4f-7f99-4dbc-ac4b-d27d264700ae" name="Dihydropteroate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H13N6O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ocmrs7eACP_c" metaid="e8804b0a-f001-40a8-b73c-7f148cd1c30e" name="3_oxo_cis_myristol_7_eoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H43N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO3R" hasOnlySubstanceUnits="true" id="M_glutrna_c" metaid="c63b44f5-a227-40a5-8110-461e7664c5e2" name="L_Glutamyl_tRNA_Glu_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8NO3R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O5" hasOnlySubstanceUnits="true" id="M_oaa_c" metaid="_54e0d9f5-b91e-48f1-b964-c6d4504b8933" name="Oxaloacetate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_L_c" metaid="a136a98d-77aa-4926-b835-cb7b7364bd5b" name="L_Alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O6" hasOnlySubstanceUnits="true" id="M_xtsn_c" metaid="_13634181-c76a-4a81-b729-e1e18323b2ec" name="Xanthosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O5" hasOnlySubstanceUnits="true" id="M_oaa_e" metaid="_39f1b8aa-d3a3-4cb2-84a8-96c9406e664e" name="M_oaa_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaala_c" metaid="_241262b3-1524-4949-b2f2-307c77e80759" name="tRNA_Ala_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O3" hasOnlySubstanceUnits="true" id="M_3hpp_p" metaid="_1cd48d3e-3831-4e76-ac5c-b6237e335ed3" name="3_Hydroxypropanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_L_e" metaid="e2883b30-80ea-47a4-a3a5-03271a3893cd" name="L_Alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_mi1p_D_c" metaid="f1cf004a-6ae1-4dfa-8855-6d68f21c58fe" name="1D_myo_Inositol_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6NO5S2" hasOnlySubstanceUnits="true" id="M_scys_L_c" metaid="_7ebc2b90-6180-45f7-bd7b-7121cc072a5e" name="S_Seleno_L_cysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H6NO5S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O5" hasOnlySubstanceUnits="true" id="M_oaa_p" metaid="_0c6ba5c2-a68f-4439-9bb4-e7b1077b2030" name="M_oaa_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N3O9P" hasOnlySubstanceUnits="true" id="M_5aizc_c" metaid="e0424e3d-345a-4d11-881b-4500f38d4b43" name="5_amino_1__5_phospho_D_ribosyl_imidazole_4_carboxylate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N3O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaval_c" metaid="_9307e0c3-9ddb-4e62-ae32-9693117c070e" name="tRNA_Val_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H7O4" hasOnlySubstanceUnits="true" id="M_dhna_c" metaid="c6a93da8-05cc-4361-bfec-283bfdd5c597" name="M_dhna_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H7O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51O8P1" hasOnlySubstanceUnits="true" id="M_pa120_p" metaid="e3fff18b-7796-462c-98e1-3d485f513e96" name="1_2_didodecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H51O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O3" hasOnlySubstanceUnits="true" id="M_3hpp_e" metaid="b0d55aa8-bf10-42c8-b8ea-123b123a6cdf" name="3_Hydroxypropanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H" hasOnlySubstanceUnits="true" id="M_h_c" metaid="_68418409-f335-431c-8996-4d0f8aa940b0" name="proton_H_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O3" hasOnlySubstanceUnits="true" id="M_3hpp_c" metaid="c5750266-8367-4dcd-b8b6-0c79a496084e" name="3_Hydroxypropanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaglu_c" metaid="d6f2c2e1-8337-449e-a46c-53bb916b88db" name="tRNA__Glu_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_gal1p_c" metaid="f6679c5a-159e-4867-a60f-268f845fd101" name="alpha_D_Galactose_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="H" hasOnlySubstanceUnits="true" id="M_h_e" metaid="f1b6cbf1-69eb-4bd8-bc37-e876e4dc85e7" name="proton_H_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H3O7" hasOnlySubstanceUnits="true" id="M_osucc_c" metaid="_4a139b8b-b190-4e29-8295-00af65fb89c0" name="M_osucc_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H3O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="XH" hasOnlySubstanceUnits="true" id="M_flxso_c" metaid="_140e86df-cba4-483b-8e4d-ea8c89da50a2" name="M_flxso_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: XH</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51O8P1" hasOnlySubstanceUnits="true" id="M_pa120_c" metaid="a35ecd9e-5d62-4720-9a48-86c83d293bd9" name="1_2_didodecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H51O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O3S2" hasOnlySubstanceUnits="true" id="M_tsul_c" metaid="d5bf1430-b236-471e-bffd-330ad08312c6" name="Thiosulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O3S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N2O2" hasOnlySubstanceUnits="true" id="M_lys_L_c" metaid="fa6e293e-3fc4-40c4-b78f-a3ceef2b3e7d" name="L_Lysine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N2O2" hasOnlySubstanceUnits="true" id="M_lys_L_e" metaid="_4ea2de50-4355-4717-98d8-2977165565eb" name="L_Lysine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="O3S2" hasOnlySubstanceUnits="true" id="M_tsul_e" metaid="b17c51b1-e8d8-4454-8a75-5cac7f4af518" name="Thiosulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O3S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="HO3P" hasOnlySubstanceUnits="true" id="M_ppt_p" metaid="f0b9118e-7dd4-4e5b-a9a9-1599f516994b" name="M_ppt_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HO3P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4O5" hasOnlySubstanceUnits="true" id="M_akg_c" metaid="ef5bb962-1082-46f1-90e2-7b6c96207e48" name="2_Oxoglutarate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O15P3" hasOnlySubstanceUnits="true" id="M_xtp_c" metaid="_4c1d2621-fb1a-4c64-96df-a2c128dc8ed0" name="XTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N4O15P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8N2O2" hasOnlySubstanceUnits="true" id="M_acybut_c" metaid="_409ab852-6cdf-4bd0-a2b1-99105412ba43" name="gamma_Amino_gamma_cyanobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NOR" hasOnlySubstanceUnits="true" id="M_protrna_c" metaid="_12a0bbef-367e-4a3f-a6ce-427bceda6fd3" name="L_Prolyl_tRNA_Pro_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NOR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="O3S2" hasOnlySubstanceUnits="true" id="M_tsul_p" metaid="_3b16619b-907b-45e5-a6da-20824985c4e5" name="Thiosulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O3S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H39N4O16" hasOnlySubstanceUnits="true" id="M_scl_c" metaid="c7883cb2-fde3-45fa-91b6-770f6b03edcb" name="sirohydrochlorin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H39N4O16</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8O5" hasOnlySubstanceUnits="true" id="M_3c4mop_c" metaid="d5d937ae-07a7-41fa-a701-79824c479f48" name="3_Carboxy_4_methyl_2_oxopentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H8O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N2O11P2" hasOnlySubstanceUnits="true" id="M_dtdp_c" metaid="eb377850-c371-43a8-9858-d993a35f49e9" name="dTDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N2O11P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N2O2" hasOnlySubstanceUnits="true" id="M_lys_L_p" metaid="_2e07cfe9-2dca-49f6-b2a4-e17cae15f282" name="L_Lysine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4O5" hasOnlySubstanceUnits="true" id="M_akg_e" metaid="_6411d276-b49e-4441-9c4c-c94102396cce" name="2_Oxoglutarate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H12N2O5P" hasOnlySubstanceUnits="true" id="M_pyam5p_c" metaid="f650fd4e-8782-49c2-bda0-c40585363fee" name="Pyridoxamine_5__phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H12N2O5P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NOR" hasOnlySubstanceUnits="true" id="M_alatrna_c" metaid="e56d57ec-8f7a-440b-a12b-6e4631b95919" name="L_Alanyl_tRNA_Ala_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NOR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4O5" hasOnlySubstanceUnits="true" id="M_akg_p" metaid="a67f052f-35bd-43c1-adb8-4e43508bf222" name="2_Oxoglutarate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H46N7O17P3S" hasOnlySubstanceUnits="true" id="M_occoa_c" metaid="_0f007fc3-d373-4035-a2a1-4ea49468e43a" name="Octanoyl_CoA__n_C8_0CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H46N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O12P2" hasOnlySubstanceUnits="true" id="M_tagdp_D_c" metaid="_894c8e6c-31b5-4de0-bf03-4652ee16400b" name="D_Tagatose_1_6_biphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H10O12P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H33N2O10PRS" hasOnlySubstanceUnits="true" id="M_pmeACP_c" metaid="db986ad5-99cc-40d9-9744-16526c914d14" name="Pimeloyl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H33N2O10PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O8P" hasOnlySubstanceUnits="true" id="M_imp_c" metaid="d69bee01-9927-4531-8711-2d454cad6a4a" name="IMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N4O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N6O5Se" hasOnlySubstanceUnits="true" id="M_seahcys_c" metaid="_4258087e-c242-4d51-9ebb-48744feb508d" name="Se_Adenosylselenohomocysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H20N6O5Se</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H82O10P1" hasOnlySubstanceUnits="true" id="M_pg180_c" metaid="_96c00e78-4cd1-43d7-8325-80821e27a87e" name="Phosphatidylglycerol__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H82O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H33N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ooctACP_c" metaid="c85f425a-ae23-4a02-b515-8ba08eda764e" name="3_Oxooctanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H33N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H29N2O11PRS" hasOnlySubstanceUnits="true" id="M_hgmeACP_c" metaid="_6e93e55a-7e7f-4345-9c06-863a26d45a85" name="3_Hydroxyglutaryl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H29N2O11PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17O7P2" hasOnlySubstanceUnits="true" id="M_grdp_c" metaid="_49fb8505-c10b-486b-82f3-5692426ba994" name="Geranyl_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H17O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H23N5O16P2" hasOnlySubstanceUnits="true" id="M_gdpmann_c" metaid="de438222-54cc-4726-952e-75035bf84528" name="GDP_D_mannose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H23N5O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H3O3" hasOnlySubstanceUnits="true" id="M_pyr_p" metaid="c4099479-3078-4c0b-8bff-7948647ffa56" name="Pyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HS2R" hasOnlySubstanceUnits="true" id="M_iscssh_c" metaid="_5ba18a87-4bba-4353-95f1-513b68844dfa" name="IscS_with_bound_sulfur" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HS2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12O13P2" hasOnlySubstanceUnits="true" id="M_s17bp_c" metaid="dba98b8f-c61e-49d1-a284-4714f266848d" name="M_s17bp_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H12O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H82O10P1" hasOnlySubstanceUnits="true" id="M_pg180_p" metaid="_6bd73a39-fbae-4d25-bdc5-5fd6441fda1d" name="Phosphatidylglycerol__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H82O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47N2O8PRS" hasOnlySubstanceUnits="true" id="M_myrsACP_c" metaid="df44ad25-ac95-45d0-9647-879f707a7471" name="Myristoyl_ACP__n_C14_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H47N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H56N8O27P2" hasOnlySubstanceUnits="true" id="M_um4p_c" metaid="a0d3e7b3-1f92-41ea-8f6c-ba87600e87fb" name="UDP_N_acetylmuramoyl_L_alanyl_D_gamma_glutamyl_meso_2_6_diaminopimelate_D_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H56N8O27P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14NO9P" hasOnlySubstanceUnits="true" id="M_acgam6p_c" metaid="dc2c18e5-6558-4019-ad49-1e3b80ebef8c" name="N_Acetyl_D_glucosamine_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H14NO9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="XH2" hasOnlySubstanceUnits="true" id="M_dsbgrd_p" metaid="eff717fd-49e3-488e-8606-499039426a48" name="M_dsbgrd_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: XH2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_leu_L_p" metaid="_815c4d68-bc29-42b2-aee9-6e71f5fd471e" name="L_Leucine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="AsO4" hasOnlySubstanceUnits="true" id="M_aso4_c" metaid="e0a1b8f9-6211-4b7a-b8bb-01cd95f33365" name="Arsenate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: AsO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="X" hasOnlySubstanceUnits="true" id="M_dsbcox_p" metaid="_20ca6384-7107-4748-920a-e081ce8740bf" name="protein_disulfide_isomerase_II__oxidized_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: X</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_D_c" metaid="_1d0c9062-4b33-4ade-836b-0f41149578d2" name="M_cys_D_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C81H148O17P2" hasOnlySubstanceUnits="true" id="M_clpn181_p" metaid="_1c51d3b9-7219-4a23-a8cd-4d419ce90c58" name="cardiolipin__tetraoctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C81H148O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_D_e" metaid="b01d433a-64f0-4020-a983-b8e0634c2f39" name="M_cys_D_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5NO4S" hasOnlySubstanceUnits="true" id="M_3sala_c" metaid="_63991681-2ab2-40a1-8153-0d0cfba427e9" name="M_3sala_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5NO4S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_leu_L_e" metaid="_567f5eb0-dc47-4e7a-853f-e3754d6e0810" name="L_Leucine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H18N2O16P2" hasOnlySubstanceUnits="true" id="M_udpLa4o_c" metaid="_73df25c6-e744-404d-a867-5f34259d0693" name="M_udpLa4o_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H18N2O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H64O5" hasOnlySubstanceUnits="true" id="M_12dgr161_p" metaid="_82d8a338-3515-4257-84e3-2e9c6b224bb1" name="M_12dgr161_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H64O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_leu_L_c" metaid="b0ac6125-caf8-4276-8069-6f5d009bead4" name="L_Leucine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5N" hasOnlySubstanceUnits="true" id="M_bzonit_c" metaid="_75292c17-90aa-4b78-9352-2043ad74c04d" name="Benzonitrile" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5N</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N3O4P" hasOnlySubstanceUnits="true" id="M_4ampm_c" metaid="_26c01e93-50ec-4b08-a1e1-191ffe0bc728" name="4_Amino_2_methyl_5_phosphomethylpyrimidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H8N3O4P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H29N2O12" hasOnlySubstanceUnits="true" id="M_anhgm_c" metaid="_77e3b37d-7cba-4b89-94ee-8fd98c3abce5" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramic_acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H29N2O12</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H126N2O37P2" hasOnlySubstanceUnits="true" id="M_kdo2lipid4_XF_c" metaid="_60e9bc22-f9f6-4f58-8f58-98f644ba003f" name="M_kdo2lipid4_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C72H126N2O37P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H114N14O40" hasOnlySubstanceUnits="true" id="M_murein5p3p_p" metaid="d096ffe1-da0f-4e1d-bd61-620f8fd34348" name="two_linked_disacharide_pentapeptide_and_tripeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C74H114N14O40</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O11P2" hasOnlySubstanceUnits="true" id="M_idp_c" metaid="_621697eb-74bf-4ad1-885c-c3c9cebb13c7" name="IDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N4O11P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6NO2" hasOnlySubstanceUnits="true" id="M_1pyr5c_c" metaid="_5a7d2518-c748-4b90-b2ee-4e14720b3e61" name="1_Pyrroline_5_carboxylate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H6NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H126N2O37P2" hasOnlySubstanceUnits="true" id="M_kdo2lipid4_XF_e" metaid="f14e0454-e072-40c1-879e-1965b3ff0fc7" name="M_kdo2lipid4_XF_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C72H126N2O37P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H13NO9P" hasOnlySubstanceUnits="true" id="M_pran_c" metaid="_51841d19-27f5-4c5a-b36c-f035d475c09d" name="N__5_Phospho_D_ribosyl_anthranilate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H13NO9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_xu5p_D_c" metaid="_907b93b7-6be0-44dd-9165-b1bc108b8e60" name="D_Xylulose_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H22N2O10PRS" hasOnlySubstanceUnits="true" id="M_malACP_c" metaid="e3f679de-fe9b-4b89-93ca-4d57782a66e6" name="Malonyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H22N2O10PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H3O3" hasOnlySubstanceUnits="true" id="M_msa_c" metaid="_0d762fd3-71c4-4529-b200-7bc4f8b1f35b" name="Malonate_semialdehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O6P" hasOnlySubstanceUnits="true" id="M_dhap_c" metaid="df0429d8-48ee-4ebd-8476-05f607e62cfb" name="Dihydroxyacetone_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O7" hasOnlySubstanceUnits="true" id="M_cit_c" metaid="_83a1b111-befa-49a2-84c4-ab6eb3cb52af" name="Citrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H5O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H29N2O12" hasOnlySubstanceUnits="true" id="M_anhgm_p" metaid="e768bf82-dfbd-493b-b2b8-fd48dd4b3921" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramic_acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H29N2O12</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N10O19P4" hasOnlySubstanceUnits="true" id="M_ap4a_c" metaid="_51621837-3db4-461c-ba68-daa702e55f16" name="P1_P4_Bis_5__adenosyl__tetraphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H24N10O19P4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5N2O2" hasOnlySubstanceUnits="true" id="M_urcan_c" metaid="_5c743639-01c9-4034-88a4-fd1a3a711f30" name="Urocanate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H5N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O7" hasOnlySubstanceUnits="true" id="M_cit_e" metaid="_1e3735ba-e736-42df-8d6f-8a9542a04881" name="Citrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H5O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H126N2O37P2" hasOnlySubstanceUnits="true" id="M_kdo2lipid4_XF_p" metaid="_865f8957-d223-4884-b75c-07b819961598" name="M_kdo2lipid4_XF_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C72H126N2O37P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H38N4O4" hasOnlySubstanceUnits="true" id="M_pppg9_c" metaid="a39d6345-6a0d-4358-9088-cf1204117095" name="Protoporphyrinogen_IX" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H38N4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H122O61" hasOnlySubstanceUnits="true" id="M_14aglucan_e" metaid="_43ccbf86-2d88-499a-9f01-2dd79b4d4a79" name="M_14aglucan_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C72H122O61</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H122O61" hasOnlySubstanceUnits="true" id="M_14aglucan_c" metaid="_5749ed56-6e05-4901-9b4b-b5dfee5733c8" name="1_4_alpha_D_Glucosyl_n" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C72H122O61</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NOR" hasOnlySubstanceUnits="true" id="M_glytrna_c" metaid="_4a83b6ff-cd79-43e3-8aa4-8e0d9bfde226" name="Glycyl_tRNA_Gly_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H5NOR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49N2O8PRS" hasOnlySubstanceUnits="true" id="M_hdeACP_c" metaid="da832ba9-9348-4a4b-9fcf-8128e12a24f7" name="cis_hexadec_9_enoyl__acyl_carrier_protein___n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H49N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O9P2" hasOnlySubstanceUnits="true" id="M_dadp_c" metaid="_0ea2039b-4061-4345-8af5-ada4eac793ec" name="dADP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O9P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H122O61" hasOnlySubstanceUnits="true" id="M_14aglucan_p" metaid="_906cd203-bd17-4164-9158-fbbed1e862ac" name="M_14aglucan_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C72H122O61</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O7" hasOnlySubstanceUnits="true" id="M_cit_p" metaid="d14e510b-4acd-44f7-88e3-d883529a9812" name="Citrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H5O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O2" hasOnlySubstanceUnits="true" id="M_hxa_c" metaid="efbea65b-9d47-4614-8b70-9ca95f446dc9" name="Hexanoate__n_C6_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnatyr_c" metaid="_1bd65fd4-64bf-4feb-a711-1460105a0c36" name="tRNA_Tyr_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="CH3O3S" hasOnlySubstanceUnits="true" id="M_mso3_e" metaid="fa3f8603-57c4-4e14-a648-8cd4efaddbc4" name="methanesulfonate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH3O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CH3O3S" hasOnlySubstanceUnits="true" id="M_mso3_c" metaid="ee1ab707-2158-424d-9184-aae220a5e737" name="methanesulfonate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH3O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4N2O2" hasOnlySubstanceUnits="true" id="M_ura_c" metaid="c46235c5-0aa5-444e-83e7-94c55e9f4e91" name="Uracil" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O14P" hasOnlySubstanceUnits="true" id="M_chtbs6p_c" metaid="_9bdd4880-3d07-4a9a-a72b-5cef7fac4128" name="M_chtbs6p_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H27N2O14P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H25N3O17P2" hasOnlySubstanceUnits="true" id="M_uacgam_c" metaid="b30f5402-fc0a-4542-81ec-6eb62f3d22d1" name="UDP_N_acetyl_D_glucosamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H25N3O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4N2O2" hasOnlySubstanceUnits="true" id="M_ura_e" metaid="ccfc70ef-41a5-42a6-81c1-b46663f039d8" name="M_ura_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H25N3O16P2" hasOnlySubstanceUnits="true" id="M_udpacfuc_c" metaid="d3296540-f850-4c00-8d52-8a6584778037" name="M_udpacfuc_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H25N3O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O2" hasOnlySubstanceUnits="true" id="M_hxa_p" metaid="aabefeb0-b032-4613-90e2-50e217087b0b" name="Hexanoate__n_C6_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="CH3O3S" hasOnlySubstanceUnits="true" id="M_mso3_p" metaid="a6f41b1d-5495-4a4a-81c6-a2f8f207215c" name="methanesulfonate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH3O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4N2O2" hasOnlySubstanceUnits="true" id="M_ura_p" metaid="_8bdfb689-18da-4a6b-8278-2a2c65065ca6" name="M_ura_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H59O8P1" hasOnlySubstanceUnits="true" id="M_pa140_c" metaid="_5a4391db-b9ee-403d-bbbf-69573a3f3e23" name="1_2_ditetradecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H59O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N5O10P2" hasOnlySubstanceUnits="true" id="M_pap_c" metaid="_6eda61d5-8a33-4a54-b717-9f489f619aca" name="Adenosine_3__5__bisphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N5O10P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnapro_c" metaid="_6922d10c-bdf3-4ac4-9008-42f8753800e1" name="tRNA_Pro_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_D_p" metaid="_4824fa5f-73d8-45e7-b781-7d9390953608" name="M_cys_D_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H14N2" hasOnlySubstanceUnits="true" id="M_ptrc_c" metaid="c453ad0a-9c46-44c6-99fc-d1a00c8a4979" name="Putrescine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H14N2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H14N2" hasOnlySubstanceUnits="true" id="M_ptrc_e" metaid="_9a6a8e7b-11d7-443a-a435-e3864359232b" name="Putrescine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H14N2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H16N4O4PS" hasOnlySubstanceUnits="true" id="M_thmmp_c" metaid="_13decc39-a41f-4a2e-a73a-36731e84d6d0" name="Thiamin_monophosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H16N4O4PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ocpalm9eACP_c" metaid="_0884f9ed-92ea-4902-b209-cc1a46219385" name="3_oxo_cis_palm_9_eoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H47N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_g6p_c" metaid="c4353cf2-27e9-4c56-b9ac-e5ee8c23e8dc" name="D_Glucose_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H59O8P1" hasOnlySubstanceUnits="true" id="M_pa140_p" metaid="_5d254239-e98b-4a67-bddc-19ff12646b0f" name="1_2_ditetradecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H59O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hmrsACP_c" metaid="_70619344-3e7b-4386-bb9f-0daba264f997" name="R__3_Hydroxytetradecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H47N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H14N2" hasOnlySubstanceUnits="true" id="M_ptrc_p" metaid="_86f3a98d-4598-4a29-85f5-f393f0e6e519" name="Putrescine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H14N2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H21N5O15P2" hasOnlySubstanceUnits="true" id="M_gdp4d6dm_c" metaid="a954935d-5ef2-4be6-9881-cd849b42fd81" name="M_gdp4d6dm_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H21N5O15P2</p> + </body> + </notes> + </species> + </listOfSpecies> + <listOfParameters> + <parameter constant="true" id="UPPER_BOUND_99999_0" units="mmol_per_gDW_per_hr" value="99999"/> + <parameter constant="true" id="LOWER_BOUND_0_0" units="mmol_per_gDW_per_hr" value="0"/> + <parameter constant="true" id="LOWER_BOUND_99999_0" units="mmol_per_gDW_per_hr" value="-99999"/> + </listOfParameters> + <listOfReactions> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUPRT" metaid="_14369fd2-8f83-4ef5-a5bc-80f277a1cbbf" name="glutamine_phosphoribosyldiphosphate_amidotransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000770</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 2.4.2.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_14369fd2-8f83-4ef5-a5bc-80f277a1cbbf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000770"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pram_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG180abcpp" metaid="_309b13d3-cbb6-4182-ac1d-46340890b347" name="phosphatidylglycerol_transport_via_ABC_system__n_C18_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_309b13d3-cbb6-4182-ac1d-46340890b347"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg180_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HYXNtex" metaid="fc02e5bf-c6fd-48eb-8077-c7b72c8d14ea" name="Hypoxanthine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fc02e5bf-c6fd-48eb-8077-c7b72c8d14ea"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hxan_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hxan_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LEUtex" metaid="_4335a7b1-bbd5-44dd-9c9a-ebcc1fa9676b" name="L_leucine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4335a7b1-bbd5-44dd-9c9a-ebcc1fa9676b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_leu_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_leu_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METTRS" metaid="ad24d68c-cf9b-45ab-abd3-56446f8d42ed" name="Methionyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006950</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ad24d68c-cf9b-45ab-abd3-56446f8d42ed"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnamet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mettrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_glu_L_e" metaid="_80df0d73-fb34-4b1b-b43b-cb5a2bc7c012" name="R_EX_glu_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_80df0d73-fb34-4b1b-b43b-cb5a2bc7c012"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUCYS" metaid="_82876c4f-119d-442e-8003-fd0b8b8c557f" name="gamma_glutamylcysteine_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003340</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_82876c4f-119d-442e-8003-fd0b8b8c557f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glucys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRAMPC" metaid="e5b61c92-a688-4271-af80-91f6cc7df401" name="phosphoribosyl_AMP_cyclohydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020260</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 3.5.4.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e5b61c92-a688-4271-af80-91f6cc7df401"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020260"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_prbamp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_prfp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_VALtex" metaid="_0813fcbe-e60c-4afd-ab14-2197c512b3a7" name="L_valine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0813fcbe-e60c-4afd-ab14-2197c512b3a7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_val_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_val_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE141abcpp" metaid="d06025bc-2fe5-4f60-9f7f-554494955a65" name="phosphatidylethanolamine_transport_via_ABC_system__n_C14_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d06025bc-2fe5-4f60-9f7f-554494955a65"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pe141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe141_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_MEOH" metaid="_103d41e9-a0d8-48d4-998c-2885cb732810" name="R_DM_MEOH" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_103d41e9-a0d8-48d4-998c-2885cb732810"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_meoh_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CU2tex" metaid="c67872a0-b10c-4820-85dc-1079bd7171f9" name="copper__Cu_2__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c67872a0-b10c-4820-85dc-1079bd7171f9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cu2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cu2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYC3Ptex" metaid="_24207fcd-c1e8-4a47-9993-82ceb08ce6a3" name="sn_Glycerol_3_phosphate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_24207fcd-c1e8-4a47-9993-82ceb08ce6a3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc3p_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc3p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SELGTHR" metaid="e1e2fe01-c3b9-4fa2-9d8c-63d260a5f5df" name="R_SELGTHR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e1e2fe01-c3b9-4fa2-9d8c-63d260a5f5df"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="4"/> + <speciesReference constant="true" species="M_slnt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gthox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_dgslnt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DXPS" metaid="_92a20d90-2d2e-469d-80f1-b4ef7ed6ae3a" name="1_deoxy_D_xylulose_5_phosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020600</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.2.1.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_92a20d90-2d2e-469d-80f1-b4ef7ed6ae3a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.2.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020600"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DMPO_LACCASE" metaid="f394e9de-d142-4627-8a3e-83ae22843555" name="Dimethoxyphenol_oxidase_laccase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013090</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.10.3.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f394e9de-d142-4627-8a3e-83ae22843555"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.10.3.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013090"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dmoxpol_c" stoichiometry="4"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_tmoxdpq_c" stoichiometry="4"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLTGY2pp" metaid="c93308b1-aad3-402b-a862-11afbb3fc3fd" name="murein_lytic_transglycosylase__murein4p3p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_003940 ) OR ( XFCFBP8418_019770 )</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c93308b1-aad3-402b-a862-11afbb3fc3fd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019770"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein4p3p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhgm3p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD160" metaid="_5ca3fed7-9650-46a3-b5f9-3d2379ccfba2" name="Phosphatidylserine_decarboxylase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 4.1.1.65</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ca3fed7-9650-46a3-b5f9-3d2379ccfba2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ps160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD60" metaid="_2f4d3818-add9-4c52-bc66-934853d16392" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C6_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2f4d3818-add9-4c52-bc66-934853d16392"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hhexACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thex2eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_QULNS" metaid="_89adc41d-91eb-4b1f-9627-6c8c241e29f7" name="quinolinate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000540</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.72</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_89adc41d-91eb-4b1f-9627-6c8c241e29f7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.72"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iasp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_quln_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NADH16pp" metaid="_981fc70e-7cb2-49e3-a7b4-5f8349994de4" name="NADH_dehydrogenase__ubiquinone_8___3_protons___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025600 AND XFCFBP8418_025610 AND XFCFBP8418_025620 AND XFCFBP8418_025630 AND XFCFBP8418_025640 AND XFCFBP8418_025650 AND XFCFBP8418_025660 AND XFCFBP8418_025670 AND XFCFBP8418_025680 AND XFCFBP8418_025690 AND XFCFBP8418_025700 AND XFCFBP8418_025720 AND XFCFBP8418_025730</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 1.6.5.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_981fc70e-7cb2-49e3-a7b4-5f8349994de4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.6.5.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025700"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025600"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025650"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025660"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025610"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025620"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025730"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025640"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="4"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="3"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BHEXAMD" metaid="_1b6f2247-9e71-47cc-b8ad-f4b0ece10040" name="Beta_hexosaminidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_001510 ) OR ( XFCFBP8418_021350 )</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.2.1.52</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1b6f2247-9e71-47cc-b8ad-f4b0ece10040"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.52"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021350"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chtbs_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acgam_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MCITL2" metaid="_9ea3f7d5-e2ae-4c22-bad9-07e33c547b13" name="methylisocitrate_lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022790</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 4.1.3.30</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9ea3f7d5-e2ae-4c22-bad9-07e33c547b13"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.3.30"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022790"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_micit_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PEtex" metaid="_2a13a352-80f4-40cc-8e34-d8de3874af53" name="glycero_3_phosphoethanolamine_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2a13a352-80f4-40cc-8e34-d8de3874af53"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g3pe_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3pe_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPK" metaid="_0f92d4f9-8ea4-4a3d-a6b8-2dbc86ec5f98" name="aspartate_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020380</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 2.7.2.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0f92d4f9-8ea4-4a3d-a6b8-2dbc86ec5f98"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.2.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020380"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4pasp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD161" metaid="c09709b6-e435-448f-8a39-24621fed6636" name="Phosphatidylserine_decarboxylase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 4.1.1.65</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c09709b6-e435-448f-8a39-24621fed6636"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ps161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AKGt2rtex" metaid="adebd6ac-199d-4bb3-806c-78c44400a694" name="R_AKGt2rtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#adebd6ac-199d-4bb3-806c-78c44400a694"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_akg_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_akg_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDEP4pp" metaid="_432105e1-fc64-4ad2-accf-a32b00339618" name="murein_D_D_endopeptidase__murein4px4px4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_432105e1-fc64-4ad2-accf-a32b00339618"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_murein4px4px4p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4px4p4p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G1PTT" metaid="_82e3a877-0072-405f-96d7-b5b8aee32c62" name="glucose_1_phosphate_thymidylyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026240</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.24</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_82e3a877-0072-405f-96d7-b5b8aee32c62"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.24"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dttp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dtdpglu_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP120abcpp" metaid="_95955cb8-0c3d-4efc-b5d3-d271056c82c2" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C12_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_95955cb8-0c3d-4efc-b5d3-d271056c82c2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp120_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp120_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPS" metaid="bf5b3eb0-b23b-46c6-93dd-4e37adc2cbb2" name="phosphoenolpyruvate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022440</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 2.7.9.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bf5b3eb0-b23b-46c6-93dd-4e37adc2cbb2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.9.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022440"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_2MAHMP" metaid="_0d3bc6e1-faff-4cdc-98ef-b3db11a2d1fe" name="2_Methyl_4_amino_5_hydroxymethylpyrimidine_diphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003250</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0d3bc6e1-faff-4cdc-98ef-b3db11a2d1fe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2mahmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4ampm_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SULtex" metaid="d9cb977b-1ed7-46f2-880c-4b9e492145be" name="R_SULtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d9cb977b-1ed7-46f2-880c-4b9e492145be"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_so4_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_so4_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPM" metaid="_3d261807-574e-441f-8141-b58af7afcbd4" name="R_PPM" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026200</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 5.4.2.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d261807-574e-441f-8141-b58af7afcbd4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.2.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026200"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_r1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ORNtpp" metaid="_97b03bc1-d9f6-42f5-9213-cbc5a80501c9" name="R_ORNtpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007710</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_97b03bc1-d9f6-42f5-9213-cbc5a80501c9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_orn_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_orn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLCptspp" metaid="a5036fe0-e602-4b03-8a02-61ed7ee43202" name="R_GLCptspp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a5036fe0-e602-4b03-8a02-61ed7ee43202"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glc_D_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_URA_e" metaid="fd91adc6-3242-4c4f-873b-895cc743cf86" name="R_EX_URA_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fd91adc6-3242-4c4f-873b-895cc743cf86"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_ura_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_USHDXF" metaid="e9865075-87c4-4211-acd9-1e784b54ed83" name="R_USHDXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012350</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.1.2.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e9865075-87c4-4211-acd9-1e784b54ed83"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012350"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_u23ga_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_lipidX_XF_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASR" metaid="_6bb0e45a-0673-4f17-8b22-2d9261e8b641" name="R_ASR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_015110</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6bb0e45a-0673-4f17-8b22-2d9261e8b641"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015110"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_aso4_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gthox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_aso3_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPBNGS" metaid="_202ef9f6-693d-4498-add8-ed21231eea8b" name="porphobilinogen_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019180</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.24</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_202ef9f6-693d-4498-add8-ed21231eea8b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.24"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5aop_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppbng_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM3PApp" metaid="_25b1fdbc-6f3b-48a0-8511-cb128926cb1d" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tripeptide_amidase__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011590</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: 3.5.1.28</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_25b1fdbc-6f3b-48a0-8511-cb128926cb1d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.28"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhgm3p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdap_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYC3Pabc" metaid="_28e0eb51-089b-40cc-b17e-e2a1f37062ae" name="R_GLYC3Pabc" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_28e0eb51-089b-40cc-b17e-e2a1f37062ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACOAR" metaid="a31cc524-015e-4a3a-81b5-41ae0b05130c" name="acetoacetyl_CoA_reductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025580</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.1.1.36</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a31cc524-015e-4a3a-81b5-41ae0b05130c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.36"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025580"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_aacoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_r3hbcoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAAD" metaid="_49d1cf96-0b01-4869-91d6-edc4d3d3de31" name="D_Amino_acid_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010710</p> + <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> + <p>EC_NUMBER: 1.4.99.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49d1cf96-0b01-4869-91d6-edc4d3d3de31"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.4.99.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARD" metaid="d312bee4-2cbd-42d8-9bae-17ee32fee20c" name="R_ARD" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020240</p> + <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> + <p>EC_NUMBER: 1.13.11.53</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d312bee4-2cbd-42d8-9bae-17ee32fee20c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.13.11.53"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhmtp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_mtpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA180abcpp" metaid="_5091b6e2-ef92-4479-8b11-9e1d4b778674" name="phosphatidate_transport_via_ABC_system__n_C18_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5091b6e2-ef92-4479-8b11-9e1d4b778674"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa180_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD80" metaid="_77926968-2528-4de7-9b9f-0f7c44626c73" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C8_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_77926968-2528-4de7-9b9f-0f7c44626c73"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hoctACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_toct2eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP120pp" metaid="_6a689f43-ecf3-4264-b0e7-b714b4d7c095" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6a689f43-ecf3-4264-b0e7-b714b4d7c095"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp120_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg120_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYCtpp" metaid="f2bf7fbc-77d4-4531-aea8-6f578ae146df" name="glycerol_transport_via_channel__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020710</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f2bf7fbc-77d4-4531-aea8-6f578ae146df"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLNTRS" metaid="_49002df7-93bb-449e-b598-c830b9a5a437" name="Glutaminyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004140</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49002df7-93bb-449e-b598-c830b9a5a437"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004140"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnagln_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glntrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDP4KPS" metaid="a8dc7f00-c76a-4ac1-bc13-be9336ed82eb" name="UDP_4_keto_pentose_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020820</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.1.1.35</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a8dc7f00-c76a-4ac1-bc13-be9336ed82eb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.35"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpglcur_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp4kp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASNN" metaid="_4fbdee0a-5742-4787-a3e1-55709a4b4a7a" name="L_asparaginase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024050</p> + <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> + <p>EC_NUMBER: 3.5.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4fbdee0a-5742-4787-a3e1-55709a4b4a7a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_asn_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR40" metaid="_117d8d3d-f0b7-4778-91dd-c9a830f0490b" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C4_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_117d8d3d-f0b7-4778-91dd-c9a830f0490b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_actACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3haACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACOCMT" metaid="_66369825-8159-41b0-aef5-5421b139c375" name="R_ACOCMT" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025290</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: 2.1.3.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_66369825-8159-41b0-aef5-5421b139c375"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.3.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025290"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acorn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cbp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_accitr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOAT2XF" metaid="f302aa33-53e3-478f-adb3-5467cf4fb26a" name="R_MOAT2XF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015030</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.4.99.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f302aa33-53e3-478f-adb3-5467cf4fb26a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.99.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ckdo_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdolipid4_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo2lipid4_XF_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPA" metaid="_5a29b271-98c0-4cfd-910c-c667f06ba935" name="inorganic_diphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_010630 ) OR ( XFCFBP8418_012360 ) OR ( XFCFBP8418_019680 )</p> + <p>SUBSYSTEM: Anaplerotic_Reactions</p> + <p>EC_NUMBER: 3.6.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5a29b271-98c0-4cfd-910c-c667f06ba935"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012360"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD140" metaid="_01dad332-1a3c-4153-8df5-b37ea27b2473" name="Phosphatidylserine_decarboxylase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 4.1.1.65</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01dad332-1a3c-4153-8df5-b37ea27b2473"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ps140_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TRPS3r" metaid="_60f46c0e-3148-4c43-8d24-e134cba85758" name="R_TRPS3r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003820 AND XFCFBP8418_003830</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_60f46c0e-3148-4c43-8d24-e134cba85758"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003830"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003820"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3ig3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_indole_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IPPS" metaid="_08649866-a11a-42f5-9c63-bc67e65b4fce" name="2_isopropylmalate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017930</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 2.3.3.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_08649866-a11a-42f5-9c63-bc67e65b4fce"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.3.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3mob_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3c3hmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLNS" metaid="bccbebed-11f0-42cd-a1d9-24cdac9ca01d" name="glutamine_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017710</p> + <p>SUBSYSTEM: Glutamate_Metabolism_</p> + <p>EC_NUMBER: 6.3.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bccbebed-11f0-42cd-a1d9-24cdac9ca01d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHTNA2" metaid="a33b4b51-cc6e-451d-8e71-4a5283381588" name="R_CHTNA2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010730</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.2.1.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a33b4b51-cc6e-451d-8e71-4a5283381588"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010730"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chitin_polymer_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_e" stoichiometry="49"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_chtbs_e" stoichiometry="50"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD141" metaid="_4e296aea-508c-400f-8105-5b544b9797ba" name="Phosphatidylserine_decarboxylase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 4.1.1.65</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4e296aea-508c-400f-8105-5b544b9797ba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ps141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LYSabcpp" metaid="_051d2f7e-278f-4b19-81f8-746cc4f031ae" name="L_lysine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.21</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_051d2f7e-278f-4b19-81f8-746cc4f031ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.21"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lys_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_DAD_5" metaid="_49f56dfb-077f-4510-8638-b0fce0a1f7e3" name="R_DM_DAD_5" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49f56dfb-077f-4510-8638-b0fce0a1f7e3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dad_5_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_FOR" metaid="_2c90897c-1dc2-4313-847b-b063fec53fee" name="R_DM_FOR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2c90897c-1dc2-4313-847b-b063fec53fee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_for_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KARA1" metaid="b0cfc4f4-6093-446d-9500-4a3e2fc3316b" name="ketol_acid_reductoisomerase__2_3_dihydroxy_3_methylbutanoate_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017890</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.86</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b0cfc4f4-6093-446d-9500-4a3e2fc3316b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.86"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_23dhmb_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_alac_S_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_4PCPpp" metaid="_7c20c035-8866-4746-b496-301120428604" name="R_4PCPpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: 3.4.17.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7c20c035-8866-4746-b496-301120428604"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdapDala_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_LalaDgluMdap_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NAabcO" metaid="_90b16213-e7d2-411d-b1ed-0013b8613160" name="R_NAabcO" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021120 AND XFCFBP8418_021130</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_90b16213-e7d2-411d-b1ed-0013b8613160"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021130"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_na1_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_na1_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_2KMBT" metaid="f1a1c730-db43-4466-a772-458b812137cd" name="R_2KMBT" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005040</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f1a1c730-db43-4466-a772-458b812137cd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005040"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2kmb_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2ogm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPTA" metaid="e95b15cd-248a-4abb-a36f-35144913809a" name="aspartate_aminotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014480</p> + <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> + <p>EC_NUMBER: 2.6.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e95b15cd-248a-4abb-a36f-35144913809a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PAPSR" metaid="_94d10b09-024a-445a-8d66-a125d9fb50c2" name="R_PAPSR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_002720 ) OR ( XFCFBP8418_002720 AND XFCFBP8418_013260 )</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 1.8.4.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_94d10b09-024a-445a-8d66-a125d9fb50c2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.4.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002720"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_paps_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pap_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_so3_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MI1PP" metaid="_0d316631-0afb-4f33-b35e-c64235d6181e" name="myo_inositol_1_phosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005240</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.3.25</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0d316631-0afb-4f33-b35e-c64235d6181e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mi1p_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_inost_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRtex" metaid="_539d49b0-6c42-4f0d-a4db-99cd9e9170ec" name="L_threonine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_539d49b0-6c42-4f0d-a4db-99cd9e9170ec"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thr_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_thr_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTPDPK" metaid="ad8b408e-94ae-44ef-9198-2abaf8be91de" name="GTP_diphosphokinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004340</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.6.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ad8b408e-94ae-44ef-9198-2abaf8be91de"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.6.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdptp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IPDPS" metaid="ec6cff5d-8296-47ac-8a91-e527cab00288" name="1_hydroxy_2_methyl_2__E__butenyl_4_diphosphate_reductase__ipdp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004660</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.17.7.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ec6cff5d-8296-47ac-8a91-e527cab00288"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.7.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004660"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2mb4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ipdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THZPSN3" metaid="_79d778ee-f268-475b-904d-75de8270c000" name="R_THZPSN3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011380</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.8.1.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_79d778ee-f268-475b-904d-75de8270c000"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.8.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011380"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhgly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iscssh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_iscs_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4mpetz_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGDC" metaid="fa70a149-fa80-4865-a57a-8ec9bf0cab35" name="arginine_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015380</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 4.1.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fa70a149-fa80-4865-a57a-8ec9bf0cab35"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015380"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_agm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CPH4S" metaid="a3fa9d7a-5460-4c20-ad12-9d3ba1c2f250" name="6_carboxy_5_6_7_8_tetrahydropterin_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015860</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.2.50</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a3fa9d7a-5460-4c20-ad12-9d3ba1c2f250"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.50"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015860"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ahdt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acald_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cph4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FGLU" metaid="_81c035f4-7607-4bb9-b2c0-a35fed0105e0" name="formimidoylglutamase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 3.5.3.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_81c035f4-7607-4bb9-b2c0-a35fed0105e0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.3.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_forglu_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_frmd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYTRS" metaid="_7606a995-7800-4ec6-abe8-9acad743b6ef" name="Glycyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000870 AND XFCFBP8418_000880</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7606a995-7800-4ec6-abe8-9acad743b6ef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000880"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000870"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnagly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glytrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FEENTERtonex" metaid="_12a36d85-5cbd-4a3e-b15f-500bd8fa2600" name="R_FEENTERtonex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_014300 ) OR ( No_Assignment AND XFCFBP8418_014310 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_12a36d85-5cbd-4a3e-b15f-500bd8fa2600"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014300"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014310"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_feenter_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_feenter_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MALS" metaid="_91b2e54f-265a-45e4-a8de-d215e3c74426" name="malate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Anaplerotic_Reactions</p> + <p>EC_NUMBER: 2.3.3.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_91b2e54f-265a-45e4-a8de-d215e3c74426"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.3.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glx_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mal_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_14GLUCANabcpp" metaid="c89c8704-8b34-431c-a0b6-f45ed6f5893b" name="R_14GLUCANabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND No_Assignment2 AND XFCFBP8418_004950 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c89c8704-8b34-431c-a0b6-f45ed6f5893b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment2"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004950"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_14aglucan_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_14aglucan_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FRUtex" metaid="d305996b-e7c1-40e5-bfa7-0ae4b7bf8e4a" name="D_fructose_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d305996b-e7c1-40e5-bfa7-0ae4b7bf8e4a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fru_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fru_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BTS5" metaid="d6e0e695-c2ba-4aa1-b31c-6a06dfa60da2" name="Biotin_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014650</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.8.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d6e0e695-c2ba-4aa1-b31c-6a06dfa60da2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.8.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dtbt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2fe2s_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dad_5_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_btn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2fe1s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDCPDPpp" metaid="edf59a77-9d26-46f1-ab8e-1da894ac3f51" name="undecaprenyl_diphosphatase__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017720</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.6.1.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#edf59a77-9d26-46f1-ab8e-1da894ac3f51"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017720"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udcpdp_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_udcpp_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MTRI" metaid="_6fb97570-f876-42d0-87aa-3dd19fb12fc0" name="R_MTRI" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012050</p> + <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> + <p>EC_NUMBER: 5.3.1.23</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6fb97570-f876-42d0-87aa-3dd19fb12fc0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5mdr1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5mdru1p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Niabcpp" metaid="_6d7bcd38-06ed-4a02-83d8-9a04a3cdf12b" name="R_Niabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: 3.6.3.24</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6d7bcd38-06ed-4a02-83d8-9a04a3cdf12b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.24"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ni2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ni2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDEP1pp" metaid="_2ee3178f-cd5c-46ed-957e-64b4d013309c" name="murein_L_D_endopeptidase__murein3px3p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2ee3178f-cd5c-46ed-957e-64b4d013309c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein3px3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein3p3p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THDPS" metaid="_4c9752db-6ac6-41d6-ac69-c036ee50633f" name="tetrahydrodipicolinate_succinylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015100</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 2.3.1.117</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4c9752db-6ac6-41d6-ac69-c036ee50633f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.117"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_succoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_sl2a6o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR60" metaid="_161e1c42-26df-4803-9482-c44d8809627b" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C6_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_161e1c42-26df-4803-9482-c44d8809627b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ohexACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hhexACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KARA2" metaid="_7137640b-08fb-4d48-a493-848e538f96e4" name="ketol_acid_reductoisomerase__2_Acetolactate_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017890</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.86</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7137640b-08fb-4d48-a493-848e538f96e4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.86"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2ahbut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_23dhmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL60t2pp" metaid="_8114a03e-0693-4d24-b01b-0073a5bdf075" name="fatty_acid_CoA_ligase__hexanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8114a03e-0693-4d24-b01b-0073a5bdf075"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hxa_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hxcoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_14GLUCANtex" metaid="_6fad67d1-09ba-4d18-95e0-5bf1cc1498b7" name="R_14GLUCANtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6fad67d1-09ba-4d18-95e0-5bf1cc1498b7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_14aglucan_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_14aglucan_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD120" metaid="_76125732-dfb4-4bed-a454-8c2ed827159b" name="Phosphatidylserine_decarboxylase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 4.1.1.65</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_76125732-dfb4-4bed-a454-8c2ed827159b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ps120_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe120_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CD2t3pp" metaid="_6a6be6f5-942a-4c62-acf5-19dfca4f0912" name="cadmium__Cd_2__transport_out_via_proton_antiport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010570</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6a6be6f5-942a-4c62-acf5-19dfca4f0912"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cd2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cd2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TRPTRS" metaid="_40319eaf-9e30-43a6-8522-e4712915748d" name="Tryptophanyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007540</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_40319eaf-9e30-43a6-8522-e4712915748d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnatrp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trp_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trptrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INSTtex" metaid="cdc4a2be-7fbd-47c8-bbc2-eee17a32869f" name="inositol_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cdc4a2be-7fbd-47c8-bbc2-eee17a32869f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_inost_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_inost_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPT" metaid="ac1bd227-b716-4bab-8df7-0a75519b747f" name="R_ASPT" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002100</p> + <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> + <p>EC_NUMBER: 4.3.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ac1bd227-b716-4bab-8df7-0a75519b747f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SERTRS" metaid="f804cee3-3765-4d25-9e4a-ea4f4f6cadb3" name="Seryl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020870</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f804cee3-3765-4d25-9e4a-ea4f4f6cadb3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaser_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sertrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGCDr" metaid="e85307f9-e4f6-4d24-9b95-facdb10b26c3" name="phosphoglycerate_dehydrogenase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020190</p> + <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.95</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e85307f9-e4f6-4d24-9b95-facdb10b26c3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.95"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020190"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3pg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3php_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NOVBCNtpp" metaid="_5ca19ded-359b-4743-946b-f3d0123a11cc" name="Novobiocin_transport_via_TolC_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ca19ded-359b-4743-946b-f3d0123a11cc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_novbcn_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_novbcn_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROTRS" metaid="_38f0455e-f7aa-40da-b02b-4a5a0eef5801" name="Prolyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007370</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_38f0455e-f7aa-40da-b02b-4a5a0eef5801"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007370"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnapro_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_protrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DUTPDP" metaid="_33f29952-a3e2-4221-b99e-dd06006a5693" name="dUTP_diphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015440</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.23</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_33f29952-a3e2-4221-b99e-dd06006a5693"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015440"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dutp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dump_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDRPDr" metaid="_3db595ad-5b6f-402f-b8aa-1e235cb8fd82" name="R_MDRPDr" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020230</p> + <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> + <p>EC_NUMBER: 4.2.1.109</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3db595ad-5b6f-402f-b8aa-1e235cb8fd82"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.109"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020230"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5mdru1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dkmpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD40" metaid="_37eaf0db-57f8-422f-922e-522d13770c11" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C4_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_37eaf0db-57f8-422f-922e-522d13770c11"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3haACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_but2eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADSK" metaid="_85d5b406-f57f-4a73-a44b-6d017b59b2cf" name="adenylyl_sulfate_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002680</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 2.7.1.25</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_85d5b406-f57f-4a73-a44b-6d017b59b2cf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_aps_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_paps_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS120pp" metaid="ffa558f1-d74d-4319-8b63-06f62ee79683" name="cardiolipin_synthase__periplasmic__n_C12_0_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ffa558f1-d74d-4319-8b63-06f62ee79683"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pg120_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_clpn120_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MCTP2App" metaid="dd16bec1-cf8a-4c14-bab2-2885cf18c2f2" name="murein_crosslinking_transpeptidase_1A__A2pm__D_ala___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004370 ) OR ( XFCFBP8418_008630 ) OR ( XFCFBP8418_010420 ) OR ( XFCFBP8418_011310 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dd16bec1-cf8a-4c14-bab2-2885cf18c2f2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004370"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011310"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5p5p5p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="2"/> + <speciesReference constant="true" species="M_murein5px4px4p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NOtex" metaid="_126d4486-6fa6-4692-86ce-1a5e2e9b50cb" name="nitric_oxide_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_126d4486-6fa6-4692-86ce-1a5e2e9b50cb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_no_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_no_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Mntex" metaid="_9278d2b5-4c10-4130-b169-9dbfd6a40161" name="R_Mntex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9278d2b5-4c10-4130-b169-9dbfd6a40161"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mn2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mn2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADSS" metaid="df3e285e-9030-481d-8b06-a7ffb62ea79f" name="adenylosuccinate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007280</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 6.3.4.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#df3e285e-9030-481d-8b06-a7ffb62ea79f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007280"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dcamp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPt2_2pp" metaid="_0cc2f9de-5d1d-4e44-ad6b-89dda6af0c75" name="R_ASPt2_2pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025480</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0cc2f9de-5d1d-4e44-ad6b-89dda6af0c75"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> + <speciesReference constant="true" species="M_asp_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALATA_L" metaid="f85ea233-7154-4528-9ab6-5937dd7ca44a" name="L_alanine_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004540</p> + <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> + <p>EC_NUMBER: 2.6.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f85ea233-7154-4528-9ab6-5937dd7ca44a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DADK" metaid="_235f4e1e-11ac-4a32-a0a9-c87385ecabab" name="deoxyadenylate_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026070</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_235f4e1e-11ac-4a32-a0a9-c87385ecabab"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_damp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dadp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SOTA" metaid="b07c5ae3-e117-4a7c-814f-c83d7c3e8d21" name="R_SOTA" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003360</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 2.6.1.81</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b07c5ae3-e117-4a7c-814f-c83d7c3e8d21"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.81"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_sucorn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sucgsa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOHMT" metaid="_30aa2606-8808-4ee6-b4d3-e1953050bd8d" name="3_methyl_2_oxobutanoate_hydroxymethyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026560</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.1.2.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_30aa2606-8808-4ee6-b4d3-e1953050bd8d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026560"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3mob_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2dhp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ABUTtex" metaid="_19670ffc-772f-4621-82ba-26b98dad7052" name="4_aminobutyrate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_19670ffc-772f-4621-82ba-26b98dad7052"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4abut_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4abut_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGDC_r" metaid="eec6cf3f-516d-4536-ad2a-73e98b8c0ef7" name="R_AGDC_r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003030</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.5.1.25</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eec6cf3f-516d-4536-ad2a-73e98b8c0ef7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acgam6p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gam6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DDCAtex" metaid="a4794958-bba0-4dc7-a430-957e7a1309f8" name="Fatty_acid__dodecanoate__transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a4794958-bba0-4dc7-a430-957e7a1309f8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ddca_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ddca_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAGAATXF" metaid="_92feb24f-ded7-468f-8410-4bc2fc8122be" name="R_UAGAATXF" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024900</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.129</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_92feb24f-ded7-468f-8410-4bc2fc8122be"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.129"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uacgam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hdecACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_u3aga_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYALDtex" metaid="baa6d16a-533f-48ab-bb79-4bf53824fedf" name="R_GLYALDtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#baa6d16a-533f-48ab-bb79-4bf53824fedf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyald_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyald_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTP10" metaid="_251cd69f-59b0-4bbf-b9f8-66c81ff22528" name="R_NTP10" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006890</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_251cd69f-59b0-4bbf-b9f8-66c81ff22528"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_itp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_idp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RPI" metaid="_84ca884c-785c-4589-85e2-e29eef61eec5" name="ribose_5_phosphate_isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001410</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 5.3.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_84ca884c-785c-4589-85e2-e29eef61eec5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001410"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ru5p_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PCabcpp" metaid="d99d80ac-fea2-4614-8aaa-d22c5dd79db6" name="sn_glycerol_3_phosphocholine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d99d80ac-fea2-4614-8aaa-d22c5dd79db6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3pc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3pc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DSBDR" metaid="_442b5b18-fb55-4449-85d6-4a8667c22950" name="DsbD_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_006350 ) OR ( XFCFBP8418_006350 AND XFCFBP8418_013260 )</p> + <p>SUBSYSTEM: Electron_transfer</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_442b5b18-fb55-4449-85d6-4a8667c22950"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006350"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006350"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbdox_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbdrd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_VALabcpp" metaid="_4d8072c0-c917-4e4e-a984-3634d31f3449" name="L_valine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4d8072c0-c917-4e4e-a984-3634d31f3449"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_val_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_val_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RPE" metaid="ff31b7d8-2c37-4322-b512-edbde18d8a5e" name="ribulose_5_phosphate_3_epimerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026760</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 5.1.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ff31b7d8-2c37-4322-b512-edbde18d8a5e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026760"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ru5p_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_xu5p_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ANS" metaid="_32366fd1-5082-48d5-9646-3b28a7410c5b" name="anthranilate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000460 AND XFCFBP8418_026730</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_32366fd1-5082-48d5-9646-3b28a7410c5b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000460"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026730"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_chor_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_anth_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RBP4E" metaid="_5779744d-e37e-46e1-9e95-8626d440d7cd" name="R_RBP4E" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5779744d-e37e-46e1-9e95-8626d440d7cd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ru5p_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_xu5p_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASNS1" metaid="_7696c780-6ae3-4c99-bea7-10c42051dcf3" name="asparagine_synthase__glutamine_hydrolysing_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015130</p> + <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> + <p>EC_NUMBER: 6.3.5.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7696c780-6ae3-4c99-bea7-10c42051dcf3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.5.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_asn_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METAT" metaid="_1a1c7d09-cd76-4de7-9a5d-34f2985e9750" name="methionine_adenosyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007840</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 2.5.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1a1c7d09-cd76-4de7-9a5d-34f2985e9750"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR80" metaid="_678394b3-e582-47f4-8c48-c9f82945157a" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C8_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_678394b3-e582-47f4-8c48-c9f82945157a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ooctACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hoctACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOATXF" metaid="_799bdd79-bad4-4a86-bf82-e735bb863477" name="R_MOATXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015030</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.4.99.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_799bdd79-bad4-4a86-bf82-e735bb863477"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.99.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ckdo_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lipidA_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdolipid4_XF_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PCtex" metaid="_0ca2baad-8ff8-4b02-ba9a-e729b34adff4" name="glycero_3_phosphocholine_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0ca2baad-8ff8-4b02-ba9a-e729b34adff4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g3pc_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3pc_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MINCYCtpp" metaid="_727f254d-6d71-41dc-bc05-174f23061000" name="Minocycline_transport_via_TolC_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_727f254d-6d71-41dc-bc05-174f23061000"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mincyc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mincyc_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IPMDr" metaid="b277d274-82b8-4a71-93f9-cdcfa5c407cf" name="3_isopropylmalate_dehydrogenase_reversible" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021500</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.85</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b277d274-82b8-4a71-93f9-cdcfa5c407cf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.85"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021500"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3c2hmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3c4mop_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SBPA" metaid="_48b9cc5a-09a5-43de-b499-b30b85b199b8" name="R_SBPA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011030</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_48b9cc5a-09a5-43de-b499-b30b85b199b8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_s17bp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_e4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FBP" metaid="_95eaacc1-00ea-4f90-8f6f-8f850fed1a29" name="fructose_bisphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_95eaacc1-00ea-4f90-8f6f-8f850fed1a29"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AOXSr2" metaid="_9400c890-2a59-4627-8ad7-0b5bd92d25c9" name="8_amino_7_oxononanoate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004000</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.47</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9400c890-2a59-4627-8ad7-0b5bd92d25c9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.47"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004000"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pimACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_8aonn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ORNtex" metaid="_30d623cd-3157-42a3-857b-b4161c1f0c44" name="ornithine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007710</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_30d623cd-3157-42a3-857b-b4161c1f0c44"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_orn_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_orn_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PIuabcpp" metaid="_7758ea08-9ec7-40bd-80df-08c4841b230d" name="phosphate_transport_via_ABC_system__uptake__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019420 AND XFCFBP8418_019430 AND XFCFBP8418_019440 AND XFCFBP8418_019450</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7758ea08-9ec7-40bd-80df-08c4841b230d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019430"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019440"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019450"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HSTPTr" metaid="_9e184f17-f727-4bc1-b67b-703973f1bb91" name="histidinol_phosphate_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020310</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9e184f17-f727-4bc1-b67b-703973f1bb91"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020310"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_imacp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hisp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SERTRS2" metaid="d1db8a88-2e24-4a99-bfa5-e80896799f4d" name="Seryl_tRNA_synthetase__selenocystein_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020870</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d1db8a88-2e24-4a99-bfa5-e80896799f4d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnasecys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sertrna_sec_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_O2tex" metaid="c3700227-200a-4301-b3ac-fe1269c357f5" name="oxygen_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c3700227-200a-4301-b3ac-fe1269c357f5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_o2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_o2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUTRS" metaid="b8637038-f275-43b8-aa77-1e32c48fd80a" name="Glutamyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011070</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b8637038-f275-43b8-aa77-1e32c48fd80a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaglu_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glutrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUTRR" metaid="_6633a907-f3e1-4193-98fb-693bd2edb998" name="glutamyl_tRNA_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012920</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 1.2.1.70</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6633a907-f3e1-4193-98fb-693bd2edb998"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.70"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012920"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glutrna_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu1sa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaglu_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FADRx2" metaid="_1a31ffcd-1cd7-4991-ac9c-75f24efdafd8" name="R_FADRx2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002700 AND XFCFBP8418_002710</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.5.1.30</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1a31ffcd-1cd7-4991-ac9c-75f24efdafd8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.30"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002710"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002700"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AKGt2rpp" metaid="_56babd7d-178d-4e30-bbe7-37be8f99c75c" name="2_oxoglutarate_reversible_transport_via_symport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014890</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_56babd7d-178d-4e30-bbe7-37be8f99c75c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_akg_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDCP4pp" metaid="_4f680622-675b-4d0b-befc-1ac754cc150a" name="murein_D_D_carboxypeptidase__murein5p4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_018620 ) OR ( XFCFBP8418_020420 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.16.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4f680622-675b-4d0b-befc-1ac754cc150a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.16.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5p4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4p4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_GCALD" metaid="c82549a2-429a-4622-b277-a2d927e5780d" name="R_DM_GCALD" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c82549a2-429a-4622-b277-a2d927e5780d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gcald_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OCDCEAtexi" metaid="_308a73d2-096d-4b14-be3e-96175ac517ba" name="R_OCDCEAtexi" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_308a73d2-096d-4b14-be3e-96175ac517ba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ocdcea_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ocdcea_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CMtpp" metaid="a13b6201-035d-4799-b18e-bf3f1fa52249" name="Chloramphenicol_transport_via_TolC_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a13b6201-035d-4799-b18e-bf3f1fa52249"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_cm_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cm_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PMEACPE" metaid="_68a9ebb6-f1c6-44c4-a5c8-7dcee09ae7ba" name="Pimeloyl__ACP__methyl_ester_esterase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004010</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.1.1.85</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_68a9ebb6-f1c6-44c4-a5c8-7dcee09ae7ba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.1.85"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004010"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_meoh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pimACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADK1" metaid="_49cdf00d-bed3-479b-b154-c0f5fb59388e" name="adenylate_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026070</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49cdf00d-bed3-479b-b154-c0f5fb59388e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP140pp" metaid="_7a8ec943-7c19-4990-a3f3-03e43ff54b22" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7a8ec943-7c19-4990-a3f3-03e43ff54b22"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp140_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg140_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GRTT" metaid="_9978b685-ed01-4b71-bb18-16a6d0e1db8b" name="geranyltranstransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005980</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9978b685-ed01-4b71-bb18-16a6d0e1db8b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005980"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ipdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_frdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUCtex" metaid="_6083e642-12b7-4961-a2ab-988dc5346324" name="R_FUCtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6083e642-12b7-4961-a2ab-988dc5346324"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fuc_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fuc_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM3PH" metaid="_5bcf5dcc-ce35-4973-8e5d-a3acbefbccb7" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tripeptide_beta__1_4_N_acetylglucosaminidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021350</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5bcf5dcc-ce35-4973-8e5d-a3acbefbccb7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021350"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhgm3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhm3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acgam_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYOX" metaid="baa53e94-4e56-4a8a-800d-80dc093d5834" name="hydroxyacylglutathione_hydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019610</p> + <p>SUBSYSTEM: Methylglyoxal_degradation</p> + <p>EC_NUMBER: 3.1.2.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#baa53e94-4e56-4a8a-800d-80dc093d5834"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019610"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lgt_S_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lac_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FBA" metaid="d57285eb-dacd-4631-8872-dbaec147930d" name="fructose_bisphosphate_aldolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011030</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 4.1.2.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d57285eb-dacd-4631-8872-dbaec147930d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DOXRBCNtpp" metaid="b12b499f-3972-4815-a88a-a9317ef5d311" name="Doxorubicin_transport_via_TolC_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b12b499f-3972-4815-a88a-a9317ef5d311"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_doxrbcn_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_doxrbcn_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AP4AS" metaid="e2a33de6-8ba2-4520-9b91-68d823beb82f" name="R_AP4AS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023900</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e2a33de6-8ba2-4520-9b91-68d823beb82f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ap4a_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADK3" metaid="_3c33c4b5-38c9-4e55-a928-726c79ddb1d2" name="adentylate_kinase__GTP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026070</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3c33c4b5-38c9-4e55-a928-726c79ddb1d2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACOATA" metaid="d134947b-2d61-43dc-ad87-3586854783f4" name="Acetyl_CoA_ACP_transacylase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_017940</p> + <p>SUBSYSTEM: Membrane_Lipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.38</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d134947b-2d61-43dc-ad87-3586854783f4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.38"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017940"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADK4" metaid="d80fc4ec-a1a3-48fc-b5d9-663765d5ee43" name="adentylate_kinase__ITP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026070</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d80fc4ec-a1a3-48fc-b5d9-663765d5ee43"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_itp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_idp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_APRAUR" metaid="_70c48d46-da92-46e2-baa8-b8192e76e959" name="5_amino_6__5_phosphoribosylamino_uracil_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009790</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.193</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_70c48d46-da92-46e2-baa8-b8192e76e959"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.193"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009790"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_5apru_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_5aprbu_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S2FE2ST" metaid="d88fa6b4-43b9-414c-84e2-b3f14db7a4c3" name="R_S2FE2ST" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950 AND XFCFBP8418_012150</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d88fa6b4-43b9-414c-84e2-b3f14db7a4c3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012150"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="4"/> + <speciesReference constant="true" species="M_sufbcd_2fe2s_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2fe2s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufbcd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LPADSSXF" metaid="c6e32931-814b-41c7-a454-7f0a8ecffa84" name="R_LPADSSXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.4.1.182</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c6e32931-814b-41c7-a454-7f0a8ecffa84"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.1.182"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_u23ga_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lipidX_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_lipidAds_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GDPDPK" metaid="d6fbd975-bf2e-4c02-a28a-48d1ab9741ae" name="GDP_diphosphokinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004340 ) OR ( XFCFBP8418_008750 )</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.6.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d6fbd975-bf2e-4c02-a28a-48d1ab9741ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.6.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppgpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AICART" metaid="_743b940c-dc47-4773-af74-6f8f53223744" name="phosphoribosylaminoimidazolecarboxamide_formyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001030</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 2.1.2.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_743b940c-dc47-4773-af74-6f8f53223744"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_aicar_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_10fthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fprica_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S2FE2SS" metaid="df79ddf3-b54a-400f-9ed3-c4a7a1293421" name="R_S2FE2SS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950 AND XFCFBP8418_002960 AND XFCFBP8418_025330</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#df79ddf3-b54a-400f-9ed3-c4a7a1293421"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufbcd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufsesh_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_fe2_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="7"/> + <speciesReference constant="true" species="M_sufse_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_sufbcd_2fe2s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S2FE2SR" metaid="ad865030-3d0f-46b0-ae92-d51f2fe675ea" name="R_S2FE2SR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950 AND XFCFBP8418_002960 AND XFCFBP8418_025330</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ad865030-3d0f-46b0-ae92-d51f2fe675ea"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufbcd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufsesh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2fe1s_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="5"/> + <speciesReference constant="true" species="M_sufse_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufbcd_2fe2s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MECDPDH5" metaid="_3dcaee8e-0581-4fd2-a58e-36c336cea301" name="R_MECDPDH5" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012250 AND XFCFBP8418_023100</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.17.7.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3dcaee8e-0581-4fd2-a58e-36c336cea301"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.7.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012250"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023100"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2mecdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_flxr_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2mb4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_flxso_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPNDH" metaid="_4504abff-43dd-4a5c-8d7d-c99bfd5232d8" name="prephenate_dehydratase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021090</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4504abff-43dd-4a5c-8d7d-c99bfd5232d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021090"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pphn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phpyr_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_COBALT2t3pp" metaid="_413f9a7c-17cb-4b24-a54b-9139a7907c2c" name="cobalt__Co_2__transport_out_via_proton_antiport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010570</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_413f9a7c-17cb-4b24-a54b-9139a7907c2c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cobalt2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cobalt2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MPTG2" metaid="ea8026d5-3079-404e-ae94-de7266c66bb9" name="murein_polymerizing_transglycosylase_2__three_linked_units_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004700 AND XFCFBP8418_008630 ) OR ( XFCFBP8418_004700 AND XFCFBP8418_010420 ) OR ( XFCFBP8418_004700 AND XFCFBP8418_020460 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ea8026d5-3079-404e-ae94-de7266c66bb9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020460"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010420"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uaagmda_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_udcpdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_murein5p5p5p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GAPD" metaid="b831af11-11e9-46cd-a767-98d8e6ae317b" name="glyceraldehyde_3_phosphate_dehydrogenase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007260</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 1.2.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b831af11-11e9-46cd-a767-98d8e6ae317b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007260"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_13dpg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PYK" metaid="_043c5f9c-0c78-4d01-b3a3-8e821cd2855f" name="pyruvate_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011050</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 2.7.1.40</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_043c5f9c-0c78-4d01-b3a3-8e821cd2855f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.40"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_QUIN2tex" metaid="_31c3858e-2a09-490c-83ca-e7646693cc58" name="R_QUIN2tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_31c3858e-2a09-490c-83ca-e7646693cc58"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_quin_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_quin_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHTBSptspp" metaid="a7cd7347-243a-4ea4-86c6-cc55b9b7ce10" name="R_CHTBSptspp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a7cd7347-243a-4ea4-86c6-cc55b9b7ce10"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chtbs_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_chtbs6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPPGO" metaid="_3a1ca359-53dd-4137-a384-4c4aed4c2efb" name="protoporphyrinogen_oxidase__aerobic_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.3.3.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3a1ca359-53dd-4137-a384-4c4aed4c2efb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.3.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1.5"/> + <speciesReference constant="true" species="M_pppg9_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppp9_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="3"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSP_L" metaid="_486e5a3f-1611-4213-a1af-da0364cd412c" name="phosphoserine_phosphatase__L_serine_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 3.1.3.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_486e5a3f-1611-4213-a1af-da0364cd412c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG140abcpp" metaid="d569cf55-f1ce-4fac-a614-263236ad327b" name="phosphatidylglycerol_transport_via_ABC_system__n_C14_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d569cf55-f1ce-4fac-a614-263236ad327b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pg140_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BHEXAMD_p" metaid="b1754b01-de38-4b32-909c-2c8a0bf2f851" name="R_BHEXAMD_p" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b1754b01-de38-4b32-909c-2c8a0bf2f851"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chtbs_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acgam_p" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IG3PS" metaid="_8316c47c-13b2-4967-96d9-149ef52f5e2b" name="Imidazole_glycerol_3_phosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020270 AND XFCFBP8418_020290</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8316c47c-13b2-4967-96d9-149ef52f5e2b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020290"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020270"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prlp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_aicar_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_eig3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ZN2t3pp" metaid="_89074f04-5c71-4b22-87a4-e9cc5b218486" name="zinc__Zn_2__transport_out_via_proton_antiport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010570</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_89074f04-5c71-4b22-87a4-e9cc5b218486"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_zn2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_zn2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MCTP1Bpp" metaid="_43d8c899-b964-402b-8cc3-5b322c5cebdd" name="murein_crosslinking_transpeptidase_1B__A2pm__A2pm___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_008630 ) OR ( XFCFBP8418_010420 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_43d8c899-b964-402b-8cc3-5b322c5cebdd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010420"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein5px3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_alaala_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG181abcpp" metaid="ae101868-39b2-4394-b08d-b200e2aeacda" name="phosphatidylglycerol_transport_via_ABC_system__n_C18_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ae101868-39b2-4394-b08d-b200e2aeacda"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg181_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHNPTE" metaid="_9c5a9fe1-95bb-4d1c-96ca-65e1bbf685c0" name="R_DHNPTE" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007450</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 5.1.99.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9c5a9fe1-95bb-4d1c-96ca-65e1bbf685c0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.99.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007450"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhnpt_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dhmpt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HYXNtpp" metaid="_4a5f98fb-3bd4-4023-8a75-76dcf7743a8e" name="R_HYXNtpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4a5f98fb-3bd4-4023-8a75-76dcf7743a8e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hxan_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hxan_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_E4P" metaid="_16143a2a-81df-4625-8e0d-024f7c1d9265" name="R_DM_E4P" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_16143a2a-81df-4625-8e0d-024f7c1d9265"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_e4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ILEtex" metaid="_7fb97607-e83e-4f04-a22b-61d665599138" name="L_isoleucine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7fb97607-e83e-4f04-a22b-61d665599138"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ile_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ile_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYTK1" metaid="b35cfab3-f230-41ae-ba8f-262dcad25287" name="cytidylate_kinase__CMP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004870</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b35cfab3-f230-41ae-ba8f-262dcad25287"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOX2abcpp" metaid="_62738479-cf85-4018-aec9-41eed2607914" name="R_METSOX2abcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_62738479-cf85-4018-aec9-41eed2607914"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_metsox_R_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_metsox_R_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TRPS2" metaid="d4ee51b8-8b6e-4e04-a97f-5f9d65da4c9a" name="R_TRPS2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003820 AND XFCFBP8418_003830</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d4ee51b8-8b6e-4e04-a97f-5f9d65da4c9a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003830"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003820"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_indole_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trp_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DCTPD" metaid="_27d1f9b3-342a-4707-8c9e-b20105bc33ac" name="dCTP_deaminase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011560</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.5.4.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_27d1f9b3-342a-4707-8c9e-b20105bc33ac"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011560"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dutp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL140t2pp" metaid="d0a9a803-5d82-4d2a-8f86-12aad13447e7" name="fatty_acid_CoA_ligase__tetradecanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d0a9a803-5d82-4d2a-8f86-12aad13447e7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ttdca_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdcoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA181abcpp" metaid="_2882c2e6-f3ce-42a7-9e5b-a3a5b2a932ba" name="phosphatidate_transport_via_ABC_system__n_C18_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2882c2e6-f3ce-42a7-9e5b-a3a5b2a932ba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa181_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYKr" metaid="_01d621a5-aaa8-4c78-95a3-bd1c60708a0a" name="glycerol_kinase__reversible_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020720</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.30</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01d621a5-aaa8-4c78-95a3-bd1c60708a0a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.30"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020720"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP120" metaid="_5f9dd26b-c6e9-445b-8eb1-8aec7dd5ab14" name="phosphatidylglycerol_phosphate_phosphatase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f9dd26b-c6e9-445b-8eb1-8aec7dd5ab14"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp120_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pg120_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUt4pp" metaid="_719fa133-2460-4968-a297-4a346376a133" name="R_GLUt4pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000650</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_719fa133-2460-4968-a297-4a346376a133"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_na1_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_na1_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GUAtpp" metaid="b9b2cd98-3901-4d60-8afc-ebd4c46d93cd" name="R_GUAtpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b9b2cd98-3901-4d60-8afc-ebd4c46d93cd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gua_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gua_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NODOy" metaid="bea88a6d-157a-4674-a63a-db6fec619225" name="nitric_oxide_dioxygenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014590</p> + <p>SUBSYSTEM: Nitrogen_Metabolism</p> + <p>EC_NUMBER: 1.14.12.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bea88a6d-157a-4674-a63a-db6fec619225"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.14.12.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_o2_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_no_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_no3_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DTMPK" metaid="_0da9684f-202c-4ba5-b34c-5a0cf61f6192" name="dTMP_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006690</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0da9684f-202c-4ba5-b34c-5a0cf61f6192"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006690"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dtmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dtdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SUCOAS" metaid="ea388af7-db37-4569-8f66-ef10468d4987" name="succinyl_CoA_synthetase__ADP_forming_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011960 AND XFCFBP8418_011970</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 6.2.1.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ea388af7-db37-4569-8f66-ef10468d4987"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011970"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011960"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_succoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYTK2" metaid="e66be1e9-3407-4b0b-ac83-de6a60fa30fe" name="cytidylate_kinase__dCMP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004870</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e66be1e9-3407-4b0b-ac83-de6a60fa30fe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dcmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dcdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PNTK" metaid="da5808be-1ffe-4b03-837f-0c48cf839c38" name="pantothenate_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018190</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.1.33</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#da5808be-1ffe-4b03-837f-0c48cf839c38"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.33"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018190"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pnto_R_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4ppan_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PAPPT3" metaid="c1fdd5ff-6f8e-4c9e-a65a-87170bae8b65" name="phospho_N_acetylmuramoyl_pentapeptide_transferase__meso_2_6_diaminopimelate_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011280</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.7.8.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c1fdd5ff-6f8e-4c9e-a65a-87170bae8b65"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011280"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udcpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ugmda_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_uagmda_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HEPT1" metaid="_121569c1-aca4-4a43-a54e-7ab8a6ad28d1" name="R_HEPT1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019540</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_121569c1-aca4-4a43-a54e-7ab8a6ad28d1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_adphep_LD_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lipidA_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hlipidA_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR161tipp" metaid="abe99089-4242-4fb7-92aa-8e1384b39616" name="R_12DGR161tipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#abe99089-4242-4fb7-92aa-8e1384b39616"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr161_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_12dgr161_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NNAMr" metaid="_45edd948-9a91-4a3d-ae9c-7d5a9ef1047b" name="nicotinamidase__reversible" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020780</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.5.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_45edd948-9a91-4a3d-ae9c-7d5a9ef1047b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020780"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ncam_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PD5" metaid="e0007e94-29e4-4615-90ae-66b2a8ea76f4" name="glycerol_3_phosphate_dehydrogenase__ubiquinone_8_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020700</p> + <p>SUBSYSTEM: Glycerol_Degradation</p> + <p>EC_NUMBER: 1.1.5.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e0007e94-29e4-4615-90ae-66b2a8ea76f4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.5.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020700"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTPCI" metaid="_8228c5ad-649a-49e1-be1f-4c1f6da9d41b" name="GTP_cyclohydrolase_I" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001100</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.5.4.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8228c5ad-649a-49e1-be1f-4c1f6da9d41b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ahdt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HEPT3" metaid="_61f4e47d-1ec6-4b63-8e55-8290a85c1049" name="R_HEPT3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019540</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_61f4e47d-1ec6-4b63-8e55-8290a85c1049"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_adphep_LD_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phhlipidA_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hphhlipidA_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PD2" metaid="f56c2f7a-1537-4b9c-bbf8-8645b86821d8" name="glycerol_3_phosphate_dehydrogenase__NADP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018110</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.1.1.94</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f56c2f7a-1537-4b9c-bbf8-8645b86821d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.94"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018110"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NACtex" metaid="_5f683c5e-d94b-4fef-839b-3363659b8be3" name="Nicotinic_acid_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f683c5e-d94b-4fef-839b-3363659b8be3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nac_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nac_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_P5CG" metaid="_01ee6104-d3d1-4fbc-ba9e-8651bff7eb2f" name="R_P5CG" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01ee6104-d3d1-4fbc-ba9e-8651bff7eb2f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu5sa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_1pyr5c_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CDGS" metaid="_297a559f-86bd-4d65-9a6d-81df9ee5d9ea" name="7_deaza_7_carboxyguanine_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_016450</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.3.99.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_297a559f-86bd-4d65-9a6d-81df9ee5d9ea"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.99.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016450"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cph4_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cdg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_P5CD" metaid="bf8bce5c-5964-426a-8ddd-934248037087" name="1_pyrroline_5_carboxylate_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 1.5.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bf8bce5c-5964-426a-8ddd-934248037087"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_1pyr5c_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CDGR" metaid="b12453cd-1703-4b8e-8a28-dd0d81dc44ad" name="7_cyano_7_deazaguanine_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021550</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.7.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b12453cd-1703-4b8e-8a28-dd0d81dc44ad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.7.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_preq0_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_preq1_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DGK1" metaid="_9f81734d-b4bd-41d4-8ddf-79e9695a25a9" name="deoxyguanylate_kinase__dGMP_ATP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002650</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9f81734d-b4bd-41d4-8ddf-79e9695a25a9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dgmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dgdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT120" metaid="_8fbb9223-3e34-4dca-b9f7-5d7ab75b20e5" name="R_G3PAT120" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8fbb9223-3e34-4dca-b9f7-5d7ab75b20e5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ddcaACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_1ddecg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PHETRS" metaid="d7ced00b-f100-410f-aaeb-4d131894d762" name="Phenylalanyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011750 AND XFCFBP8418_011760</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d7ced00b-f100-410f-aaeb-4d131894d762"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011750"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011760"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phe_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaphe_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phetrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGLYCP" metaid="b7c0d0ef-b131-43f4-8db4-e4314519c5a0" name="Phosphoglycolate_phosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005170</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.1.3.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b7c0d0ef-b131-43f4-8db4-e4314519c5a0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005170"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2pglyc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyclt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGtex" metaid="c0a2be14-66bf-4a69-91bb-52745a063137" name="L_arginine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c0a2be14-66bf-4a69-91bb-52745a063137"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_arg_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_arg_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAMAS" metaid="_6ebf5651-80a6-4232-ac63-3082145b32ca" name="UDP_N_acetylmuramoyl_L_alanine_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011250</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6ebf5651-80a6-4232-ac63-3082145b32ca"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uamr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uama_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADNUC" metaid="_36c795ab-3c17-4599-a6b7-1b9a0fd6f7ec" name="adenosine_hydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.2.2.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_36c795ab-3c17-4599-a6b7-1b9a0fd6f7ec"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.2.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ade_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_rib_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADNt2pp" metaid="c3206781-27f3-4c37-9dc2-c78669cf6757" name="R_ADNt2pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c3206781-27f3-4c37-9dc2-c78669cf6757"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_adn_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NOtpp" metaid="_78e5aea7-2ac6-4a3c-830f-daf94491487e" name="NO_transport__diffusion_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_78e5aea7-2ac6-4a3c-830f-daf94491487e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_no_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_no_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XYLtex" metaid="fa6915be-2f49-4f71-8fcd-6aebad75ef47" name="R_XYLtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fa6915be-2f49-4f71-8fcd-6aebad75ef47"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_xyl_D_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_xyl_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_P5CR" metaid="_158dba30-14f5-401a-b1d8-12dcb1535288" name="pyrroline_5_carboxylate_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013370</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 1.5.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_158dba30-14f5-401a-b1d8-12dcb1535288"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013370"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_1pyr5c_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL120t2pp" metaid="_94eba020-6f77-43c1-9fe5-bb1bd7e6aad6" name="fatty_acid_CoA_ligase__dodecanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_94eba020-6f77-43c1-9fe5-bb1bd7e6aad6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ddca_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ddcacoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LYSTRS" metaid="_018c56f1-8d37-413b-bb73-e5f0af6dc277" name="Lysyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023900</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_018c56f1-8d37-413b-bb73-e5f0af6dc277"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_lys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnalys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lystrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLTGY4pp" metaid="b2dfa850-588a-40c9-a419-56474c2e0f12" name="murein_lytic_transglycosylase__murein4px4p4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_003940 ) OR ( XFCFBP8418_019770 )</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b2dfa850-588a-40c9-a419-56474c2e0f12"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019770"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein4px4p4p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4px4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDPGLCUR4EP" metaid="_272c6c48-7392-44f5-8b9d-7f29e040131e" name="R_UDPGLCUR4EP" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020820</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 5.1.3.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_272c6c48-7392-44f5-8b9d-7f29e040131e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.3.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udpglcur_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_udpgalur_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PTPAT" metaid="f30e63e6-c461-4c82-be34-8bca956defa3" name="pantetheine_phosphate_adenylyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025440</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f30e63e6-c461-4c82-be34-8bca956defa3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025440"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pan4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dpcoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GRXR" metaid="a46ca013-5f71-401c-8638-1c1d74832e05" name="glutaredoxin_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012410</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.8.4.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a46ca013-5f71-401c-8638-1c1d74832e05"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.4.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012410"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gthox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUDxi" metaid="bc91dd32-ffce-4384-a9af-332161bfeedb" name="R_GLUDxi" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001660</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: 1.4.1.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bc91dd32-ffce-4384-a9af-332161bfeedb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.4.1.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001660"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OCBT" metaid="_5964bf74-d6e5-4ce0-93d3-c13c6acea5bc" name="ornithine_carbamoyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025290</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 2.1.3.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5964bf74-d6e5-4ce0-93d3-c13c6acea5bc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.3.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025290"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_orn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cbp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_citr_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MEPCT" metaid="_17165073-998e-4383-8135-c93aeb2917b9" name="2_C_methyl_D_erythritol_4_phosphate_cytidylyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022200</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_17165073-998e-4383-8135-c93aeb2917b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022200"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2me4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4c2me_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UM4PL" metaid="_53df3af8-acf6-4da2-bf15-451e744c9a05" name="UDP_N_acetylmuramate_L_alanyl_gamma_D_glutamyl_meso_diaminopimelate_D_alanine_ligase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026060</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: 6.3.2.45</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_53df3af8-acf6-4da2-bf15-451e744c9a05"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.45"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026060"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uamr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdapDala_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_um4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP141" metaid="_73fd0d3c-0584-4c1b-948f-a56883aee2d2" name="phosphatidylglycerol_phosphate_phosphatase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_73fd0d3c-0584-4c1b-948f-a56883aee2d2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pg141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_o2_e" metaid="_646a44a4-5b92-488c-9b8e-b9fe9e3dfa92" name="R_EX_o2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_646a44a4-5b92-488c-9b8e-b9fe9e3dfa92"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_o2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADMDCr" metaid="_4822dbc6-d580-47d8-9c1c-9835a304b3e9" name="Adenosylmethionine_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002270</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 4.1.1.50</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4822dbc6-d580-47d8-9c1c-9835a304b3e9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.50"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002270"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ametam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP140" metaid="e4b730ae-8294-4c36-b8a6-d0a83b9a9a82" name="phosphatidylglycerol_phosphate_phosphatase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e4b730ae-8294-4c36-b8a6-d0a83b9a9a82"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pg140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACCOACr" metaid="_9a723345-b105-440f-adb5-ccdf64f4e741" name="R_ACCOACr" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003020 AND XFCFBP8418_014550 AND XFCFBP8418_014560 AND XFCFBP8418_026800</p> + <p>SUBSYSTEM: Membrane_Lipid_Metabolism</p> + <p>EC_NUMBER: 6.4.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a723345-b105-440f-adb5-ccdf64f4e741"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.4.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026800"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014560"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003020"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014550"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hco3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_malcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ULA4NFT" metaid="_6b3c7323-6ecc-41de-ac76-774c1351a483" name="R_ULA4NFT" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006440</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.1.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6b3c7323-6ecc-41de-ac76-774c1351a483"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006440"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_10fthf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpLa4n_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpLa4fn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_URAtex" metaid="f361a2e8-85b7-41d8-9aeb-6581c6c97fdd" name="R_URAtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f361a2e8-85b7-41d8-9aeb-6581c6c97fdd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ura_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ura_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDEP2pp" metaid="_53a270fc-b2b1-44b6-850e-cd29a6c12160" name="murein_D_D_endopeptidase__murein3px4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_53a270fc-b2b1-44b6-850e-cd29a6c12160"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_murein3px4p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4p3p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRAIS" metaid="_8aceeb76-a43c-4b0b-80c2-3932021ab547" name="phosphoribosylaminoimidazole_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006650</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 6.3.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8aceeb76-a43c-4b0b-80c2-3932021ab547"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fpram_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_air_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_cobalt2_e" metaid="_089057f2-9126-4ed3-9ed5-549b47a61c69" name="R_EX_cobalt2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_089057f2-9126-4ed3-9ed5-549b47a61c69"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_cobalt2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SULabcpp" metaid="eb51e90d-10c2-448b-96d2-005c175b90c1" name="sulfate_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004070 AND XFCFBP8418_004080 AND XFCFBP8418_004090 AND XFCFBP8418_004100</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eb51e90d-10c2-448b-96d2-005c175b90c1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004100"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004080"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_so4_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_so4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP160abcpp" metaid="_2bcff870-8734-42d6-a979-38b35526bbce" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C16_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2bcff870-8734-42d6-a979-38b35526bbce"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp160_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACALDtpp" metaid="_4c8dad63-4c56-4843-8e1b-dcd6a2151f97" name="R_ACALDtpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4c8dad63-4c56-4843-8e1b-dcd6a2151f97"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acald_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acald_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSDtex" metaid="_17999d1d-0dac-4cb1-a5b1-b1cb4734d30e" name="R_CYSDtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_17999d1d-0dac-4cb1-a5b1-b1cb4734d30e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_D_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cys_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DMQMT" metaid="f192174a-4e57-4847-bd91-879239e05dbe" name="3_Dimethylubiquinonol_3_methyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005180</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.1.1.64</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f192174a-4e57-4847-bd91-879239e05dbe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.64"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2omhmbl_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ahcys_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SPMDabcpp" metaid="c5945588-1dab-4e2e-ac23-11a842cff4b9" name="spermidine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.31</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c5945588-1dab-4e2e-ac23-11a842cff4b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_spmd_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_spmd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPO5" metaid="c9b32a8b-ef71-4fc9-84f2-8f381ce673cc" name="L_aspartate_oxidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000550</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c9b32a8b-ef71-4fc9-84f2-8f381ce673cc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iasp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAGCVT" metaid="d78d7c18-3e2f-4bb8-ae04-6dcad5b190d1" name="UDP_N_acetylglucosamine_1_carboxyvinyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003450</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d78d7c18-3e2f-4bb8-ae04-6dcad5b190d1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003450"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uacgam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_uaccg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPO3" metaid="df514e5b-3ab3-485e-99b3-e3f85b6fb9d6" name="R_ASPO3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000550</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#df514e5b-3ab3-485e-99b3-e3f85b6fb9d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iasp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_h2o_e" metaid="_61cec249-2342-4783-8c02-2d66ef9bd2b7" name="R_EX_h2o_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_61cec249-2342-4783-8c02-2d66ef9bd2b7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MTHFR2" metaid="_152f1441-c730-4edb-8fe8-db9ebe5ffd36" name="5_10_methylenetetrahydrofolate_reductase__NADH_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023810</p> + <p>SUBSYSTEM: Folate_Metabolism</p> + <p>EC_NUMBER: 1.5.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_152f1441-c730-4edb-8fe8-db9ebe5ffd36"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_5mthf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Actex" metaid="_79c4f963-40f3-4233-8ecd-eaab21f9a788" name="R_Actex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_79c4f963-40f3-4233-8ecd-eaab21f9a788"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_na1_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_ac_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ac_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_na1_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G1PACT" metaid="_253f3d72-ff88-4265-a00e-0c4e07886924" name="glucosamine_1_phosphate_N_acetyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023670</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.157</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description 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reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_97e52e9f-73df-4d9e-92d4-050a7fbb8b07"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2s_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2s_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS140pp" metaid="_84c0c025-1c66-4a5a-9f81-a073f398525c" name="cardiolipin_synthase__periplasmic__n_C14_0_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_84c0c025-1c66-4a5a-9f81-a073f398525c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" 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</rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011190"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_u3aga_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_u3hga_XF_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPO6" metaid="ecfae277-ee16-4d2b-8dda-a9810b0053c2" name="L_aspartate_oxidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000550</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ecfae277-ee16-4d2b-8dda-a9810b0053c2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iasp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PANTS" metaid="_16d88e10-4b9d-4556-a796-6b1258ad22fa" name="pantothenate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026550</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_16d88e10-4b9d-4556-a796-6b1258ad22fa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pant_R_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_B_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pnto_R_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_co2_e" metaid="_2711df0f-e364-4cea-8eee-b6f411cdfa9e" name="R_EX_co2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2711df0f-e364-4cea-8eee-b6f411cdfa9e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_co2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSP" metaid="_4641d575-ba0f-40e8-a26d-932fb2108f61" name="R_PSP" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> + <p>EC_NUMBER: 3.1.3.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4641d575-ba0f-40e8-a26d-932fb2108f61"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD180" metaid="b94c0c09-7ccb-4593-b50a-9da601600d3c" name="Phosphatidylserine_decarboxylase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 4.1.1.65</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b94c0c09-7ccb-4593-b50a-9da601600d3c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ps180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe180_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM4PApp" metaid="_045cf426-4bf4-480a-b9dc-8320ce07417a" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tetrapeptide_amidase__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011590</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: 3.5.1.29</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_045cf426-4bf4-480a-b9dc-8320ce07417a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.29"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdapDala_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD181" metaid="a5849849-8097-47e6-9bf0-a05c53ddde4b" name="Phosphatidylserine_decarboxylase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 4.1.1.65</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a5849849-8097-47e6-9bf0-a05c53ddde4b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ps181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NODOx" metaid="c3fb34ba-15f5-4a90-a6b6-2d5547d91e2b" name="nitric_oxide_dioxygenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014590</p> + <p>SUBSYSTEM: Nitrogen_Metabolism</p> + <p>EC_NUMBER: 1.14.12.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c3fb34ba-15f5-4a90-a6b6-2d5547d91e2b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.14.12.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_no_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_no3_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2tpp" metaid="fed4783d-7b15-4b74-88bc-2fbfb4de6b6f" name="R_H2tpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fed4783d-7b15-4b74-88bc-2fbfb4de6b6f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_nh4_e" metaid="_14ff9c79-46cc-4a9b-8e19-bec5265cf89e" name="R_EX_nh4_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_14ff9c79-46cc-4a9b-8e19-bec5265cf89e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR160tipp" metaid="_9ddb6a17-a564-4404-aa8d-38886cdd19b9" name="R_12DGR160tipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9ddb6a17-a564-4404-aa8d-38886cdd19b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr160_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_12dgr160_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OMBZLM" metaid="_01570b3c-6b93-4c60-9833-0752ff28d461" name="2_Octaprenyl_6_methoxy_benzoquinol_methylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002810</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.1.1.201</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01570b3c-6b93-4c60-9833-0752ff28d461"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.201"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2ombzl_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2ommbl_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ahcys_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TSULabcpp" metaid="_8460b634-1a44-4244-a0ef-84ccf29747a9" name="thiosulfate_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004070 AND XFCFBP8418_004080 AND XFCFBP8418_004090 AND XFCFBP8418_004100</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8460b634-1a44-4244-a0ef-84ccf29747a9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004100"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004080"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tsul_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tsul_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRTRS" metaid="b8eab933-0fa6-4c20-bedd-edae289ea018" name="Threonyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011800</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b8eab933-0fa6-4c20-bedd-edae289ea018"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011800"/> + </fbc:geneProductAssociation> + <listOfReactants> + 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xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_013f4f8f-0241-4957-bada-351b1d2228a8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001040"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pram_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gar_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP160" metaid="_2eb409c6-b02a-4490-962f-92cb2676f703" name="phosphatidylglycerol_phosphate_phosphatase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2eb409c6-b02a-4490-962f-92cb2676f703"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg160_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYStex" metaid="ab144e88-6902-4e91-ae5a-c420ed7d4cc7" name="L_cysteine_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ab144e88-6902-4e91-ae5a-c420ed7d4cc7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cys_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HCO3E" metaid="c28c9d1c-57dd-419d-925b-53bc5d6054f3" name="HCO3_equilibration_reaction" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010460</p> + <p>SUBSYSTEM: Cyanate_degradation</p> + <p>EC_NUMBER: 4.2.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c28c9d1c-57dd-419d-925b-53bc5d6054f3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010460"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hco3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP161" metaid="_69083ce4-81a0-4c4a-beaa-6b65e08b2e1b" name="phosphatidylglycerol_phosphate_phosphatase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_69083ce4-81a0-4c4a-beaa-6b65e08b2e1b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pg161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TMPKr" metaid="_0198f89e-6891-4d38-bcb7-5edf188f5c07" name="thiamine_phosphate_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009740</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.4.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0198f89e-6891-4d38-bcb7-5edf188f5c07"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009740"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thmmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thmpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_FRMD" metaid="ce369cc1-6ad5-4d1b-bf90-592514d09e8b" name="R_DM_FRMD" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ce369cc1-6ad5-4d1b-bf90-592514d09e8b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_frmd_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS9" metaid="_5bc43a5a-6127-4454-ba97-cb53be9790ed" name="R_AACPS9" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025958</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5bc43a5a-6127-4454-ba97-cb53be9790ed"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025958"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_octa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + 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</rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ophb_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2oph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL141t2pp" metaid="_0b52d4fd-a030-47fb-99bf-0a40e19a3cb4" name="fatty_acid_CoA_ligase__tetradecenoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0b52d4fd-a030-47fb-99bf-0a40e19a3cb4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ttdcea_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference 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+ </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_adn_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adn_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACt2rex" metaid="c7e5b008-44fc-4774-91ff-3ac43427dd93" name="R_ACt2rex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c7e5b008-44fc-4774-91ff-3ac43427dd93"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ac_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ac_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDPG4E" metaid="_4d72f9cb-f661-4f28-9738-3104f805018d" name="UDPglucose_4_epimerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 5.1.3.2</p> + </body> + </notes> + <annotation> + 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xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002620</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_39c287d2-22d6-4e29-ba3e-c41135c6196b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP10" metaid="ac88c72c-c847-4b90-a7cf-67d2b7d7baba" name="Nucleoside_triphosphate_pyrophosphorylase__ditp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002620</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ac88c72c-c847-4b90-a7cf-67d2b7d7baba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ditp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dimp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AKP1" metaid="_5f39b478-414d-4cff-80b0-3471249098b5" name="alkaline_phosphatase__Dihydroneopterin_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006010</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.1.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f39b478-414d-4cff-80b0-3471249098b5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006010"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ahdt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="3"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_dhnpt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDCP3App" metaid="_46a42bc0-a5a3-4663-b4f2-098b6013a76d" name="murein_L_D_carboxypeptidase__murein5px3p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.17.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_46a42bc0-a5a3-4663-b4f2-098b6013a76d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5px3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein3px3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_alaala_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_fru_e" metaid="bd070f57-ef0c-4e22-8ebb-4b130fee5e15" name="R_EX_fru_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bd070f57-ef0c-4e22-8ebb-4b130fee5e15"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_fru_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G5SD" metaid="_5e5a6203-6e16-45a3-ac35-68474577faeb" name="glutamate_5_semialdehyde_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025220</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 1.2.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5e5a6203-6e16-45a3-ac35-68474577faeb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025220"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu5sa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG120abcpp" metaid="_1975a1ad-dcdc-4c11-8cc8-585ca1e0189d" name="phosphatidylglycerol_transport_via_ABC_system__n_C12_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1975a1ad-dcdc-4c11-8cc8-585ca1e0189d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg120_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg120_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALATRS" metaid="_10bf1fc9-8ae9-4c5e-b9a5-1272e728f66b" name="Alanyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015200</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_10bf1fc9-8ae9-4c5e-b9a5-1272e728f66b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015200"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaala_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_alatrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UGLT" metaid="f5315705-4bdc-4bd0-bde5-4086d5e04555" name="UDPglucose__hexose_1_phosphate_uridylyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.7.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f5315705-4bdc-4bd0-bde5-4086d5e04555"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gal1p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g1p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpgal_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGDI_1" metaid="_9a35f452-ad2d-45eb-968e-861d802e0d77" name="R_AGDI_1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004890</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 3.5.3.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a35f452-ad2d-45eb-968e-861d802e0d77"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.3.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_agm_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_Ncbmpts_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ICYSDS" metaid="c5d2b5ae-ffc2-4230-b55c-96ce23335f77" name="ISC_Cysteine_desulfuration" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002960</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c5d2b5ae-ffc2-4230-b55c-96ce23335f77"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iscs_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iscssh_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS160pp" metaid="_5537e257-21c6-450f-a2aa-66f24e786a4b" name="cardiolipin_synthase__periplasmic__n_C16_0_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5537e257-21c6-450f-a2aa-66f24e786a4b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pg160_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_clpn160_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UGMDDS" metaid="_6a1f65bb-3745-42d0-938e-35e94dab6724" name="UDP_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_alanine_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011290</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6a1f65bb-3745-42d0-938e-35e94dab6724"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011290"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_alaala_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ugmd_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ugmda_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALAt2pp" metaid="_3b2d1e9b-1c85-4c12-82dd-7cff859a2796" name="L_alanine_transport_in_via_proton_symport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3b2d1e9b-1c85-4c12-82dd-7cff859a2796"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS8" metaid="_083a9bec-2e42-4a56-9543-5e74f0b5fbec" name="R_AACPS8" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025957</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_083a9bec-2e42-4a56-9543-5e74f0b5fbec"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025957"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dca_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dcaACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ETOHtrpp" metaid="be0ab22f-7c5e-46a5-912b-90282c14ca8d" name="R_ETOHtrpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#be0ab22f-7c5e-46a5-912b-90282c14ca8d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_etoh_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_etoh_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA161" metaid="c5cb8e82-ea82-41ec-97c0-030e7cfc14c8" name="Phosphatidylserine_syntase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c5cb8e82-ea82-41ec-97c0-030e7cfc14c8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdhdec9eg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ps161_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS7" metaid="_881173e0-e214-4f00-9868-da894511bbf9" name="R_AACPS7" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025956</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_881173e0-e214-4f00-9868-da894511bbf9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025956"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ddca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ddcaACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA160" metaid="_3af0fb3a-041f-49ca-a021-1dff6738a72b" name="Phosphatidylserine_syntase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3af0fb3a-041f-49ca-a021-1dff6738a72b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdhdecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ps160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS6" metaid="_72e77e6a-c3b9-43cc-b100-5758dbd25509" name="R_AACPS6" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025955</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_72e77e6a-c3b9-43cc-b100-5758dbd25509"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025955"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ocdca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ocdcaACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MMSAD3" metaid="c4305d14-50b5-4e44-9117-70f366f9fc84" name="methylmalonate_semialdehyde_dehydrogenase__malonic_semialdehyde_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.2.1.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c4305d14-50b5-4e44-9117-70f366f9fc84"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_msa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS5" metaid="cc8eef06-b2af-4f40-a78c-dd54928aa991" name="R_AACPS5" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025954</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cc8eef06-b2af-4f40-a78c-dd54928aa991"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025954"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ocdcea_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_octeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS4" metaid="_5058549f-0714-424c-bdba-27365bbd9aef" name="R_AACPS4" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025953</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5058549f-0714-424c-bdba-27365bbd9aef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025953"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hdcea_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hdeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LYSt3r" metaid="_4eee9502-90f0-4fef-b8f3-ceedca7c6099" name="R_LYSt3r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013540</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4eee9502-90f0-4fef-b8f3-ceedca7c6099"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_lys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_lys_L_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS3" metaid="ebe987f4-b5a1-4b5c-b3a0-ee9e21ca82ba" name="R_AACPS3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025952</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ebe987f4-b5a1-4b5c-b3a0-ee9e21ca82ba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025952"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hdca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + 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rdf:about="#_42a21866-b7d0-4ff6-8ee2-8d37d998c3ec"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.8.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_succoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acac_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_aacoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYC3Pabcpp" metaid="_242fc832-4f77-4608-b964-ee1b8debb0a3" name="sn_Glycerol_3_phosphate_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_242fc832-4f77-4608-b964-ee1b8debb0a3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS120" metaid="_4fc491f7-a221-48ec-9446-38f1687f0093" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4fc491f7-a221-48ec-9446-38f1687f0093"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dcaACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3oddecACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS2" metaid="_6000cb6e-ade8-45f3-98e9-39dc1d414e56" name="R_AACPS2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025951</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6000cb6e-ade8-45f3-98e9-39dc1d414e56"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025951"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ttdcea_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOX1tex" metaid="_93de9196-0857-4430-a373-86039c814f4d" name="R_METSOX1tex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_93de9196-0857-4430-a373-86039c814f4d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_metsox_S_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_metsox_S_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS121" metaid="_7dc727be-3606-40dd-9c9a-7ba4444a936c" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C12_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7dc727be-3606-40dd-9c9a-7ba4444a936c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdec3eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3ocddec5eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS1" metaid="_9d4ae961-5fcc-416e-8f9f-dbc6ca85a10a" name="R_AACPS1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9d4ae961-5fcc-416e-8f9f-dbc6ca85a10a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ttdca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_myrsACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FMNRx2" metaid="d4736fee-2215-4fbb-a33e-71063cbc9056" name="FMN_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002700 AND XFCFBP8418_002710</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.5.1.38</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d4736fee-2215-4fbb-a33e-71063cbc9056"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.38"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002710"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002700"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fmn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fmnh2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_LesA_e" metaid="_97bd024a-a074-4c59-b585-7cd099d362f0" name="R_DM_LesA_e" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_97bd024a-a074-4c59-b585-7cd099d362f0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_LesA_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL80t2pp" metaid="_901fc987-d81e-4e25-a9b6-683c318ff94d" name="fatty_acid_CoA_ligase__octanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_901fc987-d81e-4e25-a9b6-683c318ff94d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_octa_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_occoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP181" metaid="_44c752e9-a069-476f-93a5-d633b4fb84d5" name="phosphatidylglycerol_phosphate_phosphatase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_44c752e9-a069-476f-93a5-d633b4fb84d5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp181_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg181_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP180" metaid="_9bf18a9c-6d98-4bce-852e-d76f7cb4166b" name="phosphatidylglycerol_phosphate_phosphatase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9bf18a9c-6d98-4bce-852e-d76f7cb4166b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp180_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pg180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGAMT" metaid="_6703ddcc-d856-4bb4-81b8-3bee381864bc" name="phosphoglucosamine_mutase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003010</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 5.4.2.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6703ddcc-d856-4bb4-81b8-3bee381864bc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003010"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gam1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gam6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FORtppi" metaid="b520ec68-f923-44e9-8ec6-1d9682bc9a43" name="formate_transport_via_diffusion__cytoplasm_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b520ec68-f923-44e9-8ec6-1d9682bc9a43"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_for_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3PEPTabcpp" metaid="af26fc82-0b1d-48f8-9a47-605ace91c3ef" name="tripeptide__LalaDgluMdap__transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004070 ) OR ( XFCFBP8418_004550 ) OR ( XFCFBP8418_007680 ) OR ( XFCFBP8418_010500 ) OR ( XFCFBP8418_013240 ) OR ( XFCFBP8418_019450 ) OR ( XFCFBP8418_022120 ) OR ( XFCFBP8418_024570 ) OR ( XFCFBP8418_024670 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#af26fc82-0b1d-48f8-9a47-605ace91c3ef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019450"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024570"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013240"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdap_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdap_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SDPDS" metaid="_443aa0fb-d4f8-44c9-8b90-4dd6660bb936" name="succinyl_diaminopimelate_desuccinylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015120</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 3.5.1.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_443aa0fb-d4f8-44c9-8b90-4dd6660bb936"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015120"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sl26da_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_26dap_LL_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Kt2tex" metaid="_91524f00-6fa5-476e-a636-6f8fc06a942d" name="R_Kt2tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_91524f00-6fa5-476e-a636-6f8fc06a942d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_k_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_k_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EPStexXF" metaid="_3d1726d9-e87d-47e6-a3cc-04bcf384654e" name="R_EPStexXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021490</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d1726d9-e87d-47e6-a3cc-04bcf384654e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021490"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_EPS_XF_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_EPS_XF_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE160abcpp" metaid="_34f9a2fd-7e5b-4a2f-bf94-760e334fbeb7" name="phosphatidylethanolamine_transport_via_ABC_system__n_C16_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_34f9a2fd-7e5b-4a2f-bf94-760e334fbeb7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe160_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR140tipp" metaid="a83a9158-b98d-4ead-b7b5-a0fde97b8ed5" name="R_12DGR140tipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a83a9158-b98d-4ead-b7b5-a0fde97b8ed5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr140_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_12dgr140_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_so3_e" metaid="_3bb6c9dd-2ae2-4a45-ab92-96297b8b53e0" name="R_EX_so3_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3bb6c9dd-2ae2-4a45-ab92-96297b8b53e0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_so3_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THYMtex" metaid="_2e56144f-24f5-4667-80e1-80365102e1f7" name="R_THYMtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2e56144f-24f5-4667-80e1-80365102e1f7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thym_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_thym_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LPSS2XF" metaid="_3df2e4a4-fd35-4c2f-871d-5aa2f6284b02" name="R_LPSS2XF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001200</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3df2e4a4-fd35-4c2f-871d-5aa2f6284b02"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001200"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_core_kdo2lip6_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpxyl_c" stoichiometry="320"/> + <speciesReference constant="true" species="M_dtdprmn_c" stoichiometry="2188"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dtdp_c" stoichiometry="2188"/> + <speciesReference constant="true" species="M_OLPS_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="320"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACCOAL2r" metaid="_938a464e-1718-4a3f-b0e1-3d0889fd7471" name="R_ACCOAL2r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020630</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 6.2.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_938a464e-1718-4a3f-b0e1-3d0889fd7471"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ppa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP180abcpp" metaid="_2b89ef9a-099e-401d-bdd2-f1b9270863b4" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C18_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2b89ef9a-099e-401d-bdd2-f1b9270863b4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp180_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TREHpp" metaid="b82dba7e-27f5-4078-89c5-c8b9dcd5e769" name="alpha_alpha_trehalase__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.2.1.28</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b82dba7e-27f5-4078-89c5-c8b9dcd5e769"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.28"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tre_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glc_D_p" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TTDCEAtexi" metaid="_60d4b136-801a-4f2e-8c68-7d58c19960df" name="R_TTDCEAtexi" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_60d4b136-801a-4f2e-8c68-7d58c19960df"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ttdcea_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ttdcea_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KAS14" metaid="_7bdb0e75-55bc-4fe1-bf0d-6888bf0d0261" name="beta_ketoacyl_ACP_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Membrane_Lipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7bdb0e75-55bc-4fe1-bf0d-6888bf0d0261"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_actACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE2tex" metaid="f7661dec-e864-4895-a1c8-389b04f18a43" name="iron__II__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f7661dec-e864-4895-a1c8-389b04f18a43"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fe2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fe2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_AMOB" metaid="dcaacf85-ca34-4e84-9012-59026c2aa5a0" name="Sink_needed_to_allow_S_Adenosyl_4_methylthio_2_oxobutanoate_to_leave_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dcaacf85-ca34-4e84-9012-59026c2aa5a0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amob_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALLTNr" metaid="c5916cf1-d154-4738-be1f-27ed22e93f83" name="R_ALLTNr" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025380</p> + <p>SUBSYSTEM: Nitrogen_Metabolism</p> + <p>EC_NUMBER: 3.5.2.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c5916cf1-d154-4738-be1f-27ed22e93f83"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.2.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025380"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_alltn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_alltt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GALKr" metaid="_1b061ea9-269a-4250-b937-b58c2e495156" name="galactokinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1b061ea9-269a-4250-b937-b58c2e495156"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gal_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gal1p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KAS15" metaid="f7e312d1-3191-40ab-8df4-da52647f585d" name="beta_ketoacyl_ACP_synthase__2_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017940</p> + <p>SUBSYSTEM: Membrane_Lipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.180</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f7e312d1-3191-40ab-8df4-da52647f585d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.180"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017940"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_actACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MPTG" metaid="cdcd4102-ac04-4274-9c28-635253283c7b" name="murein_polymerizing_transglycosylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004700 AND XFCFBP8418_008630 ) OR ( XFCFBP8418_004700 AND XFCFBP8418_010420 ) OR ( XFCFBP8418_004700 AND XFCFBP8418_020460 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cdcd4102-ac04-4274-9c28-635253283c7b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020460"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010420"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uaagmda_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_udcpdp_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAGPT3" metaid="b0f5ce42-1b54-4bf5-850c-120ea691fa8a" name="UDP_N_acetylglucosamine_N_acetylmuramyl__pentapeptide_pyrophosphoryl_undecaprenol_N_acetylglucosamine_transferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011260</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.4.1.227</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b0f5ce42-1b54-4bf5-850c-120ea691fa8a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.1.227"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011260"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uagmda_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uacgam_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_uaagmda_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA181" metaid="ac6bbdd2-a452-49af-a324-bea473b59609" name="Phosphatidylserine_syntase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ac6bbdd2-a452-49af-a324-bea473b59609"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdodec11eg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ps181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS100" metaid="_7838ce1b-c744-4ef7-b2cc-c53afa1ac0a2" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C10_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7838ce1b-c744-4ef7-b2cc-c53afa1ac0a2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ocACP_c" stoichiometry="1"/> + <speciesReference 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<rdf:Description rdf:about="#e090a074-5339-4dc6-999e-1b5d6b1f9c99"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdodecg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ps180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAGDP" metaid="_7d0efe00-c44c-4c84-b6fb-e21815fc8e35" name="UDP_N_acetylglucosamine_diphosphorylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023670</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.23</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7d0efe00-c44c-4c84-b6fb-e21815fc8e35"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023670"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acgam1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uacgam_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACCITRH" metaid="beab3f41-ac76-4242-925b-87d9c7fed86a" name="R_ACCITRH" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025270</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: 3.5.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#beab3f41-ac76-4242-925b-87d9c7fed86a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025270"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_accitr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_citr_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NAt3_1" metaid="c13f60cb-78c9-45d6-8713-98dc58e03a49" name="R_NAt3_1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001440</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c13f60cb-78c9-45d6-8713-98dc58e03a49"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001440"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_na1_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_na1_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_chitin_polymer_e" metaid="_433c8e40-7bec-4183-8a78-017746677832" name="R_EX_chitin_polymer_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_433c8e40-7bec-4183-8a78-017746677832"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_chitin_polymer_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IPPMIb" metaid="f8f8e4fd-f967-4d82-860a-e95897d7c117" name="2_isopropylmalate_hydratase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021510 AND XFCFBP8418_021520</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.33</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f8f8e4fd-f967-4d82-860a-e95897d7c117"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.33"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021520"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021510"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2ippm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3c3hmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IPPMIa" metaid="d0487c14-22ef-4ec4-91f1-7a4b60b01854" name="3_isopropylmalate_dehydratase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021510 AND XFCFBP8418_021520</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.33</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d0487c14-22ef-4ec4-91f1-7a4b60b01854"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.33"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021520"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021510"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3c2hmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2ippm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADEt2rpp" metaid="_57ae459d-f59e-404a-867e-2fb6c241c5fb" name="adenine_transport_via_proton_symport__reversible___periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_57ae459d-f59e-404a-867e-2fb6c241c5fb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ade_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ade_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UREA" metaid="e53cacbc-1df2-45a8-87e3-888fc0cc1d8b" name="urease" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 3.5.1.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e53cacbc-1df2-45a8-87e3-888fc0cc1d8b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_urea_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG141abcpp" metaid="a6b6b0c3-0333-4a06-9d42-71915151005e" name="phosphatidylglycerol_transport_via_ABC_system__n_C14_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a6b6b0c3-0333-4a06-9d42-71915151005e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg141_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRPPS" metaid="c1d21756-841a-4c8f-a3ec-050b279a553c" name="phosphoribosylpyrophosphate_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012870</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 2.7.6.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c1d21756-841a-4c8f-a3ec-050b279a553c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.6.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT120" metaid="_3bfe3995-07a7-478d-afcb-33082a6a791a" name="1_tetradecanoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3bfe3995-07a7-478d-afcb-33082a6a791a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ddcaACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_1ddecg3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa120_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN181" metaid="b2ea9316-62d4-4d5f-8377-74f4f759ee1a" name="CDP_diacylglycerol_synthetase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.7.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b2ea9316-62d4-4d5f-8377-74f4f759ee1a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pa181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cdpdodec11eg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_X5PL3E" metaid="a132e0d4-615d-4cb2-80d5-b164796db653" name="R_X5PL3E" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a132e0d4-615d-4cb2-80d5-b164796db653"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_xu5p_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ru5p_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HPPK2" metaid="_47036610-be70-43b0-8ff1-24d147c86c79" name="6_hydroxymethyl_dihydropterin_pyrophosphokinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026570</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.6.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_47036610-be70-43b0-8ff1-24d147c86c79"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.6.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_6hmhpt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_6hmhptpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE180abcpp" metaid="ac3dee43-de4a-4448-9370-ecc7926b2fa4" name="phosphatidylethanolamine_transport_via_ABC_system__n_C18_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ac3dee43-de4a-4448-9370-ecc7926b2fa4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe180_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN180" metaid="fff29606-f162-4780-93f3-475b874c2f59" name="CDP_diacylglycerol_synthetase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.7.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fff29606-f162-4780-93f3-475b874c2f59"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdodecg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDCPDPtppi" metaid="_7a4c3dd9-4e12-466f-9bbc-3dbdb36e3b6d" name="R_UDCPDPtppi" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7a4c3dd9-4e12-466f-9bbc-3dbdb36e3b6d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udcpdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_udcpdp_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CD2tex" metaid="cee97fe3-a814-4f9d-b69d-6cdb53aabc3f" name="cadmium__Cd_2__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cee97fe3-a814-4f9d-b69d-6cdb53aabc3f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cd2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cd2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_rib_D_e" metaid="_20e83a14-6cb4-4e1b-9c32-bfa6604418b3" name="R_EX_rib_D_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_20e83a14-6cb4-4e1b-9c32-bfa6604418b3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_rib_D_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYCt" metaid="_5300ba34-0572-43a1-8e4b-7766ce41b435" name="R_GLYCt" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020710</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5300ba34-0572-43a1-8e4b-7766ce41b435"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_2THZPSN" metaid="_29ed181c-b67e-4396-8010-a03a6ca9a424" name="R_2THZPSN" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002960 AND XFCFBP8418_010710 AND XFCFBP8418_011380 AND XFCFBP8418_025440</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_29ed181c-b67e-4396-8010-a03a6ca9a424"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025440"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011380"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010710"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2c4mthzep_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAPabcpp" metaid="_4f146b55-b8fe-46c2-9a7a-bf18896903c7" name="R_DAPabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4f146b55-b8fe-46c2-9a7a-bf18896903c7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_26dap_M_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_26dap_M_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADEtex" metaid="cbfbcfdf-22e9-4308-ac89-9194911f2982" name="adenine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cbfbcfdf-22e9-4308-ac89-9194911f2982"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ade_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ade_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDCP2pp" metaid="_9b337c50-c719-42ec-b785-3c2dfe7f7cef" name="murein_D_D_carboxypeptidase__murein5px4px4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_018620 ) OR ( XFCFBP8418_020420 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.16.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9b337c50-c719-42ec-b785-3c2dfe7f7cef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.16.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_murein5px4px4p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_murein4px4px4p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSDabcpp" metaid="db962fa4-a856-44b9-a7a1-c3b019636173" name="R_CYSDabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#db962fa4-a856-44b9-a7a1-c3b019636173"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_D_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UACMAMO" metaid="b8359d44-4150-4ea9-ac92-65b3e076b3f6" name="UDP_N_acetyl_D_mannosamine_oxidoreductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023250</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.336</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b8359d44-4150-4ea9-ac92-65b3e076b3f6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.336"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_uacmam_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_uacmamu_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA120" metaid="c1911f53-b995-4962-844e-95575d086deb" name="Phosphatidylserine_syntase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c1911f53-b995-4962-844e-95575d086deb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdddecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ps120_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHRPL" metaid="_144ecfe1-5e21-461a-b6c7-237648271450" name="Chorismate_pyruvate_lyase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011490</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.3.40</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_144ecfe1-5e21-461a-b6c7-237648271450"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.3.40"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011490"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chor_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4hbz_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PItex" metaid="_021e930c-78bd-4508-9b10-628161093fbc" name="glycero_3_phospho_1_inositol_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_021e930c-78bd-4508-9b10-628161093fbc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g3pi_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3pi_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP181abcpp" metaid="_6910f36a-f866-44ec-963f-fb627be23d8e" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C18_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6910f36a-f866-44ec-963f-fb627be23d8e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp181_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_COBALT2tex" metaid="_24ace21b-f744-4cb5-8d4e-f117f90be7c5" name="cobalt__Co_2__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_24ace21b-f744-4cb5-8d4e-f117f90be7c5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cobalt2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cobalt2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CITt3tex" metaid="_7f0702f7-9a84-4a84-8655-b46f3695f187" name="R_CITt3tex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7f0702f7-9a84-4a84-8655-b46f3695f187"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cit_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cit_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTPCII2" metaid="_0b1ee868-2ca5-41ae-9660-fd42fbfd9a53" name="GTP_cyclohydrolase_II__25drapp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001170</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.5.4.25</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0b1ee868-2ca5-41ae-9660-fd42fbfd9a53"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001170"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_25drapp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYCL" metaid="_34a00b12-a3b3-4efe-bfd8-ea0b3648edf7" name="Glycine_Cleavage_System" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003740 AND XFCFBP8418_010560 AND XFCFBP8418_015760 AND XFCFBP8418_015770</p> + <p>SUBSYSTEM: Folate_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_34a00b12-a3b3-4efe-bfd8-ea0b3648edf7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003740"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015770"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010560"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015760"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HBZOPT" metaid="_859b4d9e-d4e9-48fa-8e34-605aeb6bd094" name="Hydroxybenzoate_octaprenyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014680</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.39</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_859b4d9e-d4e9-48fa-8e34-605aeb6bd094"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.39"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_octdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4hbz_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ophb_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDCP2Bpp" metaid="_5bc3d4c2-03ca-4d63-997a-b036b8201da4" name="murein_L_D_carboxypeptidase__murein4p3p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.17.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5bc3d4c2-03ca-4d63-997a-b036b8201da4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein4p3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein3p3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSabcpp" metaid="bc9f4672-0bd3-4db4-a8de-9293b57677df" name="L_cysteine_uptake_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bc9f4672-0bd3-4db4-a8de-9293b57677df"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NITL4" metaid="_4f226009-7c46-4f5c-bc20-7d6b71729812" name="nitrilase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004900</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: 3.5.5.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4f226009-7c46-4f5c-bc20-7d6b71729812"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.5.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pheacnit_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_BIOMASS_c" metaid="_4871584b-a1fb-4f05-bb6a-81011942db8a" name="R_DM_BIOMASS_c" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4871584b-a1fb-4f05-bb6a-81011942db8a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_BIOMASS_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAPDC" metaid="_3ae6ce1a-3c5a-4f21-8cfc-bcd76f8eef8d" name="diaminopimelate_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023860</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 4.1.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3ae6ce1a-3c5a-4f21-8cfc-bcd76f8eef8d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023860"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_26dap_M_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_lys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NITL5" metaid="_1307019b-a1b1-4773-8222-16cff7d40ca3" name="nitrilase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004900</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 3.5.5.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1307019b-a1b1-4773-8222-16cff7d40ca3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.5.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_bzonit_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_bz_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SO3abcpp" metaid="faf82e1a-1d8a-4788-bd9a-b45d27c4d584" name="R_SO3abcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004070 AND XFCFBP8418_004080 AND XFCFBP8418_004090 AND XFCFBP8418_004100</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#faf82e1a-1d8a-4788-bd9a-b45d27c4d584"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004100"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004080"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_so3_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_so3_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACM6PH" metaid="_63d3f650-18a4-4ff6-9e83-d579b44b3efb" name="N_acetylmuramate_6_phosphate_hydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 4.2.1.126</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_63d3f650-18a4-4ff6-9e83-d579b44b3efb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.126"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acmum6p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acgam6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lac_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DSBCGT" metaid="_96b1c983-3e7a-4693-9742-690df645eb69" name="DsbC_glutathione_thiotransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003390</p> + <p>SUBSYSTEM: Protein_disulfide_bond_transfer</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_96b1c983-3e7a-4693-9742-690df645eb69"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dsbcox_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_gthrd_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dsbcrd_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_gthox_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NMNN" metaid="_75340bb8-4f57-4630-b302-0e410854ea1a" name="R_NMNN" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.2.2.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_75340bb8-4f57-4630-b302-0e410854ea1a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.2.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nmn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ncam_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OGMEACPD" metaid="_0882e8db-1b85-40e8-8720-84d0c41ebce8" name="3_Oxo_glutaryl__ACP__methyl_ester_dehydratase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024890</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0882e8db-1b85-40e8-8720-84d0c41ebce8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hgmeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_egmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_k_e" metaid="_1c224853-b9bd-4b91-9c12-031dc274cf2b" name="R_EX_k_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1c224853-b9bd-4b91-9c12-031dc274cf2b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_k_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG161abcpp" metaid="_4eae385e-cccb-4a2c-bee1-6769794a402c" name="phosphatidylglycerol_transport_via_ABC_system__n_C16_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4eae385e-cccb-4a2c-bee1-6769794a402c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pg161_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RBKr" metaid="_28e4dd65-346a-4793-8d21-f58e2830dc0c" name="ribokinase_reversible" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_008660</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_28e4dd65-346a-4793-8d21-f58e2830dc0c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008660"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_rib_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MICITDr" metaid="_16a96a25-935d-4afd-b4ca-b2b918509ba0" name="2_methylisocitrate_dehydratase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025910</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 4.2.1.99</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_16a96a25-935d-4afd-b4ca-b2b918509ba0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.99"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2mcacn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_micit_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT140" metaid="_76c327a0-64f3-48af-bac2-21e08135d8f0" name="1_tetradecanoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_76c327a0-64f3-48af-bac2-21e08135d8f0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_myrsACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_1tdecg3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAMAGS" metaid="_0fe35e46-cae4-4900-aab6-9b60b92b21ee" name="UDP_N_acetylmuramoyl_L_alanyl_D_glutamate_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023840</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0fe35e46-cae4-4900-aab6-9b60b92b21ee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uama_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_uamag_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRS" metaid="_9ecfd703-3f9b-405b-ac8f-39bd0e0b73d5" name="threonine_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020360</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 4.2.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9ecfd703-3f9b-405b-ac8f-39bd0e0b73d5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phom_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thr_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DKGLUCK" metaid="_606ba1b7-d299-4516-800f-23ce787b4edb" name="2_deoxy_5_keto_D_gluconic_acid_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.92</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_606ba1b7-d299-4516-800f-23ce787b4edb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.92"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dkglc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_6pddgluc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT141" metaid="_4d748a4a-7b65-483b-a02a-dc430687525b" name="1_tetradec_7_enoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4d748a4a-7b65-483b-a02a-dc430687525b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_1tdec7eg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN160" metaid="_690fdbee-8b0f-4df9-94bf-84e7fa117bcb" name="CDP_diacylglycerol_synthetase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.7.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_690fdbee-8b0f-4df9-94bf-84e7fa117bcb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa160_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdhdecg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN161" metaid="a97705a7-3409-4ac6-88c4-d8201067e87f" name="CDP_diacylglycerol_synthetase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.7.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a97705a7-3409-4ac6-88c4-d8201067e87f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa161_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdhdec9eg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PMDPHT" metaid="_63c64b55-d57b-433b-b37b-8926231124e5" name="pyrimidine_phosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005170</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_63c64b55-d57b-433b-b37b-8926231124e5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005170"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_5aprbu_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4r5au_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S2FE2SS2" metaid="_79f20238-a43c-4471-ba5e-19db00879552" name="R_S2FE2SS2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950 AND XFCFBP8418_002960 AND XFCFBP8418_025330</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_79f20238-a43c-4471-ba5e-19db00879552"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufbcd_2fe2s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufsesh_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_fe2_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="7"/> + <speciesReference constant="true" species="M_sufse_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_sufbcd_2fe2s2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDCP1App" metaid="cae4d2be-3ee7-4bb6-baa9-097d9e2efd8c" name="murein_L_D_carboxypeptidase__murein5px4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.17.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cae4d2be-3ee7-4bb6-baa9-097d9e2efd8c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5px4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_alaala_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_murein3px4p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HCO3tex" metaid="ed627a8a-6b03-4bec-9866-917c9efefb6a" name="R_HCO3tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ed627a8a-6b03-4bec-9866-917c9efefb6a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hco3_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hco3_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_URCN" metaid="e26a7dfb-3e73-45e3-9850-e0feb8da90ae" name="urocanase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.49</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e26a7dfb-3e73-45e3-9850-e0feb8da90ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.49"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_urcan_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4izp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HEMEOS" metaid="_05e2bd9b-e836-41a3-b965-318c66d29860" name="Heme_O_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003980</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.141</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_05e2bd9b-e836-41a3-b965-318c66d29860"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.141"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003980"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_frdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pheme_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hemeO_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HCO3abcpp" metaid="fc79df28-db6d-4647-9a25-7e5d039f0e34" name="R_HCO3abcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007690</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fc79df28-db6d-4647-9a25-7e5d039f0e34"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007690"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + 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xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_35d3bd35-ff20-4233-ac07-f7524dd63794"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acorn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acg5sa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHPS2" metaid="_0910cfff-a0d6-449d-a8a9-69d6689a0900" name="dihydropteroate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014930</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0910cfff-a0d6-449d-a8a9-69d6689a0900"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4abz_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_6hmhptpp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhpt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL100t2pp" metaid="d1eae919-daa3-4d78-a329-cb01833e7d7d" name="fatty_acid_CoA_ligase__decanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d1eae919-daa3-4d78-a329-cb01833e7d7d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dca_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dcacoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NMNtex" metaid="d126276d-34ac-45a1-8be7-c3482f615ad7" name="R_NMNtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d126276d-34ac-45a1-8be7-c3482f615ad7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nmn_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nmn_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_O2tpp" metaid="_97b68843-fbfc-462b-9b38-b960c6232da5" name="o2_transport_via_diffusion__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_97b68843-fbfc-462b-9b38-b960c6232da5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_o2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR141tipp" metaid="ffc643cc-a0d4-448a-a6ec-b441b82305be" name="R_12DGR141tipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ffc643cc-a0d4-448a-a6ec-b441b82305be"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr141_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_12dgr141_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SADT2" metaid="_5aa01bac-402d-4015-8fae-d2de0d40a3af" name="Sulfate_adenyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002680 AND XFCFBP8418_002690</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 2.7.7.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5aa01bac-402d-4015-8fae-d2de0d40a3af"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002690"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_so4_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_aps_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASP1DC" metaid="_3dad8860-fadb-4d45-b78f-ea6623501438" name="aspartate_1_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026540</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3dad8860-fadb-4d45-b78f-ea6623501438"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_B_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA141" metaid="_96d1e5e8-7505-4e20-bb88-8de38ff45115" name="Phosphatidylserine_syntase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_96d1e5e8-7505-4e20-bb88-8de38ff45115"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdtdec7eg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ps141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OGMEACPS" metaid="_035776d4-ce25-4406-adbc-5d614ecb3297" name="3_Oxo_glutaryl__ACP__methyl_ester_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017940</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_035776d4-ce25-4406-adbc-5d614ecb3297"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017940"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malcoame_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ogmeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA140" metaid="b6be7b5c-9ee1-4d01-8f46-585cebd1a3b9" name="Phosphatidylserine_syntase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b6be7b5c-9ee1-4d01-8f46-585cebd1a3b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdtdecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ps140_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLCtex" metaid="_42438596-6d57-4484-8c61-7ae6ea285615" name="glucose_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_42438596-6d57-4484-8c61-7ae6ea285615"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glc_D_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glc_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CMPN" metaid="f1e94955-c06e-4682-afdf-337ba30a04b0" name="R_CMPN" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007150</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.2.2.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f1e94955-c06e-4682-afdf-337ba30a04b0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007150"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_csn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OGMEACPR" metaid="ef87a881-74aa-4665-8b74-7390b15be581" name="3_Oxo_glutaryl__ACP__methyl_ester_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ef87a881-74aa-4665-8b74-7390b15be581"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ogmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hgmeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NACODA" metaid="_3f26c8e9-8f85-4cc5-a178-ac9e0dc1c6f9" name="N_acetylornithine_deacetylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025270</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3f26c8e9-8f85-4cc5-a178-ac9e0dc1c6f9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025270"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acg5sa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu5sa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NNATr" metaid="_2adc3af3-4199-4fbf-be6c-96b4c4c930f7" name="nicotinate_nucleotide_adenylyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019740</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.7.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2adc3af3-4199-4fbf-be6c-96b4c4c930f7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019740"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nicrnt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dnad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LGTHL" metaid="fcef5802-3d5d-46f2-a6ba-453e430b6219" name="lactoylglutathione_lyase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003630</p> + <p>SUBSYSTEM: Methylglyoxal_Metabolism</p> + <p>EC_NUMBER: 4.4.1.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fcef5802-3d5d-46f2-a6ba-453e430b6219"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.4.1.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mthgxl_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_lgt_S_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_tre_e" metaid="_2b25f65c-97e2-404d-901a-2f351b852d79" name="R_EX_tre_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2b25f65c-97e2-404d-901a-2f351b852d79"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_tre_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP160pp" metaid="a1b419c0-81da-4e40-a057-a1e9407e11f6" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a1b419c0-81da-4e40-a057-a1e9407e11f6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp160_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg160_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYAT" metaid="e9dc1a75-b6d0-406f-afa0-5fbbc5757598" name="glycine_C_acetyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004000</p> + <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> + <p>EC_NUMBER: 2.3.1.29</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e9dc1a75-b6d0-406f-afa0-5fbbc5757598"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.29"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004000"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2aobut_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OPMEACPR" metaid="_38311acc-fe0e-4fe8-b291-e50c8b6cd311" name="3_Oxo_pimeloyl__ACP__methyl_ester_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_38311acc-fe0e-4fe8-b291-e50c8b6cd311"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_opmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hpmeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OPMEACPS" metaid="de252ec5-5a95-4339-95de-75bd74c748d6" name="3_Oxo_pimeloyl__ACP__methyl_ester_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#de252ec5-5a95-4339-95de-75bd74c748d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gmeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_opmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NMNt7pp" metaid="d24df04a-1053-45b4-9d5b-1b2bb443830c" name="R_NMNt7pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.2.2.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d24df04a-1053-45b4-9d5b-1b2bb443830c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.2.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nmn_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ncam_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROT_pe_LesA" metaid="_5357bd7d-8ed9-4a47-9785-f9800b06ae3a" name="R_PROT_pe_LesA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002410 AND XFCFBP8418_002430 AND XFCFBP8418_002450 AND XFCFBP8418_002490 AND XFCFBP8418_002510 AND XFCFBP8418_007090 AND XFCFBP8418_007140 AND XFCFBP8418_008580 AND XFCFBP8418_009650 AND XFCFBP8418_014460</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5357bd7d-8ed9-4a47-9785-f9800b06ae3a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002490"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002430"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008580"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002410"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007140"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009650"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014460"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002450"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="601"/> + <speciesReference constant="true" species="M_LesA_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="601"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_LesA_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="601"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="601"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THIORDXi" metaid="_0cd67b67-db31-4c16-81ee-fb0e0ac0b203" name="hydrogen_peroxide_reductase__thioredoxin_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_009690 ) OR ( XFCFBP8418_009690 AND XFCFBP8418_013260 ) OR ( XFCFBP8418_016490 ) OR ( XFCFBP8418_027830 )</p> + <p>SUBSYSTEM: Superoxide_radicals_degradation</p> + <p>EC_NUMBER: 1.11.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0cd67b67-db31-4c16-81ee-fb0e0ac0b203"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.11.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009690"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027830"/> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + </fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016490"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SLNTtpp" metaid="c6a70f8d-7458-4027-a984-349491373917" name="selenite_transport_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004070 AND XFCFBP8418_004080 AND XFCFBP8418_004090</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c6a70f8d-7458-4027-a984-349491373917"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004080"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_slnt_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_slnt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN141" metaid="d26ad3a6-bebe-42cd-9237-035ba1b3eed7" name="CDP_diacylglycerol_synthetase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.7.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d26ad3a6-bebe-42cd-9237-035ba1b3eed7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pa141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdtdec7eg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGTRS" metaid="_498f98ae-e4c7-42d3-8f54-d49e92362ece" name="Arginyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015410</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_498f98ae-e4c7-42d3-8f54-d49e92362ece"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015410"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaarg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_argtrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_gam_e" metaid="_5ff50da0-3067-4ccc-bc06-431e0e095786" name="R_EX_gam_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ff50da0-3067-4ccc-bc06-431e0e095786"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_gam_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN140" metaid="_28c0f073-5fec-4c04-8491-4d0cd1fc0982" name="CDP_diacylglycerol_synthetase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.7.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_28c0f073-5fec-4c04-8491-4d0cd1fc0982"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pa140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cdpdtdecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHNCOAT" metaid="_172f23b0-3e36-4ec7-a8f7-4877f049e313" name="R_DHNCOAT" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000310 ) OR ( XFCFBP8418_016380 ) OR ( XFCFBP8418_027720 )</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_172f23b0-3e36-4ec7-a8f7-4877f049e313"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000310"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016380"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_14dhncoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dhna_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OCDCAtexi" metaid="_83ec1012-b479-41ea-9b1c-741d6ab0c55b" name="R_OCDCAtexi" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_83ec1012-b479-41ea-9b1c-741d6ab0c55b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ocdca_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ocdca_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INOSTt2pp" metaid="_60d617c5-eb84-43d2-a135-e69aea81b345" name="myo_Inositol_transport_in_via_proton_symport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_60d617c5-eb84-43d2-a135-e69aea81b345"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_inost_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_inost_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INDOLEtex" metaid="_3d815093-2372-46d7-b732-629120c99cb7" name="R_INDOLEtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d815093-2372-46d7-b732-629120c99cb7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_indole_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_indole_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CMPA_1" metaid="_3bf975a4-4ad7-4ad8-9f6b-e7e926c264a4" name="R_CMPA_1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: 3.5.1.53</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3bf975a4-4ad7-4ad8-9f6b-e7e926c264a4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.53"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_Ncbmpts_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ptrc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TTDCAtex" metaid="f68853a7-bb81-4117-8b8a-d5b23354fe12" name="Tetradecanoate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f68853a7-bb81-4117-8b8a-d5b23354fe12"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ttdca_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ttdca_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BPNT" metaid="_0bd2463b-6ba8-4599-8cc9-37d09a118595" name="3__5__bisphosphate_nucleotidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015810</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 3.1.3.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0bd2463b-6ba8-4599-8cc9-37d09a118595"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pap_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CBPS" metaid="d26f35f6-2ec3-4773-9be0-0c2ebea9bb7e" name="carbamoyl_phosphate_synthase__glutamine_hydrolysing_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023960 AND XFCFBP8418_023970</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 6.3.5.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d26f35f6-2ec3-4773-9be0-0c2ebea9bb7e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.5.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023970"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023960"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hco3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_cbp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALCD2y" metaid="b889036a-9533-4a29-bce6-e97aa68065d0" name="alcohol_dehydrogenase__ethanol_nadp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021600</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b889036a-9533-4a29-bce6-e97aa68065d0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021600"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_etoh_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acald_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EPMEACPR" metaid="_0f96bf08-f967-48f3-93bf-7dce412104f3" name="Enoylpimeloyl__ACP__methyl_ester_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.3.1.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0f96bf08-f967-48f3-93bf-7dce412104f3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_epmeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pmeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOBDabcpp" metaid="a3c26352-4e70-49d6-bdbe-251095bf2931" name="molybdate_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004070 AND XFCFBP8418_004080 AND XFCFBP8418_004090 AND XFCFBP8418_004100</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a3c26352-4e70-49d6-bdbe-251095bf2931"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004100"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004080"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mobd_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mobd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UMPK" metaid="_843f2051-31c6-49f8-9274-c50f7feaa5f5" name="UMP_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004870 ) OR ( XFCFBP8418_024760 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_843f2051-31c6-49f8-9274-c50f7feaa5f5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004870"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024760"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_dextrin_e" metaid="_0d547eb7-32fb-4cfb-a882-4ca7f6e35a8d" name="R_EX_dextrin_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0d547eb7-32fb-4cfb-a882-4ca7f6e35a8d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_dextrin_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAPtex" metaid="_95c3d2bf-26e3-4528-b8d7-220421fe20b3" name="R_DAPtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_95c3d2bf-26e3-4528-b8d7-220421fe20b3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_26dap_M_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_26dap_M_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OPMEACPD" metaid="_5bb5cc38-4c7b-4c7b-a903-879afa6edeb4" name="3_Oxo_pimeloyl__ACP__methyl_ester_dehydratase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024890</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5bb5cc38-4c7b-4c7b-a903-879afa6edeb4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hpmeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_epmeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSr" metaid="_52a59611-b4b8-491c-8a81-77a799440f58" name="methionine_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020760</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 2.1.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_52a59611-b4b8-491c-8a81-77a799440f58"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020760"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hcys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_5mthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_F2NAPPUDC" metaid="_32a86585-5561-443d-b82a-af62daf8dd19" name="R_F2NAPPUDC" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004820</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_32a86585-5561-443d-b82a-af62daf8dd19"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udcpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpacfuc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_f2Nappudp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MPTSS" metaid="f93c4e56-1970-4ac8-9a61-bdc9fb0932a5" name="molybdopterin_synthase_sulfurylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007180</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.80</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f93c4e56-1970-4ac8-9a61-bdc9fb0932a5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.80"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_moadcoo_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_moadamp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGabcpp" metaid="_1afcd294-0571-4975-87e2-dc8f443379e6" name="L_arginine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.21</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1afcd294-0571-4975-87e2-dc8f443379e6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.21"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_arg_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2tex" metaid="_39f5e57f-2b12-494f-bd68-9ba86f019199" name="R_H2tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_39f5e57f-2b12-494f-bd68-9ba86f019199"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_2THZPSN2" metaid="cd8edc97-7777-49ff-8ec2-cdafe1b21523" name="R_2THZPSN2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002960 AND XFCFBP8418_010710 AND XFCFBP8418_011380 AND XFCFBP8418_025440</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cd8edc97-7777-49ff-8ec2-cdafe1b21523"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025440"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011380"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010710"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2c4mthzep_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTRLASE3" metaid="_134e14c8-23d7-4975-8993-627cad8b0328" name="nitrilase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004900</p> + <p>SUBSYSTEM: Nitrile_degradation</p> + <p>EC_NUMBER: 3.5.5.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_134e14c8-23d7-4975-8993-627cad8b0328"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.5.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_acybut_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUMt2_2tex" metaid="e84f88d3-ed67-4fe6-8c89-1d05d753a009" name="R_FUMt2_2tex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e84f88d3-ed67-4fe6-8c89-1d05d753a009"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fum_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fum_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTRLASE2" metaid="a994ee3a-5c18-4224-b252-d544d7721451" name="nitrilase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004900</p> + <p>SUBSYSTEM: Nitrile_degradation</p> + <p>EC_NUMBER: 3.5.5.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a994ee3a-5c18-4224-b252-d544d7721451"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.5.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_aprop_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ILETA" metaid="_4faf7029-4b9a-45ef-995a-dd6b6cd7daa0" name="isoleucine_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001240</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.42</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4faf7029-4b9a-45ef-995a-dd6b6cd7daa0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.42"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ile_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3mop_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUN" metaid="_6d5db020-42d2-4c67-b09a-71d599af89fd" name="glutaminase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026750</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: 3.5.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6d5db020-42d2-4c67-b09a-71d599af89fd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUR" metaid="ecfb0ef4-ec37-41aa-9ffd-d6a6e4f2054c" name="glutamate_racemase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ecfb0ef4-ec37-41aa-9ffd-d6a6e4f2054c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE3abcpp" metaid="d36a7413-0b8c-4b38-abc3-820c39ccf4ae" name="R_FE3abcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: 3.6.3.30</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d36a7413-0b8c-4b38-abc3-820c39ccf4ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.30"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe3_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe3_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN120" metaid="_0ba1e8dc-1e0d-4dc0-ad46-1e4fdd620792" name="CDP_diacylglycerol_synthetase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.7.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0ba1e8dc-1e0d-4dc0-ad46-1e4fdd620792"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa120_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cdpdddecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NACtpp" metaid="ae1e97f9-8617-497c-ae71-24585acd3ce5" name="R_NACtpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ae1e97f9-8617-497c-ae71-24585acd3ce5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nac_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nac_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LIPOCT" metaid="bdab0b04-e8cb-4bab-8f54-163eae6288b3" name="Lipoyl_octanoyl__transferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022350</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bdab0b04-e8cb-4bab-8f54-163eae6288b3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022350"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ocACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_octapb_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SHCHF" metaid="d4619ccf-80f9-4cad-96ea-bba4caee5f43" name="R_SHCHF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010970</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.99.1.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d4619ccf-80f9-4cad-96ea-bba4caee5f43"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.99.1.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010970"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_scl_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_sheme_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_fe3_e" metaid="d2a448eb-c902-4e33-ab88-6e80ede7832f" name="R_EX_fe3_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d2a448eb-c902-4e33-ab88-6e80ede7832f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_fe3_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ILEabcpp" metaid="_1db2a1a5-3ad1-49be-b2f5-9426939530b0" name="L_isoleucine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1db2a1a5-3ad1-49be-b2f5-9426939530b0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ile_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ile_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NADDP" metaid="_3755c964-c650-40a9-a331-572a12deb4d8" name="R_NADDP" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012090</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.6.1.22</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3755c964-c650-40a9-a331-572a12deb4d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.22"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012090"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_nmn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDCPDPS" metaid="dcba839d-2519-4cb8-9aab-1b45abfea0b7" name="Undecaprenyl_diphosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024830</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.31</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dcba839d-2519-4cb8-9aab-1b45abfea0b7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024830"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_frdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ipdp_c" stoichiometry="8"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_udcpdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="8"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NMNATr" metaid="_1536dc85-983a-4dc5-a7b2-1693baf7ee7f" name="nicotinamide_nucleotide_adenylyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019740</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1536dc85-983a-4dc5-a7b2-1693baf7ee7f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019740"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nmn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYALDtpp" metaid="_3d01642d-709a-4a12-9b8e-5c4c7b9143ec" name="R_GLYALDtpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020710</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d01642d-709a-4a12-9b8e-5c4c7b9143ec"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyald_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyald_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CS" metaid="_23d90c22-f4bc-4bde-8c29-ab8d669a9aed" name="citrate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002320</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 2.3.3.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_23d90c22-f4bc-4bde-8c29-ab8d669a9aed"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.3.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002320"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cit_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GDDMR" metaid="c8ea31f2-689b-402d-8528-16afb300f073" name="R_GDDMR" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006450</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.1.1.281</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c8ea31f2-689b-402d-8528-16afb300f073"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.281"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006450"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp6dm_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp4d6dm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ABTA" metaid="_3feec985-0dfd-47db-890f-ffdb7d9c4a21" name="R_ABTA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003360</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.6.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3feec985-0dfd-47db-890f-ffdb7d9c4a21"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4abut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sucsal_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUM" metaid="_01f69675-9e9e-403f-a07a-1fbb9a7f1344" name="fumarase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_002100 ) OR ( XFCFBP8418_016890 )</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 4.2.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01f69675-9e9e-403f-a07a-1fbb9a7f1344"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002100"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016890"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mal_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TYRTRS" metaid="_68f26176-267c-4299-8ae1-e8ed7005c387" name="tyrosyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015580</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_68f26176-267c-4299-8ae1-e8ed7005c387"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015580"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tyr_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnatyr_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tyrtrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACGAMABCt" metaid="db998b9d-c4f8-49ab-bc81-335ce9c0c4e3" name="R_ACGAMABCt" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#db998b9d-c4f8-49ab-bc81-335ce9c0c4e3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acgam_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acgam6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHPPDA2" metaid="_397adf45-3110-49b9-ae89-2c10c38bdc95" name="R_DHPPDA2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009790</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.5.4.26</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_397adf45-3110-49b9-ae89-2c10c38bdc95"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.26"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009790"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_25drapp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5apru_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADNK1" metaid="_70c5194d-2459-4c73-baaa-52095bab44ce" name="R_ADNK1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026070</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_70c5194d-2459-4c73-baaa-52095bab44ce"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS180pp" metaid="_41e3f736-7f18-4ed2-882d-078fcd073cf4" name="cardiolipin_synthase__periplasmic__n_C18_0_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_41e3f736-7f18-4ed2-882d-078fcd073cf4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pg180_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_clpn180_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP161abcpp" metaid="_6b4db725-0f46-45cd-91a7-ff5e26647473" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C16_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6b4db725-0f46-45cd-91a7-ff5e26647473"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp161_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS180" metaid="_8292c076-d98f-4659-abf8-5aea04f19a2e" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8292c076-d98f-4659-abf8-5aea04f19a2e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_palmACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3ooctdACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR4b" metaid="_1fce80bd-1ea0-4dbf-923e-87f0e18742da" name="R_RNDR4b" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013020 AND XFCFBP8418_023110 AND XFCFBP8418_023120</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1fce80bd-1ea0-4dbf-923e-87f0e18742da"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013020"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dudp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS181" metaid="f6607936-32c2-4e46-ad0a-30d824da2f35" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.179</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f6607936-32c2-4e46-ad0a-30d824da2f35"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.179"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hdeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ocvac11eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_inost_e" metaid="_0aedf89d-8a96-4cfa-92a3-6eb5f2053277" name="R_EX_inost_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0aedf89d-8a96-4cfa-92a3-6eb5f2053277"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_inost_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MAN6PI" metaid="_7dbe2ce6-db32-4f7e-bc6e-b3f2ddf43e5c" name="mannose_6_phosphate_isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026210</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 5.3.1.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7dbe2ce6-db32-4f7e-bc6e-b3f2ddf43e5c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026210"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_man6p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHAPT" metaid="_5dde2c9f-2b10-4b58-a131-233066c88570" name="R_DHAPT" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.121</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5dde2c9f-2b10-4b58-a131-233066c88570"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.121"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dha_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASADH" metaid="_5b379ec5-d580-42e2-b908-5cb20646ef45" name="R_ASADH" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003880</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 1.2.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5b379ec5-d580-42e2-b908-5cb20646ef45"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003880"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4pasp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_aspsa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MALDt2_2tex" metaid="f545ce1c-e54a-4c5b-8a49-c502345c9345" name="R_MALDt2_2tex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f545ce1c-e54a-4c5b-8a49-c502345c9345"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mal_D_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mal_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MALCOAMT" metaid="_4f14dd11-4111-46fe-b081-74f31fa49336" name="Malonyl_CoA_methyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000200 ) OR ( XFCFBP8418_001720 )</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.1.1.197</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4f14dd11-4111-46fe-b081-74f31fa49336"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.197"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000200"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_malcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ahcys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malcoame_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PGtex" metaid="_44c99b45-18a0-45ae-8d1d-c1b1c42b96c8" name="glycerophoglycerol_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_44c99b45-18a0-45ae-8d1d-c1b1c42b96c8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g3pg_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3pg_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DPR" metaid="_9a68ad4c-d4cd-4ce0-9f53-966e0013be3e" name="2_dehydropantoate_2_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017890</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.169</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a68ad4c-d4cd-4ce0-9f53-966e0013be3e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.169"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2dhp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pant_R_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLU5K" metaid="b8b1436a-57d8-458d-b9e0-94f26f27e260" name="glutamate_5_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025230</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 2.7.2.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b8b1436a-57d8-458d-b9e0-94f26f27e260"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.2.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025230"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AIRC2r" metaid="_6645cf46-919f-486a-9823-6781d9cfbbb6" name="phosphoribosylaminoimidazole_carboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013030</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 6.3.4.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6645cf46-919f-486a-9823-6781d9cfbbb6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_air_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hco3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5caiz_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ATHRDHr" metaid="_7e3a7053-fb8e-4b36-b54f-dd6fdb04058e" name="R_ATHRDHr" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015390</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.381</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7e3a7053-fb8e-4b36-b54f-dd6fdb04058e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.381"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_athr_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2aobut_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROt2rpp" metaid="_9bd00da5-d6af-4066-9645-33a888f9bbcd" name="L_proline_reversible_transport_via_proton_symport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9bd00da5-d6af-4066-9645-33a888f9bbcd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pro_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GHMT2r" metaid="da8d0d51-de92-452f-a95b-e3db2099f067" name="glycine_hydroxymethyltransferase__reversible" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> + <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> + <p>EC_NUMBER: 2.1.2.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#da8d0d51-de92-452f-a95b-e3db2099f067"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_QUIN2tpp" metaid="d71079b3-0b61-482c-80db-53375e0430ac" name="R_QUIN2tpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d71079b3-0b61-482c-80db-53375e0430ac"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_quin_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_quin_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SHSL1r" metaid="f530f847-db22-43d3-9d16-6d7eac17354a" name="R_SHSL1r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010590</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 2.5.1.48</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f530f847-db22-43d3-9d16-6d7eac17354a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.48"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_suchms_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cyst_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RBFK" metaid="_0821679d-8246-41fd-bba1-6ce3a40d8b18" name="riboflavin_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004690</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.1.26</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0821679d-8246-41fd-bba1-6ce3a40d8b18"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.26"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004690"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ribflv_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fmn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR3b" metaid="_43142d0a-9eef-49e5-b7f0-e37c0a16a8eb" name="R_RNDR3b" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013020 AND XFCFBP8418_023110 AND XFCFBP8418_023120</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_43142d0a-9eef-49e5-b7f0-e37c0a16a8eb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013020"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dcdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TMPPP" metaid="_0ec55137-23f5-4f3f-9112-d6bd2eafdea0" name="thiamine_phosphate_diphosphorylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_008540</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0ec55137-23f5-4f3f-9112-d6bd2eafdea0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2mahmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4mpetz_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thmmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DSBAO1" metaid="_5c0b1182-02bb-4720-beb4-03400b842a82" name="DsbA_protein_reoxidation_reaction__aerobic_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_003290 AND XFCFBP8418_008810 ) OR ( XFCFBP8418_003300 AND XFCFBP8418_008810 )</p> + <p>SUBSYSTEM: Protein_disulfide_bond_transfer</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5c0b1182-02bb-4720-beb4-03400b842a82"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008810"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003300"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008810"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003290"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbard_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbaox_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_4abut_e" metaid="_0a49bcd6-eff9-41d0-bd80-27d644965d83" name="R_EX_4abut_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0a49bcd6-eff9-41d0-bd80-27d644965d83"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_4abut_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FCLT" metaid="_8eb1d4bb-b1c1-44fb-81f9-ebed8b74488d" name="Ferrochelatase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006790</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.99.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8eb1d4bb-b1c1-44fb-81f9-ebed8b74488d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.99.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006790"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ppp9_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pheme_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HSK" metaid="_9940ff69-7b6c-4680-8a6c-988340fcd018" name="homoserine_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020370</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 2.7.1.39</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9940ff69-7b6c-4680-8a6c-988340fcd018"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.39"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020370"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hom_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_phom_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRAr" metaid="_76b3b033-d489-453c-bb92-fa7bfd1b43ff" name="Threonine_Aldolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 4.1.2.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_76b3b033-d489-453c-bb92-fa7bfd1b43ff"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thr_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acald_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADSL2r" metaid="dacd9565-cac8-43a7-b468-bae13439ab04" name="adenylosuccinate_lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002120</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 4.3.2.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dacd9565-cac8-43a7-b468-bae13439ab04"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.2.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002120"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_25aics_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_aicar_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PGabcpp" metaid="_44db3cb0-b678-4dc7-81ca-28d8e338ea64" name="sn_glycerol_3_phosphoglycerol_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_44db3cb0-b678-4dc7-81ca-28d8e338ea64"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3pg_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3pg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_O16A4COLIPAabctex" metaid="b12703fa-9481-407c-82ac-92105fd00866" name="R_O16A4COLIPAabctex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003500 AND XFCFBP8418_003510 AND XFCFBP8418_015320 AND XFCFBP8418_015330</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b12703fa-9481-407c-82ac-92105fd00866"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015320"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_OLPS_XF_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_OLPS_XF_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUtex" metaid="cc285548-4649-4d25-9a09-e6c71c2f1135" name="L_glutamate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cc285548-4649-4d25-9a09-e6c71c2f1135"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROT_cp_LesA" metaid="c7216a2f-75d2-418a-8595-9227e9080418" name="R_PROT_cp_LesA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002410 AND XFCFBP8418_002430 AND XFCFBP8418_002450 AND XFCFBP8418_002490 AND XFCFBP8418_002510 AND XFCFBP8418_007090 AND XFCFBP8418_007140 AND XFCFBP8418_008580 AND XFCFBP8418_009650 AND XFCFBP8418_014460</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c7216a2f-75d2-418a-8595-9227e9080418"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002490"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002430"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008580"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002410"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007140"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009650"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014460"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002450"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="601"/> + <speciesReference constant="true" species="M_LesA_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="601"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_c" stoichiometry="601"/> + <speciesReference constant="true" species="M_LesA_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="601"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR2b" metaid="_6e54d580-b45a-4013-a358-079027932d74" name="R_RNDR2b" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013020 AND XFCFBP8418_023110 AND XFCFBP8418_023120</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6e54d580-b45a-4013-a358-079027932d74"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013020"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dgdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_pyr_e" metaid="_8633901e-e762-4406-8ebb-b58c3f6c6f92" name="R_EX_pyr_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8633901e-e762-4406-8ebb-b58c3f6c6f92"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS160" metaid="a3fabda9-649f-4736-b7fa-28241c5853c0" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a3fabda9-649f-4736-b7fa-28241c5853c0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_myrsACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3opalmACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DSERDHr" metaid="_59ad4187-4ef2-4171-90b9-234bbc54fcee" name="R_DSERDHr" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015390</p> + <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.276</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_59ad4187-4ef2-4171-90b9-234bbc54fcee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.276"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2amsa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS161" metaid="d9fd717c-9da8-4cd7-b257-1e48b23ee048" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d9fd717c-9da8-4cd7-b257-1e48b23ee048"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3ocpalm9eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRATPP" metaid="_7bab06b3-5f10-46bc-8921-b52ca4efaa68" name="phosphoribosyl_ATP_pyrophosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020260</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 3.6.1.31</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7bab06b3-5f10-46bc-8921-b52ca4efaa68"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020260"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prbatp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prbamp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_URAt2pp" metaid="c689780f-6291-4a49-8606-befea4ef9449" name="R_URAt2pp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c689780f-6291-4a49-8606-befea4ef9449"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ura_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ura_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GP4GH" metaid="_537a438f-16d9-4cc6-9519-85c84364ff69" name="Gp4G_hydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019500</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_537a438f-16d9-4cc6-9519-85c84364ff69"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019500"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gp4g_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPK2r" metaid="_0bae4037-a747-4a55-97f0-2d9c35812403" name="polyphosphate_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012370</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 2.7.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0bae4037-a747-4a55-97f0-2d9c35812403"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012370"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAPE" metaid="_29a03fd9-aefc-4f79-b029-e69b46c520e5" name="diaminopimelate_epimerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002870</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 5.1.1.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_29a03fd9-aefc-4f79-b029-e69b46c520e5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_26dap_LL_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_26dap_M_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OAAtex" metaid="b07ccf1c-e5f0-4e1a-aec2-8e9ad696935f" name="R_OAAtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b07ccf1c-e5f0-4e1a-aec2-8e9ad696935f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_oaa_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_oaa_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ORPT" metaid="f9ef6e07-c2be-48b1-a3a1-3bf83ffd1efd" name="orotate_phosphoribosyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015470</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 2.4.2.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f9ef6e07-c2be-48b1-a3a1-3bf83ffd1efd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015470"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_orot5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_orot_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROtex" metaid="_9d708f07-47a2-4900-8f78-559008fb3911" name="L_proline_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9d708f07-47a2-4900-8f78-559008fb3911"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pro_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pro_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE120abcpp" metaid="_3a7b34bd-9273-4389-9723-727fa652ce82" name="phosphatidylethanolamine_transport_via_ABC_system__n_C12_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3a7b34bd-9273-4389-9723-727fa652ce82"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe120_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe120_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP180pp" metaid="c35596c4-e315-4b33-a091-de5a0f92068b" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c35596c4-e315-4b33-a091-de5a0f92068b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp180_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg180_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_mobd_e" metaid="_20930448-937b-4cf1-ab3f-ecc08d62f091" name="R_EX_mobd_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_20930448-937b-4cf1-ab3f-ecc08d62f091"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_mobd_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR1b" metaid="b9cad4e8-4536-4eec-8c2e-6d989419fe0e" name="R_RNDR1b" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013020 AND XFCFBP8418_023110 AND XFCFBP8418_023120</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b9cad4e8-4536-4eec-8c2e-6d989419fe0e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013020"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UPPDC1" metaid="bbf72941-8f9c-476d-88dc-ce5e8f3cc3f2" name="uroporphyrinogen_decarboxylase__uroporphyrinogen_III_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004180</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.1.37</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bbf72941-8f9c-476d-88dc-ce5e8f3cc3f2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.37"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uppg3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="4"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cpppg3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="4"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PYRt2rpp" metaid="_67a005e1-64b1-49b1-a087-618c55348f69" name="pyruvate_reversible_transport_via_proton_symport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_67a005e1-64b1-49b1-a087-618c55348f69"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_T2DECAI" metaid="_5f6dd7c4-e043-4833-ae2f-ccd001b942a8" name="trans_2_decenoyl_ACP_isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006750</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f6dd7c4-e043-4833-ae2f-ccd001b942a8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tdec2eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cdec3eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADSL1r" metaid="c79adf30-efb3-4c5b-ab16-e56fe3a29df1" name="adenylsuccinate_lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002120</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 4.3.2.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c79adf30-efb3-4c5b-ab16-e56fe3a29df1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.2.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002120"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dcamp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHNPA2" metaid="_9e213471-7d57-43b4-ad83-a49b7090064d" name="dihydroneopterin_aldolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007450</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.2.25</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9e213471-7d57-43b4-ad83-a49b7090064d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007450"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhnpt_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_6hmhpt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gcald_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OMMBLHX" metaid="b915eb59-4fc6-4502-ab13-9ac3eb413803" name="2_Octaprenyl_3_methyl_6_methoxy_1_4_benzoquinol_hydroxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010940</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b915eb59-4fc6-4502-ab13-9ac3eb413803"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010940"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2ommbl_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="0.5"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2omhmbl_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSSADS" metaid="_9d0218c9-f286-40a8-b0ed-f09b4a88786a" name="R_CYSSADS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002960</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 4.1.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9d0218c9-f286-40a8-b0ed-f09b4a88786a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3sala_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_so2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MEOHtex" metaid="f8f0a2d0-bbae-4aa8-9861-728f3528ccc0" name="Methanol_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f8f0a2d0-bbae-4aa8-9861-728f3528ccc0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_meoh_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_meoh_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MG2tpp" metaid="_468c5216-dda7-4ea0-a1be-6d9beafa5192" name="magnesium___2__transport_in_via_diffusion" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010210</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_468c5216-dda7-4ea0-a1be-6d9beafa5192"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010210"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mg2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mg2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE140abcpp" metaid="_1c8a405f-6f2b-4349-89a5-74b3a30b1631" name="phosphatidylethanolamine_transport_via_ABC_system__n_C14_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1c8a405f-6f2b-4349-89a5-74b3a30b1631"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe140_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HISTRS" metaid="cf58a71b-ee9b-4e1d-b6bf-7b0e5b537f32" name="Histidyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020350</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.21</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cf58a71b-ee9b-4e1d-b6bf-7b0e5b537f32"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.21"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020350"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnahis_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_his_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_histrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGDCpp" metaid="e5dcc1c1-e648-428d-86dd-7d5bb7df0e6e" name="R_ARGDCpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015380</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 4.1.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e5dcc1c1-e648-428d-86dd-7d5bb7df0e6e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015380"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_arg_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_agm_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS140" metaid="f9183968-aad1-4479-871e-85f5ddcce669" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f9183968-aad1-4479-871e-85f5ddcce669"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ddcaACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3omrsACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OPHHX" metaid="_3f44626a-4910-45ac-86fa-da92802e5d01" name="2_Octaprenylphenol_hydroxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017800</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3f44626a-4910-45ac-86fa-da92802e5d01"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2oph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="0.5"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2ohph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS141" metaid="_0ec69bdf-88ce-465f-9218-2538ee9ad8d1" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0ec69bdf-88ce-465f-9218-2538ee9ad8d1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cddec5eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ocmrs7eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR180x" metaid="_3bfc5d63-2c65-4b18-acba-50fc84cb20b6" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3bfc5d63-2c65-4b18-acba-50fc84cb20b6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_toctd2eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ocdcaACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KDOCT2" metaid="_3d706d9f-080e-4204-ae23-70f909a44e8b" name="3_deoxy_manno_octulosonate_cytidylyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019240</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.38</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d706d9f-080e-4204-ae23-70f909a44e8b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.38"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ckdo_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR2" metaid="_79aeb888-3830-43ed-9cc4-cc33e236b38e" name="ribonucleoside_diphosphate_reductase__GDP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_023110 AND XFCFBP8418_023120 ) OR ( XFCFBP8418_013260 AND XFCFBP8418_023110 AND XFCFBP8418_023120 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_79aeb888-3830-43ed-9cc4-cc33e236b38e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dgdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR1" metaid="b3219740-d050-4774-a42b-f624af5ded79" name="ribonucleoside_diphosphate_reductase__ADP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_023110 AND XFCFBP8418_023120 ) OR ( XFCFBP8418_013260 AND XFCFBP8418_023110 AND XFCFBP8418_023120 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b3219740-d050-4774-a42b-f624af5ded79"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FMETTRS" metaid="a2feb2dc-03c1-4e58-b8cc-f958156cc5ef" name="Methionyl_tRNA_formyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009950</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 2.1.2.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a2feb2dc-03c1-4e58-b8cc-f958156cc5ef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mettrna_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_10fthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fmettrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SPODM" metaid="_044de510-3507-4d74-8e62-1e1e87019bd4" name="superoxide_dismutase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012590</p> + <p>SUBSYSTEM: Superoxide_radicals_degradation</p> + <p>EC_NUMBER: 1.15.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_044de510-3507-4d74-8e62-1e1e87019bd4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.15.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_o2s_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD11" metaid="_6e7c9853-0f50-49ff-8fbb-bb6eb66501fe" name="5__nucleotidase__IMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6e7c9853-0f50-49ff-8fbb-bb6eb66501fe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ins_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD10" metaid="e4bb43b8-b699-46df-9320-8e53cae7b56f" name="5__nucleotidase__XMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e4bb43b8-b699-46df-9320-8e53cae7b56f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_xtsn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR4" metaid="_896b0e63-5634-4dcf-9958-674ac77696c7" name="ribonucleoside_diphosphate_reductase__UDP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_023110 AND XFCFBP8418_023120 ) OR ( XFCFBP8418_013260 AND XFCFBP8418_023110 AND XFCFBP8418_023120 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_896b0e63-5634-4dcf-9958-674ac77696c7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dudp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR3" metaid="cd2264e5-2cbb-4db6-ad9d-c07c43bcd14e" name="ribonucleoside_diphosphate_reductase__CDP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_023110 AND XFCFBP8418_023120 ) OR ( XFCFBP8418_013260 AND XFCFBP8418_023110 AND XFCFBP8418_023120 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cd2264e5-2cbb-4db6-ad9d-c07c43bcd14e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dcdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD12" metaid="_5d330281-1b50-41c2-bc1c-73ce1a42e5e7" name="5__nucleotidase__dIMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5d330281-1b50-41c2-bc1c-73ce1a42e5e7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dimp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_din_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAAGDS" metaid="_03a62112-53cb-40a6-a5e6-9c48a58b81f1" name="UDP_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimelate_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011300</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_03a62112-53cb-40a6-a5e6-9c48a58b81f1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011300"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uamag_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_26dap_M_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ugmd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDEP3pp" metaid="_48f0e7d9-7db2-4279-8c7e-bf92bf1db331" name="murein_D_D_endopeptidase__murein5px4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_48f0e7d9-7db2-4279-8c7e-bf92bf1db331"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5px4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein5p4p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NH4tex" metaid="_248b94d3-106d-4470-8cca-3f6f228bbc8a" name="ammonia_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_248b94d3-106d-4470-8cca-3f6f228bbc8a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nh4_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD121" metaid="_1d7ccf88-33dd-446c-bcea-f99ba152f541" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C12_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1d7ccf88-33dd-446c-bcea-f99ba152f541"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hcddec5eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_t3c5ddeceACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD120" metaid="_22084632-d9f6-40cb-b58f-2e5f42d8c8ad" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_22084632-d9f6-40cb-b58f-2e5f42d8c8ad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hddecACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tddec2eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_COBALT2tpp" metaid="_71a1ba76-5e3a-4113-a1dc-f3d98c0bbe94" name="cobalt_transport_in_via_permease__no_H__" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010210</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_71a1ba76-5e3a-4113-a1dc-f3d98c0bbe94"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010210"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cobalt2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cobalt2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OROTt2_2pp" metaid="_9b8a138c-ca3d-4dcd-b4a2-4e283339ac74" name="Orotate_transport_via_proton_symport__2_H___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025480</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9b8a138c-ca3d-4dcd-b4a2-4e283339ac74"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_orot_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_orot_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MN2t3pp" metaid="_31e36b04-fa1f-40e4-9738-d89a6765dd6b" name="manganese__Mn_2__transport_out_via_proton_antiport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010570</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_31e36b04-fa1f-40e4-9738-d89a6765dd6b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mn2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mn2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NADK" metaid="cd65e5b8-65f7-46b4-8e78-3659cbd30a6a" name="NAD_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_027970</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.9.23</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cd65e5b8-65f7-46b4-8e78-3659cbd30a6a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.9.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027970"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METDtex" metaid="_4238a353-d6cb-4a6c-a9ac-5f3e78809b5e" name="R_METDtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4238a353-d6cb-4a6c-a9ac-5f3e78809b5e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_met_D_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_met_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALATA_D2" metaid="_0a5e00e9-af40-4141-80c6-64e6817c3fbf" name="D_alanine_transaminase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0a5e00e9-af40-4141-80c6-64e6817c3fbf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pydx5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyam5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EPSsynthXF" metaid="_79e373ae-ac1a-4360-8bcb-89a7d0543645" name="R_EPSsynthXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021400 AND XFCFBP8418_021410 AND XFCFBP8418_021440 AND XFCFBP8418_021450 AND XFCFBP8418_021460</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_79e373ae-ac1a-4360-8bcb-89a7d0543645"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021410"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021400"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021450"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021460"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021440"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udpgalur_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpg_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_gdpmann_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_EPS_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ORNTA" metaid="d5102a3c-3a3c-434a-94d0-8b96be75b928" name="ornithine_transaminase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003360</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: 2.6.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d5102a3c-3a3c-434a-94d0-8b96be75b928"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_orn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu5sa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PMANM" metaid="e7613bec-6717-43e5-9a04-e731c28b552d" name="phosphomannomutase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026200</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 5.4.2.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e7613bec-6717-43e5-9a04-e731c28b552d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.2.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026200"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_man1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_man6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SDPTA" metaid="c1b371a7-cf60-4264-b23e-ed786ad87c66" name="succinyldiaminopimelate_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003360</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c1b371a7-cf60-4264-b23e-ed786ad87c66"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sl26da_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sl2a6o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MANptspp" metaid="f6e61095-8bae-4dd9-977a-512e79a6565e" name="R_MANptspp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f6e61095-8bae-4dd9-977a-512e79a6565e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_man_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_man6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALAt2tex" metaid="_96deabb3-b15e-44dc-9b44-fe6777fd975d" name="R_ALAt2tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_96deabb3-b15e-44dc-9b44-fe6777fd975d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR181x" metaid="_8bccbcf3-e7bf-473f-ae20-36fee6e62c8f" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8bccbcf3-e7bf-473f-ae20-36fee6e62c8f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_t3c11vaceACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_octeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSTS" metaid="_61b6ac42-738f-4dbc-a0de-595026000983" name="R_CYSTS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006490</p> + <p>SUBSYSTEM: Cystein_Metabolism</p> + <p>EC_NUMBER: 4.2.1.22</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_61b6ac42-738f-4dbc-a0de-595026000983"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.22"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006490"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hcys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cyst_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM4PCPpp" metaid="_2b90323d-3699-41a8-8135-de16322f7fe3" name="R_AGM4PCPpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: 3.4.17.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2b90323d-3699-41a8-8135-de16322f7fe3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhgm3p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP141abcpp" metaid="e4cac7b1-addf-4094-86dd-5626f799b1e7" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C14_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e4cac7b1-addf-4094-86dd-5626f799b1e7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp141_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MCOATA" metaid="_34b4986a-38cf-4f0e-b0ff-ac946164acd4" name="Malonyl_CoA_ACP_transacylase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_005920</p> + <p>SUBSYSTEM: Membrane_Lipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.39</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_34b4986a-38cf-4f0e-b0ff-ac946164acd4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.39"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005920"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_malcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRMICI" metaid="_4a139dd6-6b1f-42a3-80fa-c1a652f92f40" name="1__5_phosphoribosyl__5___5_phosphoribosylamino_methylideneamino_imidazole_4_carboxamide_isomerase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020280</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 5.3.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4a139dd6-6b1f-42a3-80fa-c1a652f92f40"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020280"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_prfp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_prlp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRFGS" metaid="ae9884a2-12e6-45c1-a0b3-eb9c374952fe" name="phosphoribosylformylglycinamidine_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003400</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 6.3.5.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ae9884a2-12e6-45c1-a0b3-eb9c374952fe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.5.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003400"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fgam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fpram_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UBQBM" metaid="f9dec702-3dc6-451a-aba0-3f7b5574765e" name="ubiquinone_biosynthesis_monooxygenase_Coq7" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002280</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.14.13.-</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f9dec702-3dc6-451a-aba0-3f7b5574765e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.14.13.-"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002280"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2hpmhobq_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2hp6mobq_me_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHQD" metaid="_79202ee9-17eb-4a25-8b3d-0aba67bfb05b" name="3_dehydroquinate_dehydratase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014540</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_79202ee9-17eb-4a25-8b3d-0aba67bfb05b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3dhq_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3dhsk_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDPGDC" metaid="_714296ef-25a8-4a7e-8a7d-9b785ef36d1b" name="R_UDPGDC" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006440</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.305</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_714296ef-25a8-4a7e-8a7d-9b785ef36d1b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.305"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006440"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpglcur_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpLa4o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALAR" metaid="f41507bb-f146-4e38-a834-64dc68ceed40" name="alanine_racemase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010700</p> + <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> + <p>EC_NUMBER: 5.1.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f41507bb-f146-4e38-a834-64dc68ceed40"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010700"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDCPPtppi" metaid="_43042d06-07b1-4ee3-9e5a-e3da8c996d33" name="undecaprenyl_phosphate_transport__cytoplasm_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_43042d06-07b1-4ee3-9e5a-e3da8c996d33"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udcpp_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_udcpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP2" metaid="_00f0b404-4433-4991-b1ea-6ba5460196bd" name="R_NTPP2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_015800 ) OR ( XFCFBP8418_023820 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_00f0b404-4433-4991-b1ea-6ba5460196bd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023820"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP1" metaid="_6404b198-63b5-426c-a670-f1f20da40309" name="R_NTPP1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_015800 ) OR ( XFCFBP8418_023820 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6404b198-63b5-426c-a670-f1f20da40309"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023820"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dgtp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dgmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHTNDA2" metaid="_1f4c0b90-0cb9-448e-ba07-43b65152c5a9" name="R_CHTNDA2" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021670</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.5.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1f4c0b90-0cb9-448e-ba07-43b65152c5a9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021670"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chtbs_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_ac_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_chitos_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPTRS" metaid="cece8e95-5d53-4e5d-b26e-419e911c3979" name="Aspartyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_016880</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cece8e95-5d53-4e5d-b26e-419e911c3979"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016880"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaasp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_asptrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_glc_D_e" metaid="d8bc6d91-13e2-422c-ad0b-731ac272e030" name="R_EX_glc_D_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d8bc6d91-13e2-422c-ad0b-731ac272e030"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_glc_D_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRAI" metaid="_0b7be11a-f50b-43a9-88c3-8f0bf41f3c55" name="phosphoribosylanthranilate_isomerase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026720</p> + <p>SUBSYSTEM: Tyrosine__tryptophan__and_phenylalanine_metabolism</p> + <p>EC_NUMBER: 5.3.1.24</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0b7be11a-f50b-43a9-88c3-8f0bf41f3c55"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.24"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026720"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pran_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2cpr5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MSO3abcpp" metaid="_677c2f8c-7961-4be8-b1d7-5a0b60fb21a8" name="methanesulfonate_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007680 ) OR ( XFCFBP8418_009840 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_677c2f8c-7961-4be8-b1d7-5a0b60fb21a8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009840"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mso3_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mso3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHQS" metaid="c8451369-a3cb-451c-a1ab-747dc7433c89" name="3_dehydroquinate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004170</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.2.3.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c8451369-a3cb-451c-a1ab-747dc7433c89"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.3.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004170"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2dda7p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3dhq_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE140" metaid="cfb3384a-9b94-4fd2-ba77-9cd1ab312909" name="R_FACOAE140" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cfb3384a-9b94-4fd2-ba77-9cd1ab312909"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tdcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ttdca_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_5DGLCNR" metaid="_8e3baeca-0b92-41fd-98d5-bf72e1a03b07" name="5_dehydro_D_gluconate_reductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.1.1.69</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8e3baeca-0b92-41fd-98d5-bf72e1a03b07"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.69"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5dglcn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glcn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE141" metaid="_9af9b25b-0657-4114-b578-efca4a85f6a7" name="R_FACOAE141" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9af9b25b-0657-4114-b578-efca4a85f6a7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdecoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ttdcea_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NAMNPP" metaid="_829a24cf-0b33-4fb2-af68-514ec3e938ae" name="R_NAMNPP" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024030</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.4.21</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_829a24cf-0b33-4fb2-af68-514ec3e938ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.21"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nicrnt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GDPTPDP" metaid="_01138718-ee8e-47e9-b1f4-f8562732613d" name="guanosine_3_diphosphate_5_triphosphate_3_diphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_008750</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.1.7.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01138718-ee8e-47e9-b1f4-f8562732613d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.7.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdptp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD100" metaid="d9b5e3b1-62f4-42c4-867c-c89d6e183f6b" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C10_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d9b5e3b1-62f4-42c4-867c-c89d6e183f6b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hdecACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_tdec2eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_COLIPAabcpp" metaid="_4af05ec1-1bed-4aba-a2cb-d0dbf9ec9c36" name="core_oligosaccharide_lipid_A_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4af05ec1-1bed-4aba-a2cb-d0dbf9ec9c36"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_core_kdo2lip6_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_core_kdo2lip6_XF_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL161t2pp" metaid="a06a1dff-b332-4665-882d-c20f8bafdd8f" name="fatty_acid_CoA_ligase__hexadecenoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a06a1dff-b332-4665-882d-c20f8bafdd8f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hdcea_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hdcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RIBtex" metaid="_4ddf94c1-6b92-40b8-aa6a-bdd0d4400dc5" name="R_RIBtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4ddf94c1-6b92-40b8-aa6a-bdd0d4400dc5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_rib_D_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_rib_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_gln_L_e" metaid="_597c5adc-db49-44d2-94f1-b67ad04a0da4" name="R_EX_gln_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_597c5adc-db49-44d2-94f1-b67ad04a0da4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_gln_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OTOTt2_2tex" metaid="a210e18a-5994-4374-94bd-72287fee0ca0" name="R_OTOTt2_2tex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a210e18a-5994-4374-94bd-72287fee0ca0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_orot_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_orot_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_ADE" metaid="b3e3b004-8105-4516-a6e1-7f94dcafe766" name="R_DM_ADE" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b3e3b004-8105-4516-a6e1-7f94dcafe766"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ade_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OMPDC" metaid="d93dc4e1-edfc-4c32-85ab-7653f4ed523a" name="orotidine_5__phosphate_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014470</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 4.1.1.23</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d93dc4e1-edfc-4c32-85ab-7653f4ed523a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014470"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_orot5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CCGS" metaid="aeefd093-9780-4f3a-a4bc-c4b1b159b5ce" name="7_cyano_7_carbaguanine_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_016870</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.4.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#aeefd093-9780-4f3a-a4bc-c4b1b159b5ce"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_preq0_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TSULtex" metaid="ec927e32-cf1d-4c73-918a-72f5029322db" name="thiosulfate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ec927e32-cf1d-4c73-918a-72f5029322db"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tsul_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_tsul_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DATPHs" metaid="_2b1cac90-06fb-4bc4-b049-4dd1f620efa8" name="R_DATPHs" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2b1cac90-06fb-4bc4-b049-4dd1f620efa8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_datp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ditp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PTRCt2pp" metaid="e78db6cd-0657-4fea-8f01-81c6ec2b22c9" name="putrescine_transport_in_via_proton_symport" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_020210 ) OR ( XFCFBP8418_020220 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e78db6cd-0657-4fea-8f01-81c6ec2b22c9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020210"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020220"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ptrc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ptrc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACMAMUT" metaid="e95f5e68-9ab6-4458-a480-f20dfe2db6e7" name="R_ACMAMUT" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021400</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.4.1.180</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e95f5e68-9ab6-4458-a480-f20dfe2db6e7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.1.180"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021400"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_unaga_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uacmamu_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_unagamu_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EGMEACPR" metaid="_67a233e0-d4ee-4dc9-942d-b1e17c4c40db" name="Enoylglutaryl__ACP__methyl_ester_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.3.1.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_67a233e0-d4ee-4dc9-942d-b1e17c4c40db"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_egmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gmeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOXR2" metaid="_96cc1688-4359-4703-84b6-1435cb691796" name="L_methionine_R_sulfoxide_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010720 AND XFCFBP8418_013260</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 1.8.4.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_96cc1688-4359-4703-84b6-1435cb691796"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.4.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_metsox_R_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOXR1" metaid="_5df23b30-a3f6-4676-921e-54191df808b1" name="L_methionine_S_oxide_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000660 AND XFCFBP8418_013260</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 1.8.4.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5df23b30-a3f6-4676-921e-54191df808b1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.4.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000660"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_metsox_S_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EPStppXF" metaid="_5fb48694-ac9e-4ed6-b99d-173ee6449183" name="R_EPStppXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021420 AND XFCFBP8418_021460 AND XFCFBP8418_021480</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5fb48694-ac9e-4ed6-b99d-173ee6449183"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021480"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021460"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_EPS_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_EPS_XF_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KDOPS" metaid="fafc6c96-1fa9-43ae-9ec8-ef503665762a" name="3_deoxy__D_manno_octulosonic__acid_8_phosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022230</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.55</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fafc6c96-1fa9-43ae-9ec8-ef503665762a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.55"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022230"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ara5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_kdo8p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLTGY3pp" metaid="_8c2d34c8-0575-45ca-9afa-b2bb6aa92508" name="murein_lytic_transglycosylase__murein3p3p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_003940 ) OR ( XFCFBP8418_019770 )</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8c2d34c8-0575-45ca-9afa-b2bb6aa92508"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019770"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein3p3p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm3p_p" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_cit_e" metaid="_4102b033-7400-4144-a90c-dd4e3e8e846d" name="R_EX_cit_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4102b033-7400-4144-a90c-dd4e3e8e846d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_cit_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KDOPP" metaid="_3232385a-d5de-435f-91cd-5bc3226f132f" name="3_deoxy_manno_octulosonate_8_phosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003480</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.3.45</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3232385a-d5de-435f-91cd-5bc3226f132f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.45"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo8p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_kdo_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INS2D" metaid="_23902905-3c66-4f67-8f44-a07f6f2b556d" name="inositol_2_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.1.1.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_23902905-3c66-4f67-8f44-a07f6f2b556d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_inost_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2ins_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR160x" metaid="fb6781bf-f459-4e4d-9c02-b1ab55166450" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fb6781bf-f459-4e4d-9c02-b1ab55166450"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tpalm2eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_palmACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUMt2_2pp" metaid="_9bfdf378-c0f2-4e54-baac-18954903679e" name="Fumarate_transport_via_proton_symport__2_H___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025480</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9bfdf378-c0f2-4e54-baac-18954903679e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fum_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTRLASE" metaid="_100a3131-464c-4fe3-8fbc-96b217be9163" name="nitrilase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004900</p> + <p>SUBSYSTEM: Nitrile_degradation</p> + <p>EC_NUMBER: 3.5.5.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_100a3131-464c-4fe3-8fbc-96b217be9163"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.5.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_ind3acnl_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ind3ac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Bztpp" metaid="_285c7944-ea46-46e8-a16c-61123969b4dc" name="R_Bztpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_285c7944-ea46-46e8-a16c-61123969b4dc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_bz_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_bz_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS60" metaid="_34b80282-f769-4dfd-ba18-8049c74ec799" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C6_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_34b80282-f769-4dfd-ba18-8049c74ec799"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_butACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ohexACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE160" metaid="_72efae78-afaa-4b0f-9a5f-547547ffbf40" name="R_FACOAE160" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_72efae78-afaa-4b0f-9a5f-547547ffbf40"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pmtcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hdca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ATPM" metaid="_4185d916-7cbb-46e0-adea-86c5eacb2919" name="R_ATPM" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Biomass_and_maintenance_functions</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4185d916-7cbb-46e0-adea-86c5eacb2919"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METabcpp" metaid="_00d49cea-7b15-48c0-bf8b-d807fb1545ac" name="L_methionine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010500 AND XFCFBP8418_010510 AND XFCFBP8418_010520</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_00d49cea-7b15-48c0-bf8b-d807fb1545ac"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010520"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CA2tpp" metaid="_8a8e45aa-9098-4c26-a506-006e63380941" name="R_CA2tpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8a8e45aa-9098-4c26-a506-006e63380941"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ca2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ca2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE161" metaid="_366b4b50-2bdd-4dbf-95b4-4182b08ec755" name="R_FACOAE161" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_366b4b50-2bdd-4dbf-95b4-4182b08ec755"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hdcoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hdcea_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ME2" metaid="e38276c1-2ba0-4f9f-a4c3-3f01ca1a8cc3" name="malic_enzyme__NADP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025470</p> + <p>SUBSYSTEM: Anaplerotic_Reactions</p> + <p>EC_NUMBER: 1.1.1.40</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e38276c1-2ba0-4f9f-a4c3-3f01ca1a8cc3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.40"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025470"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mal_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SERabcpp" metaid="_9dd1c7b0-5fe9-488f-895a-52c4f7706186" name="R_SERabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9dd1c7b0-5fe9-488f-895a-52c4f7706186"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHAD2" metaid="b47e0de9-8e54-4c25-9acb-8fa599657aa4" name="Dihydroxy_acid_dehydratase__2_3_dihydroxy_3_methylpentanoate_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014980</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b47e0de9-8e54-4c25-9acb-8fa599657aa4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014980"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_23dhmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3mop_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UPP3S" metaid="_0b5f9b39-03a1-424b-a3d8-378a01607d24" name="uroporphyrinogen_III_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018150</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.75</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0b5f9b39-03a1-424b-a3d8-378a01607d24"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.75"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018150"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hmbil_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_uppg3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FLVR" metaid="_323efc0c-f6dc-4c47-9449-08a6f6e35350" name="R_FLVR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002700 AND XFCFBP8418_002710</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.5.1.30</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_323efc0c-f6dc-4c47-9449-08a6f6e35350"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.30"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002710"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002700"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ribflv_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_rbflvrd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHAD1" metaid="_77cebed7-605b-47bd-a764-4b13caba5e3c" name="dihydroxy_acid_dehydratase__2_3_dihydroxy_3_methylbutanoate_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014980</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_77cebed7-605b-47bd-a764-4b13caba5e3c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014980"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_23dhmb_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3mob_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NADS2" metaid="_99c270f2-750c-4259-b953-d14e2c9425e3" name="NAD_synthase__glutamine_hydrolysing_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000890</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.5.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_99c270f2-750c-4259-b953-d14e2c9425e3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.5.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dnad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SPS" metaid="_51b0db8a-aa4b-4a35-a77b-266a4ff17bfe" name="R_SPS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010390</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.4.1.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_51b0db8a-aa4b-4a35-a77b-266a4ff17bfe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.1.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_suc6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SEAHCYSHYD" metaid="_1c78443e-bf0c-4b1f-a8cb-2c48272a0288" name="Se_Adenosylselenohomocysteine_hydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024950</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.3.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1c78443e-bf0c-4b1f-a8cb-2c48272a0288"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.3.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_seahcys_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_selhcys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_U23GAATXF" metaid="_5ed5820f-384c-4032-a184-2e2bb929b8b9" name="R_U23GAATXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024880</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.191</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ed5820f-384c-4032-a184-2e2bb929b8b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.191"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024880"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hddecACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_u3hga_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_u23ga_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDH" metaid="e8b66e0a-dc88-46b6-b724-c95e46904c14" name="malate_dehydrogenase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023000</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 1.1.1.37</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e8b66e0a-dc88-46b6-b724-c95e46904c14"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.37"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023000"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mal_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDSKXF" metaid="e05c0ff9-f3ee-44e4-ae6c-5a8af1fcdd02" name="R_TDSKXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024520</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.7.1.130</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e05c0ff9-f3ee-44e4-ae6c-5a8af1fcdd02"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.130"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024520"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_lipidAds_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lipidA_XF_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DPCOAK" metaid="_72098093-e1d9-4f34-a7c1-7fa433fa2788" name="dephospho_CoA_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011870</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.1.24</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_72098093-e1d9-4f34-a7c1-7fa433fa2788"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.24"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dpcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLTN2pp" metaid="_3a2cf021-2280-4af5-845b-33197249f1e9" name="gluconolactonase__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022170</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.1.1.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3a2cf021-2280-4af5-845b-33197249f1e9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.1.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022170"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g15l_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glcn_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRabcpp" metaid="d6621e0d-c54a-4e88-9392-506216b82986" name="R_THRabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d6621e0d-c54a-4e88-9392-506216b82986"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thr_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thr_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYC2Pabcpp" metaid="d2c55c67-7451-45ff-b341-7488e1a4909a" name="sn_Glycerol_2_phosphate_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d2c55c67-7451-45ff-b341-7488e1a4909a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc2p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc2p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSSr2" metaid="_36a33785-355e-44d9-b292-1c881970cfcb" name="R_CYSSr2" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006490 ) OR ( XFCFBP8418_010590 ) OR ( XFCFBP8418_010980 )</p> + <p>SUBSYSTEM: Cystein_Metabolism</p> + <p>EC_NUMBER: 2.5.1.47</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_36a33785-355e-44d9-b292-1c881970cfcb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.47"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010590"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010980"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006490"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acser_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPA2" metaid="_7faf16e3-0feb-400d-8cdd-1c9c8f111457" name="inorganic_triphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_010630 ) OR ( XFCFBP8418_012360 )</p> + <p>SUBSYSTEM: Anaplerotic_Reactions</p> + <p>EC_NUMBER: 3.6.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7faf16e3-0feb-400d-8cdd-1c9c8f111457"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012360"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pppi_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_COLIPAabctex" metaid="_02c0cfcc-783a-4ca4-8d3e-31820d1f8dd9" name="R_COLIPAabctex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003500 AND XFCFBP8418_003510 AND XFCFBP8418_015320 AND XFCFBP8418_015330</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_02c0cfcc-783a-4ca4-8d3e-31820d1f8dd9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015320"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_core_kdo2lip6_XF_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_core_kdo2lip6_XF_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DMATT" metaid="_2aa97013-926a-4b5f-9998-5ed411e27b82" name="dimethylallyltranstransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005980</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2aa97013-926a-4b5f-9998-5ed411e27b82"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005980"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dmpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ipdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPt2_3pp" metaid="c4005074-397f-4200-9656-c1c1ff3a45de" name="R_ASPt2_3pp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c4005074-397f-4200-9656-c1c1ff3a45de"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_asp_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSTRS" metaid="c903eca2-cd93-4a27-b834-d0044c22820c" name="Cysteinyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025320</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c903eca2-cd93-4a27-b834-d0044c22820c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025320"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnacys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cystrna_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPGPPDP" metaid="_5e5254d2-8d42-429d-94f9-fac11e594eef" name="guanosine_3__5__bis_diphosphate__3__diphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_008750</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.1.7.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5e5254d2-8d42-429d-94f9-fac11e594eef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.7.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ppgpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR161x" metaid="_3766821c-aafe-44f0-bfee-3a2b6449de7f" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3766821c-aafe-44f0-bfee-3a2b6449de7f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_t3c9palmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hdeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_pi_e" metaid="_572cf404-6cb2-432d-9834-ea31cca085e0" name="R_EX_pi_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_572cf404-6cb2-432d-9834-ea31cca085e0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_pi_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RFAMPtpp" metaid="d8ed4b2f-81a6-4b6c-bb5e-dbdf61b056f3" name="Rifampin_transport_via_TolC_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d8ed4b2f-81a6-4b6c-bb5e-dbdf61b056f3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_rfamp_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_rfamp_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK180" metaid="_68cf3dab-f648-4345-ad8b-80f10c25045f" name="diacylglycerol_kinase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.1.107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_68cf3dab-f648-4345-ad8b-80f10c25045f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CITt10" metaid="c5c7be53-9be9-4db8-bea3-ef614b2faa48" name="R_CITt10" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025570</p> + <p>SUBSYSTEM: Transport</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c5c7be53-9be9-4db8-bea3-ef614b2faa48"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cit_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_mg2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cit_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mg2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK181" metaid="_29e19ab5-e127-4ed0-a7bc-0a8d226d4b3e" name="diacylglycerol_kinase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.1.107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_29e19ab5-e127-4ed0-a7bc-0a8d226d4b3e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_12dgr181_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GUAPRT" metaid="_8757a5bb-8bc0-4c66-8411-7747b3c46cad" name="guanine_phosphoribosyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021340</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.4.2.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8757a5bb-8bc0-4c66-8411-7747b3c46cad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gua_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G6PDA" metaid="_55f550d4-f869-44f9-a823-a6eb46a855aa" name="R_G6PDA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_55f550d4-f869-44f9-a823-a6eb46a855aa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gam6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CO2tpp" metaid="_592d5d7c-c23c-49c8-af79-69a9a21a2fda" name="CO2_transporter_via_diffusion__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_592d5d7c-c23c-49c8-af79-69a9a21a2fda"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_co2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IMPC" metaid="_7d0bf977-e0f9-4ab5-af73-71af1b9a3d62" name="IMP_cyclohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001030</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 3.5.4.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7d0bf977-e0f9-4ab5-af73-71af1b9a3d62"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fprica_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IMPD" metaid="_72dca34a-c389-4260-9c38-045ec53ce65b" name="IMP_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004780</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.205</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_72dca34a-c389-4260-9c38-045ec53ce65b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.205"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004780"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR120tipp" metaid="_2f365b72-eab7-4293-8e61-d3977b9fa9bb" name="R_12DGR120tipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2f365b72-eab7-4293-8e61-d3977b9fa9bb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr120_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_12dgr120_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MCTP1App" metaid="_1a4b0402-ae16-41d7-98d1-c957b449ea7f" name="murein_crosslinking_transpeptidase_1A__A2pm__D_ala___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004370 ) OR ( XFCFBP8418_008630 ) OR ( XFCFBP8418_010420 ) OR ( XFCFBP8418_011310 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1a4b0402-ae16-41d7-98d1-c957b449ea7f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004370"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011310"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein5px4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTP5" metaid="b143a1d1-0d57-43a7-85d4-71709412e774" name="R_NTP5" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006890</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b143a1d1-0d57-43a7-85d4-71709412e774"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHDPRy" metaid="_77a79940-cd78-46f6-ab2d-c08956d165d6" name="dihydrodipicolinate_reductase__NADPH_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023980</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 1.17.1.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_77a79940-cd78-46f6-ab2d-c08956d165d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.1.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023980"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_23dhdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SUCD1" metaid="_9a77c6f3-76f5-4645-8c68-52b4ee104b38" name="succinate_dehydrogenase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024610 AND XFCFBP8418_024620 AND XFCFBP8418_024640</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 1.3.99.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a77c6f3-76f5-4645-8c68-52b4ee104b38"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.99.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024610"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024620"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024640"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HISTP" metaid="b1733f22-e0c4-4eb7-96f9-649bb21770c6" name="histidinol_phosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020300</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 3.1.3.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b1733f22-e0c4-4eb7-96f9-649bb21770c6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020300"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hisp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_histd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NMNDA" metaid="_61a7656c-7c46-4733-b4bd-1793d3d8fb5c" name="R_NMNDA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014880</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.5.1.42</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_61a7656c-7c46-4733-b4bd-1793d3d8fb5c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.42"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014880"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nmn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nicrnt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTP1" metaid="d3528cbd-6c40-449d-bba4-dd0cd8970553" name="R_NTP1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006890</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d3528cbd-6c40-449d-bba4-dd0cd8970553"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE180" metaid="ada0daac-03d6-4b7a-9282-497bb1c97f15" name="R_FACOAE180" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ada0daac-03d6-4b7a-9282-497bb1c97f15"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_stcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ocdca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XF_Biomass" metaid="_7225f85e-e5f6-4220-ad18-5b756a79b0ba" name="R_XF_Biomass" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Biomass_and_maintenance_functions</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7225f85e-e5f6-4220-ad18-5b756a79b0ba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pe181_c" stoichiometry="0.007742407"/> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="0.000249533"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="0.000249533"/> + <speciesReference constant="true" species="M_pe160_c" stoichiometry="0.019313938"/> + <speciesReference constant="true" species="M_mobd_c" stoichiometry="7.37685E-6"/> + <speciesReference constant="true" species="M_spmd_c" stoichiometry="0.007535445"/> + <speciesReference constant="true" species="M_pe160_p" stoichiometry="0.049664413"/> + <speciesReference constant="true" species="M_pe181_p" stoichiometry="0.019909046"/> + <speciesReference constant="true" species="M_ni2_c" stoichiometry="0.000343024"/> + <speciesReference constant="true" species="M_thrtrna_c" stoichiometry="0.248213969"/> + <speciesReference constant="true" species="M_clpn160_p" stoichiometry="0.004598497"/> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="0.0002495333"/> + <speciesReference constant="true" species="M_murein3p3p_p" stoichiometry="0.001503009"/> + <speciesReference constant="true" species="M_chor_c" stoichiometry="0.000249533"/> + <speciesReference constant="true" species="M_leutrna_c" stoichiometry="0.440920172"/> + <speciesReference constant="true" species="M_fad_c" stoichiometry="0.000249533"/> + <speciesReference constant="true" species="M_lipopb_c" stoichiometry="3.35193E-6"/> + <speciesReference constant="true" species="M_clpn181_p" stoichiometry="0.001843406"/> + <speciesReference constant="true" species="M_murein4p4p_p" stoichiometry="0.006012037"/> + <speciesReference constant="true" species="M_10fthf_c" stoichiometry="0.000249533"/> + <speciesReference constant="true" species="M_asptrna_c" stoichiometry="0.236169831"/> + <speciesReference constant="true" species="M_glutrna_c" stoichiometry="0.257639815"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="0.00018715"/> + <speciesReference constant="true" species="M_dgtp_c" stoichiometry="0.03649201"/> + <speciesReference constant="true" species="M_cobalt2_c" stoichiometry="2.67411E-5"/> + <speciesReference constant="true" species="M_pydx5p_c" stoichiometry="0.000249533"/> + <speciesReference constant="true" species="M_asntrna_c" stoichiometry="0.236169831"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="50.119554117"/> + <speciesReference constant="true" species="M_glntrna_c" stoichiometry="0.257639815"/> + <speciesReference constant="true" species="M_phetrna_c" stoichiometry="0.181185724"/> + <speciesReference constant="true" species="M_cystrna_c" stoichiometry="0.089545546"/> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="4.99065E-5"/> + <speciesReference constant="true" species="M_pg160_c" stoichiometry="0.008913919"/> + <speciesReference constant="true" species="M_pg181_c" stoichiometry="0.003573336"/> + <speciesReference constant="true" species="M_fe2_c" stoichiometry="0.007137104"/> + <speciesReference constant="true" species="M_so4_c" stoichiometry="0.004610532"/> + <speciesReference constant="true" species="M_mlthf_c" stoichiometry="0.000249533"/> + <speciesReference 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constant="true" species="M_trnahis_c" stoichiometry="0.092687495"/> + <speciesReference constant="true" species="M_trnaile_c" stoichiometry="0.284346382"/> + <speciesReference constant="true" species="M_trnathr_c" stoichiometry="0.248213969"/> + <speciesReference constant="true" species="M_trnamet_c" stoichiometry="0.150289892"/> + <speciesReference constant="true" species="M_trnaser_c" stoichiometry="0.211034239"/> + <speciesReference constant="true" species="M_trnaasp_c" stoichiometry="0.236169831"/> + <speciesReference constant="true" species="M_trnatrp_c" stoichiometry="0.055507765"/> + <speciesReference constant="true" species="M_trnaasn_c" stoichiometry="0.236169831"/> + <speciesReference constant="true" species="M_trnatyr_c" stoichiometry="0.135103806"/> + <speciesReference constant="true" species="M_trnaleu_c" stoichiometry="0.440920172"/> + <speciesReference constant="true" species="M_trnalys_c" stoichiometry="0.33618854"/> + <speciesReference constant="true" species="M_pi_c" 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species="M_trnaglu_c" stoichiometry="0.257639815"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="50"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTP3" metaid="a3a03ffb-6814-4b72-b7a4-725dbf6f2e0b" name="R_NTP3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006890</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a3a03ffb-6814-4b72-b7a4-725dbf6f2e0b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef 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xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0c8663e6-6905-42bb-a508-820611839b50"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006660"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_10fthf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gar_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fgam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE181" metaid="_4e8d1c7d-c92c-4e77-a531-effa1667dac1" name="R_FACOAE181" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4e8d1c7d-c92c-4e77-a531-effa1667dac1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_odecoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ocdcea_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_4HTHRS" metaid="b2cafea3-8726-4784-a4a2-48fa2a8aac8c" name="R_4HTHRS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020360</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.2.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b2cafea3-8726-4784-a4a2-48fa2a8aac8c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phthr_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4hthr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS80" metaid="ada9e98b-8a39-4be5-b056-306a508a168b" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C8_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ada9e98b-8a39-4be5-b056-306a508a168b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hexACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ooctACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2Otex" metaid="_2be83b09-483b-4a46-9dd0-31a07515d995" name="H2O_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2be83b09-483b-4a46-9dd0-31a07515d995"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_ac_e" metaid="_7ec6edd5-b5d3-48a6-9815-9a46c1f4fcc0" name="R_EX_ac_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7ec6edd5-b5d3-48a6-9815-9a46c1f4fcc0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_ac_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPCTn" metaid="_108332eb-3f81-4162-b8e3-1bcd0dc6caa3" name="R_ASPCTn" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_020390 ) OR ( XFCFBP8418_020390 )</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 2.1.3.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + 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<reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HISTD" metaid="b55307a6-0e24-4c04-a18a-50fb06f80c9e" name="histidinol_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020320</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.23</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b55307a6-0e24-4c04-a18a-50fb06f80c9e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020320"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_histd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_his_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NO3abcpp" metaid="_9522d0b7-f772-47d2-a160-5075d1284f88" name="Nitrate_ABC_transport" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007680</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: 3.6.3.26</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9522d0b7-f772-47d2-a160-5075d1284f88"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.26"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_no3_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_no3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HDCEAtexi" metaid="_23f15e46-b806-4dd5-8ede-cad6055826b4" name="R_HDCEAtexi" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_23f15e46-b806-4dd5-8ede-cad6055826b4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hdcea_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hdcea_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PYNP2r" metaid="d6acaab4-06bd-4525-97c8-5c45785d9e5e" name="pyrimidine_nucleoside_phosphorylase__uracil_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.4.2.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d6acaab4-06bd-4525-97c8-5c45785d9e5e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uri_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ura_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_r1p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METOX2s" metaid="_3599ab7d-5ca1-4f48-a7d6-a92fe92064c9" name="methionine_oxidation_2__spontaneous_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3599ab7d-5ca1-4f48-a7d6-a92fe92064c9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_metsox_R_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IGPDH" metaid="faddba79-b4a3-4926-bce0-a53eb0bca6b4" name="imidazoleglycerol_phosphate_dehydratase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020300</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#faddba79-b4a3-4926-bce0-a53eb0bca6b4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020300"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_eig3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_imacp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP8" metaid="c6e6c163-fb35-4065-9483-b861979d1fb8" name="R_NTPP8" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c6e6c163-fb35-4065-9483-b861979d1fb8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP7" metaid="_046bdf28-c0e5-4faf-83a5-02f473f3fdb9" name="R_NTPP7" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_046bdf28-c0e5-4faf-83a5-02f473f3fdb9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dttp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dtmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_s_e" metaid="d58ebf7a-8409-4264-993d-2093e0bf8638" name="R_EX_s_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d58ebf7a-8409-4264-993d-2093e0bf8638"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_s_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP9" metaid="_191b40e0-ca4d-44a4-9c02-9d8ce4932b14" name="Nucleoside_triphosphate_pyrophosphorylase__itp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002620</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_191b40e0-ca4d-44a4-9c02-9d8ce4932b14"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_itp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP4" metaid="_7ab016f3-69ae-4eed-8885-9d94da6b251a" name="Nucleoside_triphosphate_pyrophosphorylase__ctp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7ab016f3-69ae-4eed-8885-9d94da6b251a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LACZpp" metaid="e5b8a7d7-1c63-468e-a49a-389a1d5f2d2d" name="R_LACZpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007430</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.2.1.108</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e5b8a7d7-1c63-468e-a49a-389a1d5f2d2d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.108"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007430"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_lcts_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gal_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_glc_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SUCDi" metaid="ae9654e3-8ff5-405c-8ebc-a113bfcad1e6" name="succinate_dehydrogenase__irreversible_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024610 AND XFCFBP8418_024620 AND XFCFBP8418_024640</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 1.3.5.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ae9654e3-8ff5-405c-8ebc-a113bfcad1e6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.5.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024610"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024620"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024640"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP3" metaid="ba93ca71-afa0-469e-9d7f-1bd91cd4434a" name="Nucleoside_triphosphate_pyrophosphorylase__dctp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ba93ca71-afa0-469e-9d7f-1bd91cd4434a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dcmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP6" metaid="ed757e09-76c6-4cca-8623-918f4efc4b9b" name="R_NTPP6" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ed757e09-76c6-4cca-8623-918f4efc4b9b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP5" metaid="f14e6afc-e004-4b73-8d6d-6c8c0bb24d7e" name="Nucleoside_triphosphate_pyrophosphorylase__datp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f14e6afc-e004-4b73-8d6d-6c8c0bb24d7e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_datp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_damp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METDabcpp" metaid="_9bc8d89b-7d82-4017-b7e1-0759a6ae5774" name="R_METDabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010500 AND XFCFBP8418_010510 AND XFCFBP8418_010520</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9bc8d89b-7d82-4017-b7e1-0759a6ae5774"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010520"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_D_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG160abcpp" metaid="_86d0bbc7-9a05-4fd3-935a-bcf7aa6d3150" name="phosphatidylglycerol_transport_via_ABC_system__n_C16_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_86d0bbc7-9a05-4fd3-935a-bcf7aa6d3150"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg160_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ATPS4rpp" metaid="f0bf626d-9959-4d50-b908-57a66d78dd55" name="ATP_synthase__four_protons_for_one_ATP___periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023580 AND XFCFBP8418_023590 AND XFCFBP8418_023600 AND XFCFBP8418_023610 AND XFCFBP8418_023620 AND XFCFBP8418_023630 AND XFCFBP8418_023640 AND XFCFBP8418_023650</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 3.6.3.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f0bf626d-9959-4d50-b908-57a66d78dd55"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023600"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023620"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023610"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023590"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023580"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023640"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023650"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="4"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AMAOTr" metaid="e6386201-1524-44f5-bc9e-ff5b5450bfa2" name="adenosylmethionine_8_amino_7_oxononanoate_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015830</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.6.1.62</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e6386201-1524-44f5-bc9e-ff5b5450bfa2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.62"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015830"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_8aonn_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amob_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dann_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OAAt2_2pp" metaid="_5b7ec468-c57e-4f07-8b94-82144d9e3605" name="R_OAAt2_2pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025480</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5b7ec468-c57e-4f07-8b94-82144d9e3605"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> + <speciesReference constant="true" species="M_oaa_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NH3c" metaid="cf25787d-b625-4e50-854a-5f0419385415" name="R_NH3c" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cf25787d-b625-4e50-854a-5f0419385415"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nh3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ENOPH" metaid="ab9e5532-81ce-4b2e-8009-a6f5c6645073" name="R_ENOPH" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020250</p> + <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> + <p>EC_NUMBER: 3.1.3.77</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ab9e5532-81ce-4b2e-8009-a6f5c6645073"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.77"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dkmpp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dhmtp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CPPPGO2" metaid="_328d0e4c-75eb-41bd-8f17-10156c122052" name="Oxygen_Independent_coproporphyrinogen_III_oxidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002610</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.3.99.22</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_328d0e4c-75eb-41bd-8f17-10156c122052"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.99.22"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002610"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cpppg3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_amet_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dad_5_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pppg9_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_xyl_D_e" metaid="_2d657b08-0cfe-4ab3-852f-cb44d3994a2d" name="R_EX_xyl_D_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2d657b08-0cfe-4ab3-852f-cb44d3994a2d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_xyl_D_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LSERDHr" metaid="_1b843714-69dc-4846-9dd8-d0bb20effff2" name="R_LSERDHr" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015390</p> + <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.276</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1b843714-69dc-4846-9dd8-d0bb20effff2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.276"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2amsa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METOX1s" metaid="fc65cd2a-80ce-466a-bb41-c6bf6e2b84b5" name="methionine_oxidation__spontaneous_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fc65cd2a-80ce-466a-bb41-c6bf6e2b84b5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_metsox_S_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FEENTERtpp" metaid="_6d421127-f3ae-416c-94fc-18eb4cc116eb" name="R_FEENTERtpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025340</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6d421127-f3ae-416c-94fc-18eb4cc116eb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_enter_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_enter_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACt2rpp" metaid="_8f779ea9-4a35-44b7-b02b-61e49784d0bd" name="R_ACt2rpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8f779ea9-4a35-44b7-b02b-61e49784d0bd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ac_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGMT" metaid="e06ab7fc-72b8-431b-a687-75473d1666e8" name="phosphoglucomutase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 5.4.2.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e06ab7fc-72b8-431b-a687-75473d1666e8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.2.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FORtex" metaid="_183f64a9-9808-41f7-b371-de4aeedc25d6" name="formate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_183f64a9-9808-41f7-b371-de4aeedc25d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_for_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_for_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HSERTA" metaid="_68945973-e5de-40c3-8e9d-e68a33ce7a1d" name="homoserine_O_trans_acetylase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005140</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 2.3.1.31</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_68945973-e5de-40c3-8e9d-e68a33ce7a1d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005140"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hom_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_achms_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDPDRE" metaid="_152490d3-7cf1-43d2-88e2-0766d8ff78d4" name="dTDP_4_dehydrorhamnose_3_5_epimerase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026230</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 5.1.3.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_152490d3-7cf1-43d2-88e2-0766d8ff78d4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.3.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026230"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dtdp4d6dg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dtdp4d6dm_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HPPtpp" metaid="_99c34c8b-d2d9-4d75-ba6c-3a468da8bb20" name="3_hydroxypropionate_transport_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_99c34c8b-d2d9-4d75-ba6c-3a468da8bb20"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hpp_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACODA" metaid="_985eba82-78f5-458d-ac11-ad79cdef0c9a" name="acetylornithine_deacetylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025270</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 3.5.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description 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xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e67186e2-99f1-4d32-b020-4cf5c4182f6c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5px3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein5p3p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPNCL2" metaid="ac9799a1-9612-46a2-9fcf-eb8e479756a9" name="phosphopantothenate_cysteine_ligase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015430</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ac9799a1-9612-46a2-9fcf-eb8e479756a9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015430"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4ppan_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4ppcys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL160t2pp" metaid="_189bb35a-cccc-4787-93d1-376f4a96741d" name="fatty_acid_CoA_ligase__hexadecanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_189bb35a-cccc-4787-93d1-376f4a96741d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_hdca_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" 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</annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g6p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_6pgl_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR140x" metaid="_41865b96-d697-49fe-a260-28590901b124" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + 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</listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDPDRR" metaid="e4371e03-e60d-4744-a7bf-f8b7297e70bc" name="dTDP_4_dehydrorhamnose_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026220</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.133</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e4371e03-e60d-4744-a7bf-f8b7297e70bc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.133"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026220"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dtdp4d6dm_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dtdprmn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDPGDr" metaid="_581244d5-f3bb-46eb-9469-fd73d7ae2e78" name="UDPglucose_6_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018680</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.22</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_581244d5-f3bb-46eb-9469-fd73d7ae2e78"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.22"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_udpglcur_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLTGY1pp" metaid="_0296d9fc-1f09-40ab-8bf9-59a09c3ba31a" name="murein_lytic_transglycosylase__murein4p4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_003940 ) OR ( XFCFBP8418_019770 )</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0296d9fc-1f09-40ab-8bf9-59a09c3ba31a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019770"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein4p4p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PItex" metaid="_3de5ad84-d9ef-4513-b1a1-89ae96a9e24d" name="phosphate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3de5ad84-d9ef-4513-b1a1-89ae96a9e24d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pi_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INSEPIH" metaid="a8f99b02-7604-48a7-acc9-11a945e0f445" name="3D__3_5_4__trihydroxycyclohexane_1_2_dione_hydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a8f99b02-7604-48a7-acc9-11a945e0f445"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dkdepiins_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dglca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UM3PL" metaid="_99e0cf8b-7c15-4b53-9740-9c2a31a7e1d6" name="UDP_N_acetylmuramate_L_alanyl_gamma_D_glutamyl_meso_diaminopimelate_ligase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026060</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: 6.3.2.45</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_99e0cf8b-7c15-4b53-9740-9c2a31a7e1d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.45"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026060"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_LalaDgluMdap_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uamr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ugmd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHORTS" metaid="_0197284e-9752-40f7-a083-ab13da2f90e4" name="dihydroorotase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025380</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.5.2.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0197284e-9752-40f7-a083-ab13da2f90e4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.2.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025380"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhor_S_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cbasp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRASCS" metaid="_28e8db9c-a6c6-4596-8ddf-48b74c98cd53" name="phosphoribosylaminoimidazolesuccinocarboxamide_synthase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026780</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_28e8db9c-a6c6-4596-8ddf-48b74c98cd53"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026780"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_5aizc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_25aics_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLNtex" metaid="af01089c-0f17-484a-8e6b-ac20efef9a8f" name="L_glutamine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#af01089c-0f17-484a-8e6b-ac20efef9a8f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gln_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_mn2_e" metaid="_35d09179-85ad-4ed9-982a-a811ce8bfd7d" name="R_EX_mn2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_35d09179-85ad-4ed9-982a-a811ce8bfd7d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_mn2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP140abcpp" metaid="_64db8afd-c17f-4e58-8243-c385b91488b9" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C14_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_64db8afd-c17f-4e58-8243-c385b91488b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp140_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_arg_L_e" metaid="_4300546b-8d5e-44b0-a2a6-0312ee8de286" name="R_EX_arg_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4300546b-8d5e-44b0-a2a6-0312ee8de286"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_arg_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SCYSDS" metaid="a0191e6b-2355-48f8-956c-7a99c741781e" name="R_SCYSDS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002960 AND XFCFBP8418_025330</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.8.1.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a0191e6b-2355-48f8-956c-7a99c741781e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.8.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025330"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufse_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufsesh_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT160" metaid="_3b26aa1f-34ca-4dad-ad61-a2a6b9b9bdfe" name="1_hexadecanoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3b26aa1f-34ca-4dad-ad61-a2a6b9b9bdfe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_1hdecg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_palmACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AMPTASEPG" metaid="_23f1c327-2a1b-4fcf-90cc-bfefbde6302d" name="R_AMPTASEPG" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015310</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 3.4.11.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_23f1c327-2a1b-4fcf-90cc-bfefbde6302d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.11.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015310"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_progly_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT161" metaid="c64617ac-311d-4b54-aef2-376374955091" name="1_hexadec_7_enoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c64617ac-311d-4b54-aef2-376374955091"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_1hdec9eg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hdeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NNDPR" metaid="_83935dc5-8ee9-4dad-8a04-ec426c27cb6f" name="nicotinate_nucleotide_diphosphorylase__carboxylating_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000560</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.4.2.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_83935dc5-8ee9-4dad-8a04-ec426c27cb6f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000560"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_quln_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nicrnt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2O2tex" metaid="_4a3c5df9-fcc2-41ee-85d3-57088b40d9d5" name="hydrogen_peroxide_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4a3c5df9-fcc2-41ee-85d3-57088b40d9d5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SHK3Dr" metaid="_7406398b-f559-4d85-baa1-6920b86427ee" name="shikimate_dehydrogenase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006320</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.25</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7406398b-f559-4d85-baa1-6920b86427ee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006320"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3dhsk_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_skm_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACGK" metaid="_3aeb879a-defd-43b3-9081-935e4c82a433" name="acetylglutamate_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025260</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 2.7.2.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3aeb879a-defd-43b3-9081-935e4c82a433"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.2.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025260"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acglu_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acg5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XYLK2" metaid="_9e88a5e9-cd1c-4f71-90df-822c1c0b7c14" name="R_XYLK2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9e88a5e9-cd1c-4f71-90df-822c1c0b7c14"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xylu_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_xu5p_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MNt2pp" metaid="_15383220-6b0e-4974-b2b1-6ab3c9986d1b" name="manganese__Mn_2__transport_in_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025100</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_15383220-6b0e-4974-b2b1-6ab3c9986d1b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mn2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mn2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACGS" metaid="_134e5c0a-594b-48d7-ac9a-3c801410c386" name="N_acetylglutamate_synthase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025260</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: 2.3.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_134e5c0a-594b-48d7-ac9a-3c801410c386"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025260"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acglu_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR141x" metaid="c193df77-3f15-4f73-bf4a-295ff19c3f63" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c193df77-3f15-4f73-bf4a-295ff19c3f63"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_t3c7mrseACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUSAtpp" metaid="_2a1e61c7-0d81-43e9-92ba-81589d52587d" name="Fusidic_acid_transport_via_TolC_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2a1e61c7-0d81-43e9-92ba-81589d52587d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef 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<fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_fusa_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fusa_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HEX1" metaid="b51b0918-0366-46af-9051-2f9d45d9dce0" name="hexokinase__D_glucose_ATP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024690</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 2.7.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b51b0918-0366-46af-9051-2f9d45d9dce0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024690"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glc_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA141abcpp" metaid="af4f3f74-fbd6-48a3-b446-daf7dc9619e9" name="phosphatidate_transport_via_ABC_system__n_C14_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#af4f3f74-fbd6-48a3-b446-daf7dc9619e9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pa141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa141_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MG2tex" metaid="_010331b8-4e51-4805-adbd-540f39c725d8" name="magnesium__Mg_2__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_010331b8-4e51-4805-adbd-540f39c725d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mg2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mg2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UREAtpp" metaid="f4b7ccf6-301d-4907-9022-b862e6a29f46" name="Urea_transport_via_facilitate_diffusion__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020710</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f4b7ccf6-301d-4907-9022-b862e6a29f46"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_urea_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_urea_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS141pp" metaid="ab3b6156-8ad9-47af-bfcc-e942f8f7392c" name="cardiolipin_synthase__periplasmic__n_C14_1_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ab3b6156-8ad9-47af-bfcc-e942f8f7392c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pg141_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_clpn141_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDCPDP" metaid="f70432ed-67fa-4f14-9fa2-7dd667e8358a" name="undecaprenyl_diphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017720</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.6.1.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f70432ed-67fa-4f14-9fa2-7dd667e8358a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017720"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udcpdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udcpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYtex" metaid="_1663fe58-4112-48e2-8cef-d372f9bc3c20" name="glycine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1663fe58-4112-48e2-8cef-d372f9bc3c20"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gly_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gly_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CA2tex" metaid="_6f33b15b-8f42-472c-9e1e-5a417313088f" name="R_CA2tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6f33b15b-8f42-472c-9e1e-5a417313088f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ca2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ca2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LACZ" metaid="b6a2eacf-02ef-4757-b073-21d3fe545be6" name="R_LACZ" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007430</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.2.1.23</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b6a2eacf-02ef-4757-b073-21d3fe545be6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007430"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lcts_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glc_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gal_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPR" metaid="bed293e1-9ce9-416c-b0e5-fa5e6511d118" name="N_acetyl_g_glutamyl_phosphate_reductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025250</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 1.2.1.38</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bed293e1-9ce9-416c-b0e5-fa5e6511d118"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.38"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acg5sa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acg5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Bztex" metaid="_5b62e373-461f-4a8a-92f4-c11ee060f8aa" name="R_Bztex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5b62e373-461f-4a8a-92f4-c11ee060f8aa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_bz_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_bz_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XYLabcpp" metaid="_49d829e8-5877-4754-82ca-e6d254215d5b" name="R_XYLabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_019450</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49d829e8-5877-4754-82ca-e6d254215d5b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019450"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xyl_D_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xyl_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PFK_2" metaid="a62fee40-e915-4b75-9c4c-217c6b7d6451" name="R_PFK_2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026080</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a62fee40-e915-4b75-9c4c-217c6b7d6451"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tag6p_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_tagdp_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_ala_L_e" metaid="bd85b437-c114-49ec-9f03-45aab86b866e" name="R_EX_ala_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bd85b437-c114-49ec-9f03-45aab86b866e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_ala_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_A5PISO" metaid="_3dc617f3-cd4a-4062-9e2c-9ecde8ac30b4" name="arabinose_5_phosphate_isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003470</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 5.3.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3dc617f3-cd4a-4062-9e2c-9ecde8ac30b4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003470"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ru5p_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ara5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PFK_3" metaid="cf04e16a-842a-43d4-9bcc-7c6ce92d5f34" name="R_PFK_3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026080</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 2.7.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cf04e16a-842a-43d4-9bcc-7c6ce92d5f34"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_s7p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_s17bp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DMPPS" metaid="_0c69784a-fed3-4cee-b9ff-0b780aa4c2e9" name="1_hydroxy_2_methyl_2__E__butenyl_4_diphosphate_reductase__dmpp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004660</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.17.7.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0c69784a-fed3-4cee-b9ff-0b780aa4c2e9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.7.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004660"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2mb4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dmpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PTRCabcpp" metaid="e09fa73e-4241-4ee8-aace-6000c6002843" name="putrescine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.31</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e09fa73e-4241-4ee8-aace-6000c6002843"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ptrc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ptrc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LIPAabctex" metaid="d0901669-e727-4530-ae87-74cfa07d86b0" name="R_LIPAabctex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003500 AND XFCFBP8418_003510 AND XFCFBP8418_015320 AND XFCFBP8418_015330</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d0901669-e727-4530-ae87-74cfa07d86b0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015320"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo2lipidA_XF_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_kdo2lipidA_XF_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THFAT" metaid="a264d301-0933-454c-a596-0572f42082d6" name="Tetrahydrofolate_aminomethyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.1.2.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a264d301-0933-454c-a596-0572f42082d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_methf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5fthf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LIPOS" metaid="_2abbd216-a9dd-4510-8611-8ff11ef704b3" name="Lipoate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022360</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.8.1.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2abbd216-a9dd-4510-8611-8ff11ef704b3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.8.1.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amet_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4fe4s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_octapb_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2fe2s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dad_5_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lipopb_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe2_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PHEMEabcpp" metaid="_54264b6d-1559-46bf-93b1-caa233327906" name="R_PHEMEabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_005050 AND XFCFBP8418_005060 AND XFCFBP8418_005070 AND XFCFBP8418_005090</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_54264b6d-1559-46bf-93b1-caa233327906"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005050"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005060"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005070"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pheme_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pheme_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGMH" metaid="_425d6e2c-d506-41be-b57a-4943a04a2ff4" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_beta__1_4_N_acetylglucosaminidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021350</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_425d6e2c-d506-41be-b57a-4943a04a2ff4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021350"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhgm_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acgam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhm_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT180" metaid="_16fc294f-dc7e-4e90-9467-057ba96fdbad" name="1_octadecanoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_16fc294f-dc7e-4e90-9467-057ba96fdbad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_1odecg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ocdcaACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT181" metaid="ee2e90a2-a5c0-43d3-b432-96199a842fcd" name="1_octadec_7_enoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ee2e90a2-a5c0-43d3-b432-96199a842fcd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_octeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_1odec11eg3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLNabc" metaid="_83627658-def1-4564-a3c7-31ec67a96de5" name="R_GLNabc" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_83627658-def1-4564-a3c7-31ec67a96de5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD181" metaid="_9a7e24d6-b41f-423f-b110-002e27e6c5b9" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a7e24d6-b41f-423f-b110-002e27e6c5b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hcvac11eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_t3c11vaceACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD180" metaid="_056f92d6-acaa-44c3-90a4-c6a31f073669" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_056f92d6-acaa-44c3-90a4-c6a31f073669"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hoctaACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_toctd2eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE161abcpp" metaid="_77f7a92e-9927-4d64-b397-a4fcfa8138fe" name="phosphatidylethanolamine_transport_via_ABC_system__n_C16_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_77f7a92e-9927-4d64-b397-a4fcfa8138fe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe161_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GAMtex" metaid="ead08a95-0a7b-4d68-953d-b8dd8a7c3a6a" name="R_GAMtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ead08a95-0a7b-4d68-953d-b8dd8a7c3a6a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gam_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gam_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SERtex" metaid="a8ef9bf8-4075-4ca4-a656-34f3d41452c6" name="L_serine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a8ef9bf8-4075-4ca4-a656-34f3d41452c6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ser_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHFR" metaid="_1f19b72f-eeda-4abf-920a-07d6e7cffb38" name="dihydrofolate_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021150</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.5.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1f19b72f-eeda-4abf-920a-07d6e7cffb38"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021150"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHFS" metaid="_13a5fe0f-2844-417f-a8eb-1abf93b01f20" name="dihydrofolate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000740</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_13a5fe0f-2844-417f-a8eb-1abf93b01f20"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000740"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhpt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dhf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FEENTERtex" metaid="eacf7c47-e3ea-4bab-978d-9324629cf480" name="R_FEENTERtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012340</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eacf7c47-e3ea-4bab-978d-9324629cf480"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_enter_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_enter_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UPP3MT" metaid="fa32479a-0e66-4a55-a01e-631b6c2b6a7d" name="uroporphyrinogen_methyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010970</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.1.1.107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fa32479a-0e66-4a55-a01e-631b6c2b6a7d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010970"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amet_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_uppg3_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dscl_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ahcys_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XYLI1" metaid="cd735da3-d07f-42ea-9fa9-3f084052a9d4" name="R_XYLI1" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 5.3.1.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cd735da3-d07f-42ea-9fa9-3f084052a9d4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_xyl_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_xylu_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XYLK" metaid="_98a4c423-a9b2-42de-8f33-8674b923f3d6" name="xylulokinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_98a4c423-a9b2-42de-8f33-8674b923f3d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xylu_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_xu5p_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTHRDHpp" metaid="_84d8b4a0-718d-491a-84ac-f7e7523b2fad" name="glutathione_hydralase__periplasmic_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025410</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.4.19.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_84d8b4a0-718d-491a-84ac-f7e7523b2fad"> + 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Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5a476698-d09d-4f4c-a26c-fd193b04d412"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chtbs_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_chtbs_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MSAR" metaid="_98df4efe-41f3-49e7-9a7f-8987cb7ec2e3" name="malonic_semialdehyde_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015390</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.1.1.298</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_98df4efe-41f3-49e7-9a7f-8987cb7ec2e3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.298"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_msa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AMPMS2" metaid="_3b4b5613-333a-4920-aa78-cf2eed4f8370" name="4_amino_2_methyl_5_phosphomethylpyrimidine_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_016510 ) OR ( XFCFBP8418_027850 )</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.99.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3b4b5613-333a-4920-aa78-cf2eed4f8370"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.99.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027850"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_air_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_4ampm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDCP3pp" metaid="_573aff9f-f091-49a1-9e66-52e4879215fc" name="murein_D_D_carboxypeptidase__murein5p5p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_018620 ) OR ( XFCFBP8418_020420 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.16.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_573aff9f-f091-49a1-9e66-52e4879215fc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.16.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein5p4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARD2" metaid="ce7fd466-1fc5-4da8-a40d-5d70368ec9fa" name="R_ARD2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020240</p> + <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> + <p>EC_NUMBER: 1.13.11.54</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ce7fd466-1fc5-4da8-a40d-5d70368ec9fa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.13.11.54"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhmtp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4met2obut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_P5CD1p" metaid="_4ad84f32-ce3b-4630-8826-a3020d5140e2" name="1_pyrroline_5_carboxylate_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 1.5.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4ad84f32-ce3b-4630-8826-a3020d5140e2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_1pyr5c_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FOMETR" metaid="_1651cb82-c525-41cb-8f93-9e8bb6281ea6" name="R_FOMETR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001390</p> + <p>SUBSYSTEM: Folate_Metabolism</p> + <p>EC_NUMBER: 2.1.2.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1651cb82-c525-41cb-8f93-9e8bb6281ea6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5fthf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_methf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Kt2pp" metaid="_8718fecd-eee8-420f-a4be-3aeee5445ae4" name="potassium_transport_in_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000330 ) OR ( XFCFBP8418_016360 ) OR ( XFCFBP8418_027690 )</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8718fecd-eee8-420f-a4be-3aeee5445ae4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016360"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027690"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_k_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_k_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDPGDH" metaid="_8e841417-5fac-40c4-a287-87f2a0124da0" name="dTDPglucose_4_6_dehydratase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026250</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.46</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8e841417-5fac-40c4-a287-87f2a0124da0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.46"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dtdpglu_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dtdp4d6dg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYCLTt4ex" metaid="_5ce94b73-8d6a-4acf-815e-aec66fc9a7d0" name="R_GLYCLTt4ex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ce94b73-8d6a-4acf-815e-aec66fc9a7d0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyclt_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyclt_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DXPRIi" metaid="bffea5f3-c1e8-4d36-9200-91ba586e143d" name="1_deoxy_D_xylulose_reductoisomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024850</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.267</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bffea5f3-c1e8-4d36-9200-91ba586e143d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.267"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024850"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2me4p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASNTRS" metaid="_84fdebe3-555f-439e-87c7-5a4f3f5c0d31" name="R_ASNTRS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012160</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.22</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_84fdebe3-555f-439e-87c7-5a4f3f5c0d31"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.22"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012160"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asn_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaasn_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_asntrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYTBO3_4pp" metaid="_01dd1124-5e22-4fa3-8cee-1216e6e867e1" name="cytochrome_oxidase_bo3__ubiquinol_8__4_protons___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003690 AND XFCFBP8418_003700 AND XFCFBP8418_003710 AND XFCFBP8418_003720</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 1.10.3.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01dd1124-5e22-4fa3-8cee-1216e6e867e1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.10.3.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003710"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003700"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_o2_c" stoichiometry="0.5"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="4"/> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="4"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR120x" metaid="_635730d1-8a7f-4230-8bd9-0b5daef1f031" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_635730d1-8a7f-4230-8bd9-0b5daef1f031"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tddec2eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ddcaACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_EPS_XF_e" metaid="_5512fd43-90cc-4517-bc0a-5a90ba495950" name="R_DM_EPS_XF_e" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5512fd43-90cc-4517-bc0a-5a90ba495950"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_EPS_XF_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_dextrin_DEC_e_" metaid="d21c4e58-5421-466c-aa2b-2a2f493b5588" name="R_dextrin_DEC_e_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d21c4e58-5421-466c-aa2b-2a2f493b5588"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dextrin_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_14aglucan_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRD_L" metaid="_7951650e-b0b5-43cb-9716-1a425fd82b23" name="L_threonine_deaminase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017920</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 4.3.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7951650e-b0b5-43cb-9716-1a425fd82b23"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017920"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thr_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2obut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MAN1PT2r" metaid="f011fe9c-b111-4709-a072-ea9a04772109" name="R_MAN1PT2r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026210</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f011fe9c-b111-4709-a072-ea9a04772109"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026210"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_man1p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gdpmann_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE2t2pp" metaid="b471c729-206a-4924-bb5d-60b302adf7d5" name="iron__II__transport_in_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025100</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b471c729-206a-4924-bb5d-60b302adf7d5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fe2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fe2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DNTPPA" metaid="_4c7cc316-928b-4cca-b6ce-eee5a4d3a1a7" name="R_DNTPPA" reversible="false"> + 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+ <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_VALTRS" metaid="_59bfe82d-057b-4478-a969-8ad19fed6667" name="Valyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015270</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_59bfe82d-057b-4478-a969-8ad19fed6667"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015270"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_val_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaval_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_valtrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_man_e" metaid="c0b99037-9bd3-47d9-b2dd-d8746de1bfb6" name="R_EX_man_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c0b99037-9bd3-47d9-b2dd-d8746de1bfb6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_man_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DGLUISO" metaid="_5e26ce7d-687d-4b74-8e67-070b09d6f6a4" name="5_deoxy_D_glucuronic_acid_isomerase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5e26ce7d-687d-4b74-8e67-070b09d6f6a4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dglca_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dkglc_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACt4pp" metaid="_3fdc7bfe-8c80-414e-98a0-8c6be1009c89" name="Na__Acetate_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020610</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3fdc7bfe-8c80-414e-98a0-8c6be1009c89"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020610"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ac_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_na1_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_na1_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD161" metaid="_1629e996-4f3c-4656-9eac-7b497c254231" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1629e996-4f3c-4656-9eac-7b497c254231"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hcpalm9eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_t3c9palmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDEP1pp" metaid="c3ea7a13-1314-4e42-9915-b527a887f011" name="murein_D_D_endopeptidase__murein4px4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + 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name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1a5a8a65-35a7-4682-af84-23430d8143a7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hpalmACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tpalm2eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLtpp" metaid="_62636e29-a15d-4c1a-b82f-e7d10ec38aed" name="R_CLtpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_62636e29-a15d-4c1a-b82f-e7d10ec38aed"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cl_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cl_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_so4_e" metaid="c973e658-83ca-4cdb-884a-5b3695cd90e7" name="R_EX_so4_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c973e658-83ca-4cdb-884a-5b3695cd90e7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_so4_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROabcpp" metaid="d5fa365b-a304-44ee-ae06-93304242dd43" name="L_proline_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007680 AND XFCFBP8418_007690 ) OR ( XFCFBP8418_022120 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d5fa365b-a304-44ee-ae06-93304242dd43"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007690"/> + </fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022120"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pro_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR121x" metaid="_2b2701db-a16c-4397-bbb6-2fac326bbbaa" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C12_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2b2701db-a16c-4397-bbb6-2fac326bbbaa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_t3c5ddeceACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cddec5eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACMUMptspp" metaid="f7b75691-42ce-44e0-ade6-9e876276580c" name="R_ACMUMptspp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f7b75691-42ce-44e0-ade6-9e876276580c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acmum_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acmum6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TTRCYCtpp" metaid="f42c71ab-0b19-4b93-9518-684a533bc0fd" name="Tetracycline_transport_via_TolC_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f42c71ab-0b19-4b93-9518-684a533bc0fd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ttrcyc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ttrcyc_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GALt2" metaid="_70336839-2c1b-4ec1-95ff-43ed5dcb735c" name="R_GALt2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018650</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_70336839-2c1b-4ec1-95ff-43ed5dcb735c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_gal_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gal_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BTNt2tex" metaid="_17065047-6a16-4712-85c5-43d495f00b10" name="R_BTNt2tex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_17065047-6a16-4712-85c5-43d495f00b10"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_btn_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_btn_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BTNt2ipp" metaid="_4c4a9986-87b2-4f2c-9a86-7cbb89e5c394" name="R_BTNt2ipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4c4a9986-87b2-4f2c-9a86-7cbb89e5c394"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_btn_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_btn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAPGR" metaid="_752a8888-0aab-47a8-97bc-e69e63a4222b" name="UDP_N_acetylenolpyruvoylglucosamine_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012220</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.3.1.98</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_752a8888-0aab-47a8-97bc-e69e63a4222b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.98"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012220"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uaccg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uamr_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_St" metaid="_734bbc0a-8628-4df7-9cb5-6e444f23dcb6" name="R_St" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_734bbc0a-8628-4df7-9cb5-6e444f23dcb6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_s_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_s_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ICL" metaid="_37a917fc-b955-4189-aed5-76c371c3896e" name="Isocitrate_lyase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Anaplerotic_Reactions</p> + <p>EC_NUMBER: 4.1.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_37a917fc-b955-4189-aed5-76c371c3896e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_icit_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glx_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ATPHs" metaid="_9c2c5156-ceed-4286-a628-a988c5de0fbe" name="R_ATPHs" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.5.4.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9c2c5156-ceed-4286-a628-a988c5de0fbe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_itp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK4" metaid="_8e6b4881-d61c-4ae2-9d38-348c4a9acc87" name="nucleoside_diphosphate_kinase__ATP_dTDP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8e6b4881-d61c-4ae2-9d38-348c4a9acc87"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dtdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dttp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACLS" metaid="f6e3c3c3-5844-456c-89fa-a9cdbd61623d" name="acetolactate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017900 AND XFCFBP8418_017910</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 2.2.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f6e3c3c3-5844-456c-89fa-a9cdbd61623d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.2.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_alac_S_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK5" metaid="_8dfdec93-4f40-4c39-9f3c-d96e30952e65" name="nucleoside_diphosphate_kinase__ATP_dGDP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8dfdec93-4f40-4c39-9f3c-d96e30952e65"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dgdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dgtp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SSALy" metaid="_8f4264f6-9e76-4632-9aec-d02cebd4e009" name="R_SSALy" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.2.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8f4264f6-9e76-4632-9aec-d02cebd4e009"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sucsal_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MG2t3_2pp" metaid="_24a2065d-926c-4daf-a5a3-c451a3bdd574" name="R_MG2t3_2pp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_24a2065d-926c-4daf-a5a3-c451a3bdd574"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mg2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mg2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGMt2pp" metaid="_499cd0da-ac38-445f-be2c-0fd37860bb0d" name="GlcNAc_anhMurNAc_transport_in_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015550</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_499cd0da-ac38-445f-be2c-0fd37860bb0d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_anhgm_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK2" metaid="fb8b0ac5-9d06-4124-8cdf-31744363fa53" name="nucleoside_diphosphate_kinase__ATP_UDP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fb8b0ac5-9d06-4124-8cdf-31744363fa53"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGt2rpp" metaid="ccccc1d4-b6f1-49bf-85f7-6f7c444a7c54" name="R_ARGt2rpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020210</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ccccc1d4-b6f1-49bf-85f7-6f7c444a7c54"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020210"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_arg_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK3" metaid="_6937dd0f-e67b-4fa0-9e97-a7fa4f63c3a6" name="nucleoside_diphosphate_kinase__ATP_CDP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6937dd0f-e67b-4fa0-9e97-a7fa4f63c3a6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHORS" metaid="_6a897d1f-49f8-4da7-bd88-a7f00cd4ff26" name="chorismate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003900</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.2.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6a897d1f-49f8-4da7-bd88-a7f00cd4ff26"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3psme_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_chor_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THYMt3pp" metaid="_0f387fca-8fc8-4707-9393-ce4bf257835e" name="R_THYMt3pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0f387fca-8fc8-4707-9393-ce4bf257835e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thym_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_thym_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK1" metaid="_5ff4275e-3068-414e-9825-963bd0aaaace" name="nucleoside_diphosphate_kinase__ATP_GDP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ff4275e-3068-414e-9825-963bd0aaaace"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHORM" metaid="c9ef9723-b4f3-45c4-b434-b1d82a17f661" name="chorismate_mutase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021090</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 5.4.99.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c9ef9723-b4f3-45c4-b434-b1d82a17f661"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.99.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021090"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chor_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pphn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SLNTtex" metaid="_59bfd58d-db80-4046-87fa-07e1fe20a2e9" name="R_SLNTtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_59bfd58d-db80-4046-87fa-07e1fe20a2e9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_slnt_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_slnt_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_lys_L_e" metaid="_34b3bd5b-8073-429c-8023-21cc0a758eb2" name="R_EX_lys_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_34b3bd5b-8073-429c-8023-21cc0a758eb2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_lys_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK8" metaid="df515a47-fefa-4505-b7b3-5dd650efff0a" name="nucleoside_diphosphate_kinase__ATP_dADP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#df515a47-fefa-4505-b7b3-5dd650efff0a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dadp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_datp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK6" metaid="_1cf12621-15ab-45dc-8978-5853bee37832" name="nucleoside_diphosphate_kinase__ATP_dUDP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1cf12621-15ab-45dc-8978-5853bee37832"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dudp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dutp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK7" metaid="_6ae55dbd-0ec3-48a3-87e5-aeab9240820a" name="nucleoside_diphosphate_kinase__ATP_dCDP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6ae55dbd-0ec3-48a3-87e5-aeab9240820a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dcdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD141" metaid="_90032cc8-9ce7-4a28-933b-85c43b405895" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_90032cc8-9ce7-4a28-933b-85c43b405895"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hcmrs7eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_t3c7mrseACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ETFDH" metaid="fa3dc8e0-7469-4e03-9a23-76f958d313c6" name="Electron_transferring_flavoprotein_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022160 AND XFCFBP8418_026260 AND XFCFBP8418_026270</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 1.5.5.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fa3dc8e0-7469-4e03-9a23-76f958d313c6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.5.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026260"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026270"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_etfrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_etfox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD140" metaid="ff0ba4ff-1b01-455b-b108-acf6ac66253b" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ff0ba4ff-1b01-455b-b108-acf6ac66253b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hmrsACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tmrs2eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDH2" metaid="e1d8bd90-d0d4-467b-8a79-3b5c9ac34ffd" name="Malate_dehydrogenase__ubiquinone_8_as_acceptor_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009850</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 1.1.5.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e1d8bd90-d0d4-467b-8a79-3b5c9ac34ffd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.5.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009850"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mal_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR181tipp" metaid="_23a8f60b-f236-41c5-930b-37dcce5a346b" name="R_12DGR181tipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_23a8f60b-f236-41c5-930b-37dcce5a346b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr181_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_12dgr181_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD9" metaid="d8eb237f-c639-4696-b1d4-d9ed1d3f2ce7" name="5__nucleotidase__GMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d8eb237f-c639-4696-b1d4-d9ed1d3f2ce7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gsn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PMPK" metaid="_748158b4-58e6-4058-b881-81fe9214c5f9" name="phosphomethylpyrimidine_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006340</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.4.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_748158b4-58e6-4058-b881-81fe9214c5f9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4ampm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2mahmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD5" metaid="b12d5780-c02d-4806-a0aa-ae388924f32e" name="5__nucleotidase__dTMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b12d5780-c02d-4806-a0aa-ae388924f32e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dtmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_thymd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTHPe" metaid="_07676509-b6dc-4312-b61e-6d00cf2d7843" name="glutathione_peroxidase__e_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_016490 ) OR ( XFCFBP8418_027830 )</p> + <p>SUBSYSTEM: Superoxide_radicals_degradation</p> + <p>EC_NUMBER: 1.11.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_07676509-b6dc-4312-b61e-6d00cf2d7843"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.11.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027830"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016490"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gthrd_e" stoichiometry="2"/> + <speciesReference constant="true" species="M_h2o2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gthox_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_e" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD6" metaid="b2e4836e-8385-49c1-bce5-d7b29f6708a9" name="5__nucleotidase__dAMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b2e4836e-8385-49c1-bce5-d7b29f6708a9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_damp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dad_2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD7" metaid="ef706ea1-e25a-4328-8f3e-3adff8714efc" name="5__nucleotidase__AMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ef706ea1-e25a-4328-8f3e-3adff8714efc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD8" metaid="_8a0f2edf-f196-43d9-bafe-75bb488fbe30" name="5__nucleotidase__dGMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8a0f2edf-f196-43d9-bafe-75bb488fbe30"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dgmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dgsn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD1" metaid="_2af412c4-0b5e-4ea6-a36d-04b8d824a7c2" name="5__nucleotidase__dUMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2af412c4-0b5e-4ea6-a36d-04b8d824a7c2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dump_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_duri_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD2" metaid="_44c95b00-242e-492b-b9ec-734ffe6b1499" name="5__nucleotidase__UMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_44c95b00-242e-492b-b9ec-734ffe6b1499"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_uri_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD3" metaid="_3fa0db80-f0dd-4110-b165-68ae0a69d35a" name="5__nucleotidase__dCMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3fa0db80-f0dd-4110-b165-68ae0a69d35a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dcmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dcyt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD4" metaid="ea65d95f-0616-4577-92a3-5925cbdc1c70" name="5__nucleotidase__CMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ea65d95f-0616-4577-92a3-5925cbdc1c70"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + 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</notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b5bd87e7-9dc6-46dd-8b15-72d3bba6ccee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.3.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dann_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dtbt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE3Gabcpp" metaid="_0a9e571a-729f-4b63-a847-32f19c7e41dd" name="R_FE3Gabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012840</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0a9e571a-729f-4b63-a847-32f19c7e41dd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef 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id="R_H2SO" metaid="db507ffb-2fd9-443e-9dfc-62c2a6653f5f" name="R_H2SO" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#db507ffb-2fd9-443e-9dfc-62c2a6653f5f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_so4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TMDS" metaid="_00cd6cef-032d-4134-8100-858239e9af41" name="thymidylate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021160</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.1.1.45</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_00cd6cef-032d-4134-8100-858239e9af41"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.45"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021160"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dump_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dtmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PDX5PS" metaid="_8bf4a65b-e5cb-4699-a6f4-fa2a050deccc" name="Pyridoxine_5__phosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010890 AND XFCFBP8418_014620</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8bf4a65b-e5cb-4699-a6f4-fa2a050deccc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014620"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010890"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_phthr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pdx5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSERTr" metaid="_880ff223-84ce-40fd-b6b5-464a0a327b33" name="phosphoserine_transaminase_reversible" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021100</p> + <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.52</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_880ff223-84ce-40fd-b6b5-464a0a327b33"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.52"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3php_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pser_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SPMS" metaid="_89460829-87c3-46b3-8c6c-595f9fe28999" name="spermidine_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015370</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 2.5.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_89460829-87c3-46b3-8c6c-595f9fe28999"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015370"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ametam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ptrc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5mta_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_spmd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGN" metaid="_2a015dd2-0581-48c4-9594-0a49331c188c" name="arginase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 3.5.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2a015dd2-0581-48c4-9594-0a49331c188c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_orn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_urea_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CTPS2" metaid="_13da69ab-0d1c-4f42-bee4-2a1d39160097" name="CTP_synthase__glutamine_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022240</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 6.3.4.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_13da69ab-0d1c-4f42-bee4-2a1d39160097"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ATPPRTr" metaid="_0c686895-bb92-4259-b366-6864383857b5" name="ATP_phosphoribosyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020330</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 2.4.2.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0c686895-bb92-4259-b366-6864383857b5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020330"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prbatp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDCP5pp" metaid="ffdcc002-2deb-49f2-9bb9-e9e6a9bfcd36" name="murein_D_D_carboxypeptidase__murein5p3p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_018620 ) OR ( XFCFBP8418_020420 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.16.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ffdcc002-2deb-49f2-9bb9-e9e6a9bfcd36"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.16.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5p3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4p3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PDX5PO" metaid="_803d8994-51db-41c0-8563-f8707cce7608" name="pyridoxine_5__phosphate_oxidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004150</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.4.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_803d8994-51db-41c0-8563-f8707cce7608"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.4.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004150"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pdx5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pydx5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROD2" metaid="b5d69dbf-275a-4438-95e0-a0da3d4b00f3" name="Proline_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 1.5.99.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b5d69dbf-275a-4438-95e0-a0da3d4b00f3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.99.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_1pyr5c_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_APCS" metaid="f189ca07-aa4c-49ba-a22a-686d1706b5f5" name="R_APCS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015370</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 2.5.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f189ca07-aa4c-49ba-a22a-686d1706b5f5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015370"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ametam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_15dap_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5mta_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_na15dap_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MTHFD" metaid="db141efd-85a3-4f46-b622-01f77e5817da" name="methylenetetrahydrofolate_dehydrogenase__NADP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004790</p> + <p>SUBSYSTEM: Folate_Metabolism</p> + <p>EC_NUMBER: 1.5.1.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#db141efd-85a3-4f46-b622-01f77e5817da"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004790"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_methf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MTHFC" metaid="_5fa06a26-166c-4fa3-93a0-1d5698a8b5b3" name="methenyltetrahydrofolate_cyclohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004790</p> + <p>SUBSYSTEM: Folate_Metabolism</p> + <p>EC_NUMBER: 3.5.4.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5fa06a26-166c-4fa3-93a0-1d5698a8b5b3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004790"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_methf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_10fthf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OHPBAT" metaid="_0b00da5e-5263-4a0f-8d84-3be9ce2e27c3" name="O_Phospho_4_hydroxy_L_threonine_2_oxoglutarate_aminotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021100</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.6.1.52</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0b00da5e-5263-4a0f-8d84-3be9ce2e27c3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.52"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ohpb_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_phthr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP141pp" metaid="ae795ce0-e733-4557-8d0f-fdd8bc63b4e8" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ae795ce0-e733-4557-8d0f-fdd8bc63b4e8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp141_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg141_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AP5AH" metaid="_83169f0e-2340-4479-9035-d6c6f4bbc140" name="Ap5A_hydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019500</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.61</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_83169f0e-2340-4479-9035-d6c6f4bbc140"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.61"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019500"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ap5a_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM4PH" metaid="_19997018-7609-4bb6-84a0-d013de71994b" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tetrapeptide_beta__1_4_N_acetylglucosaminidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021350</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_19997018-7609-4bb6-84a0-d013de71994b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021350"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_anhgm4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhm4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acgam_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TREptspp" metaid="_533ae11a-b048-4dc4-99d8-e11df0190fc8" name="R_TREptspp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND No_Assignment2 AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_533ae11a-b048-4dc4-99d8-e11df0190fc8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment2"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tre_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tre6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTHOr" metaid="_5200a072-a335-4b28-bb9d-b0006470ef4d" name="glutathione_oxidoreductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002170</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.8.1.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5200a072-a335-4b28-bb9d-b0006470ef4d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002170"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gthox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACGAMT" metaid="be79aead-a49a-4c67-903c-874f23419c47" name="R_ACGAMT" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004820</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#be79aead-a49a-4c67-903c-874f23419c47"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udcpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uacgam_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_unaga_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR100x" metaid="f47bdb4a-719a-4aee-8dfa-7596f47b6ed8" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C10_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f47bdb4a-719a-4aee-8dfa-7596f47b6ed8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tdec2eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dcaACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ZN2tex" metaid="ab2f5868-2024-44b9-887b-ccf667eb087f" name="R_ZN2tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ab2f5868-2024-44b9-887b-ccf667eb087f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_zn2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_zn2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NO3tex" metaid="e1734774-24bd-4670-b857-68c7d7be46ae" name="nitrate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e1734774-24bd-4670-b857-68c7d7be46ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_no3_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_no3_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ANHMK" metaid="_9ad62f87-a3a2-479a-8241-0e7f5a57ad1a" name="1_6_anhydrous_N_Acetylmuramate_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015560</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: 2.7.1.170</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9ad62f87-a3a2-479a-8241-0e7f5a57ad1a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.170"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015560"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhm_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acmum6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MNabc_1" metaid="_04da6e87-f3dc-4788-93c3-c5599974807b" name="R_MNabc_1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: 3.6.3.35</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_04da6e87-f3dc-4788-93c3-c5599974807b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.35"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mn2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mn2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DCTPD2" metaid="_24b63732-de2d-45f4-a436-4d69eb4e5058" name="dCTP_deaminase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011560</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.5.4.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_24b63732-de2d-45f4-a436-4d69eb4e5058"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011560"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SPMDtex" metaid="_9e27748f-20df-4e06-8900-612653c342f6" name="spermidine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009840</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: 3.6.3.31</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9e27748f-20df-4e06-8900-612653c342f6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_spmd_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_spmd_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE3tex" metaid="_1957b4ed-7e5b-4ac0-bd1f-6b1c41ba35bc" name="iron__III__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1957b4ed-7e5b-4ac0-bd1f-6b1c41ba35bc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fe3_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fe3_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACONTa" metaid="_67a44e2f-c272-4145-a365-5d7992ea2a59" name="aconitase__half_reaction_A__Citrate_hydro_lyase_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_022570 ) OR ( XFCFBP8418_025910 ) OR ( XFCFBP8418_025940 )</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 4.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_67a44e2f-c272-4145-a365-5d7992ea2a59"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022570"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025940"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cit_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acon_C_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACONTb" metaid="ddd85e75-afbd-47f2-9d5f-910734316be2" name="aconitase__half_reaction_B__Isocitrate_hydro_lyase_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_022570 ) OR ( XFCFBP8418_025910 ) OR ( XFCFBP8418_025940 )</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 4.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ddd85e75-afbd-47f2-9d5f-910734316be2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022570"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025940"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acon_C_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_icit_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUt2rpp" metaid="_09da3e46-6d4a-456a-b166-a0a0494d351b" name="R_GLUt2rpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000650</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_09da3e46-6d4a-456a-b166-a0a0494d351b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR160" metaid="c697ce5f-c134-46b1-b633-71634fdf17b9" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c697ce5f-c134-46b1-b633-71634fdf17b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3opalmACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hpalmACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_pro_L_e" metaid="_836b4621-e7d2-45ac-9d3a-a6be05a162a6" name="R_EX_pro_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_836b4621-e7d2-45ac-9d3a-a6be05a162a6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_pro_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR161" metaid="eba2b6d8-8b0f-4470-8be0-509695ddd781" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eba2b6d8-8b0f-4470-8be0-509695ddd781"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3ocpalm9eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hcpalm9eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_K2L4Aabctex" metaid="_8f58e924-4608-434e-9a13-13ca1c09b76f" name="R_K2L4Aabctex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003500 AND XFCFBP8418_003510 AND XFCFBP8418_015320 AND XFCFBP8418_015330</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8f58e924-4608-434e-9a13-13ca1c09b76f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015320"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo2lipid4_XF_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo2lipid4_XF_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TRDR" metaid="_84967ad6-6731-4f9e-bf52-1e7d8087edc7" name="thioredoxin_reductase__NADPH_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003190 AND XFCFBP8418_013260</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 1.8.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_84967ad6-6731-4f9e-bf52-1e7d8087edc7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003190"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CU1Opp" metaid="_2df0f7fa-a7cb-4f3e-a134-2a79c561a3be" name="Cuprous_Oxidase__Cu_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015250</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: 1.16.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2df0f7fa-a7cb-4f3e-a134-2a79c561a3be"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.16.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cu_p" stoichiometry="4"/> + <speciesReference constant="true" species="M_o2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="4"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cu2_p" stoichiometry="4"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT161" metaid="_8743f99e-7c52-4a20-b3f9-ebd7f69a6f96" name="R_G3PAT161" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8743f99e-7c52-4a20-b3f9-ebd7f69a6f96"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hdeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_1hdec9eg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPKr" metaid="_296dbd06-b104-4ade-8554-7fb5947ef74f" name="polyphosphate_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012370</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 2.7.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_296dbd06-b104-4ade-8554-7fb5947ef74f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012370"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CDPMEK" metaid="_3d262e90-fef9-4e40-9171-7fa2af701e00" name="4__cytidine_5__diphospho__2_C_methyl_D_erythritol_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012890</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.1.148</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d262e90-fef9-4e40-9171-7fa2af701e00"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.148"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4c2me_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2p4c2me_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT160" metaid="_0d791462-eb70-44f7-9e4d-3b6f0b5916bc" name="R_G3PAT160" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0d791462-eb70-44f7-9e4d-3b6f0b5916bc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_palmACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_1hdecg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR40x" metaid="bd1217d3-2f78-4182-a09d-af56c64865f2" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C4_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bd1217d3-2f78-4182-a09d-af56c64865f2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_but2eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_butACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALR2" metaid="_1e88fcb4-f43e-4d83-a5ff-c5975edf1664" name="aldose_reductase__methylglyoxal_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_008650</p> + <p>SUBSYSTEM: Methylglyoxal_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1e88fcb4-f43e-4d83-a5ff-c5975edf1664"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mthgxl_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acetol_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ThDPAT" metaid="_80a4c7df-ab7a-4bca-9b2f-19945f08db4e" name="R_ThDPAT" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_80a4c7df-ab7a-4bca-9b2f-19945f08db4e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thmpp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_athtp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IGPS" metaid="_1bc1f9b0-e8fa-4073-8597-eb6a18fa2e58" name="indole_3_glycerol_phosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026720</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.1.1.48</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1bc1f9b0-e8fa-4073-8597-eb6a18fa2e58"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.48"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026720"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2cpr5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ig3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HPPtex" metaid="_29dee993-41e5-4ed3-aa67-0e67e024cdc7" name="3_hydroxypropionate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_29dee993-41e5-4ed3-aa67-0e67e024cdc7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hpp_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3hpp_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INDOLEt2pp" metaid="f09cdaf4-7b4c-4c97-b788-b1022184b24c" name="R_INDOLEt2pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f09cdaf4-7b4c-4c97-b788-b1022184b24c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_indole_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_indole_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALAALAabcpp" metaid="_1463c0d7-56a1-436e-9e50-55a7b363bff0" name="D_alanyl_D_alanine__DalaDala__transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1463c0d7-56a1-436e-9e50-55a7b363bff0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_alaala_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_alaala_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S4FE4SR" metaid="a39e83c4-8130-4285-a95c-5019026fba5d" name="R_S4FE4SR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a39e83c4-8130-4285-a95c-5019026fba5d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufbcd_2fe2s2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_sufbcd_4fe4s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SLCYSS" metaid="f39f7141-fb0d-4e12-9e6b-855ed0a8b96a" name="R_SLCYSS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006490 ) OR ( XFCFBP8418_010980 )</p> + <p>SUBSYSTEM: Cystein_Metabolism</p> + <p>EC_NUMBER: 2.5.1.47</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f39f7141-fb0d-4e12-9e6b-855ed0a8b96a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.47"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010980"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006490"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tsul_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acser_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_scys_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2Stex" metaid="_9a4a4643-63be-43f7-8b3a-6c7f06817bc9" name="Hydrogen_sulfide_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a4a4643-63be-43f7-8b3a-6c7f06817bc9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2s_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2s_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S4FE4ST" metaid="_2a1716f0-15c5-4cc4-99a2-b839a2e051ed" name="R_S4FE4ST" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950 AND XFCFBP8418_012150</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2a1716f0-15c5-4cc4-99a2-b839a2e051ed"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012150"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_sufbcd_4fe4s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="4"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4fe4s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufbcd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TREtex" metaid="bbe09276-0f1b-463f-a7f8-af3a0e0888f4" name="trehalose_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bbe09276-0f1b-463f-a7f8-af3a0e0888f4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tre_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_tre_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_ca2_e" metaid="_5cb9433a-1034-41dc-9665-2169a037d64e" name="R_EX_ca2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5cb9433a-1034-41dc-9665-2169a037d64e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_ca2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EDTXS3XF" metaid="_0d0e9caf-e261-478c-aa35-a28ea1bbabe7" name="R_EDTXS3XF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004060 ) OR ( XFCFBP8418_015020 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.-</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0d0e9caf-e261-478c-aa35-a28ea1bbabe7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.-"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004060"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015020"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hddecACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo2lipid4HL_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_kdo2lipidA_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA161abcpp" metaid="c05fbc20-f6ee-4d43-a4da-d019b0a17c45" name="phosphatidate_transport_via_ABC_system__n_C16_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c05fbc20-f6ee-4d43-a4da-d019b0a17c45"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa161_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR140" metaid="_3f7cf43a-bec4-4e63-bcc4-6321a02571c1" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3f7cf43a-bec4-4e63-bcc4-6321a02571c1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3omrsACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hmrsACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR180tipp" metaid="bdba66cf-d220-480a-884e-50c672f09150" name="R_12DGR180tipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bdba66cf-d220-480a-884e-50c672f09150"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr180_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_12dgr180_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GMPS2" metaid="_8fe6e735-7903-4534-8398-e8ee0a6624c6" name="GMP_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004770</p> + <p>SUBSYSTEM: Purine_biosynthesis</p> + <p>EC_NUMBER: 6.3.5.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8fe6e735-7903-4534-8398-e8ee0a6624c6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.5.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004770"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_gmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR141" metaid="_49728e10-3c78-43f6-a132-ea7cc9eb9fbb" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49728e10-3c78-43f6-a132-ea7cc9eb9fbb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3ocmrs7eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hcmrs7eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL180t2pp" metaid="eb1f72a2-ac74-4a5c-b7bc-9b29c71d87f6" name="fatty_acid_CoA_ligase__octadecanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eb1f72a2-ac74-4a5c-b7bc-9b29c71d87f6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ocdca_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_stcoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PYAM5POr" metaid="_6a4ff0cf-2525-49ac-8234-77e07699f8b0" name="pyridoxamine_5__phosphate_oxidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004150</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.4.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6a4ff0cf-2525-49ac-8234-77e07699f8b0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.4.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004150"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyam5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pydx5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUabcpp" metaid="_8e7235ba-0cae-487d-9a6c-5324972d6fdf" name="L_glutamate_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007600</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.21</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8e7235ba-0cae-487d-9a6c-5324972d6fdf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.21"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007600"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT140" metaid="_28833569-f07f-40e5-b678-fa48db25b28a" name="R_G3PAT140" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_28833569-f07f-40e5-b678-fa48db25b28a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_myrsACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_1tdecg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SO3tex" metaid="_18616028-27c7-4c6b-af75-6cc5f4b1bf92" name="R_SO3tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_18616028-27c7-4c6b-af75-6cc5f4b1bf92"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_so3_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_so3_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT141" metaid="_0ecee537-dc8c-47f3-83c2-37fde71aca86" name="R_G3PAT141" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0ecee537-dc8c-47f3-83c2-37fde71aca86"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_1tdec7eg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_zn2_e" metaid="_4159c7ec-d404-4f29-8f77-4aeb035a94d3" name="R_EX_zn2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4159c7ec-d404-4f29-8f77-4aeb035a94d3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_zn2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ICITt_kt" metaid="f31ef274-0ba9-42bf-8ec3-36b15d0f53ae" name="R_ICITt_kt" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025570</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f31ef274-0ba9-42bf-8ec3-36b15d0f53ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_icit_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_icit_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS161pp" metaid="_330389ae-5902-43a7-bbb8-8539ca5d20f6" name="cardiolipin_synthase__periplasmic__n_C16_1_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_330389ae-5902-43a7-bbb8-8539ca5d20f6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pg161_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_clpn161_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2Otpp" metaid="_428d2359-fbda-446b-968a-347363e63c46" name="H2O_transport_via_diffusion__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_428d2359-fbda-446b-968a-347363e63c46"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYOX3" metaid="f55a5957-c961-408b-8b81-cefe28454487" name="R_GLYOX3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023680</p> + <p>SUBSYSTEM: Methylglyoxal_Metabolism</p> + <p>EC_NUMBER: 4.2.1.130</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f55a5957-c961-408b-8b81-cefe28454487"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.130"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mthgxl_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_lac_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_mg2_e" metaid="_7aad2af7-c5ef-42cf-b7dc-a845bf767d19" name="R_EX_mg2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7aad2af7-c5ef-42cf-b7dc-a845bf767d19"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_mg2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHGLYH" metaid="_9db97772-9661-4bce-9fe2-80cb8f3ee38f" name="R_DHGLYH" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9db97772-9661-4bce-9fe2-80cb8f3ee38f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhgly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glx_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DB4PS" metaid="_421cf543-364a-4062-846b-f8f45f1a69a1" name="3_4_Dihydroxy_2_butanone_4_phosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009770</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.99.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_421cf543-364a-4062-846b-f8f45f1a69a1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.99.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009770"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ru5p_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_db4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDCP2App" metaid="_80658f59-ff34-4f09-b691-7484e8d693a4" name="murein_L_D_carboxypeptidase__murein5p5p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.17.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_80658f59-ff34-4f09-b691-7484e8d693a4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein5p3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_alaala_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACACT1r" metaid="_87eb8bca-e417-4d10-8773-fb67586b7b3c" name="acetyl_CoA_C_acetyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_87eb8bca-e417-4d10-8773-fb67586b7b3c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_aacoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP181pp" metaid="_27e14e08-7e2a-4bd7-b2c1-f25770fdc7b2" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_27e14e08-7e2a-4bd7-b2c1-f25770fdc7b2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp181_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg181_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FRUpts2" metaid="_49070d4c-f0be-4db8-8494-ed3d451df624" name="R_FRUpts2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49070d4c-f0be-4db8-8494-ed3d451df624"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fru_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACHBS" metaid="_789c92ae-6b7b-4d83-ad40-4db45c2628ad" name="2_aceto_2_hydroxybutanoate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017900 AND XFCFBP8418_017910</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 2.2.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_789c92ae-6b7b-4d83-ad40-4db45c2628ad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.2.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2obut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2ahbut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHTNABCt" metaid="_66ab3ddb-b37e-4479-a284-4e4856416781" name="R_CHTNABCt" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_66ab3ddb-b37e-4479-a284-4e4856416781"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chtbs_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_chtbs_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA120abcpp" metaid="e5726ea6-018f-4fa7-a709-2a4af8810ec5" name="phosphatidate_transport_via_ABC_system__n_C12_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e5726ea6-018f-4fa7-a709-2a4af8810ec5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa120_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa120_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HISDr" metaid="_2d6e0f6b-14f9-4471-895d-0846b763cb9f" name="histidase_r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 4.3.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2d6e0f6b-14f9-4471-895d-0846b763cb9f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_his_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_urcan_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM3Pt2pp" metaid="_18440f86-dad4-41f8-8cfb-e015c27965aa" name="GlcNAc_anhMurNAc_tripeptide_transport_in_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015550</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_18440f86-dad4-41f8-8cfb-e015c27965aa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhgm3p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ANPRT" metaid="e154ca2e-3890-47e1-aea1-87fc24c96233" name="anthranilate_phosphoribosyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026730</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 2.4.2.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e154ca2e-3890-47e1-aea1-87fc24c96233"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026730"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_anth_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pran_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AHSERL3" metaid="_28ebcd3c-2de8-4221-9952-56d90ca3e156" name="R_cysteine_synthase__Selenide_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006490 ) OR ( XFCFBP8418_010590 ) OR ( XFCFBP8418_010980 )</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_28ebcd3c-2de8-4221-9952-56d90ca3e156"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010590"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010980"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006490"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acser_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_seln_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_selcys_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AHSERL2" metaid="_1e0210a1-ddb2-4251-99e6-242396b57ff1" name="R_AHSERL2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010590</p> + <p>SUBSYSTEM: Cystein_Metabolism</p> + <p>EC_NUMBER: 2.5.1.49</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1e0210a1-ddb2-4251-99e6-242396b57ff1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.49"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_achms_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2s_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hcys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G2PP" metaid="_889da4e8-8566-4f3f-acb8-97291ae9294b" name="glycerol_2_phosphate_phosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005240</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.1.3.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_889da4e8-8566-4f3f-acb8-97291ae9294b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/ 3.1.3.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc2p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PHEMEAS" metaid="_4dff57e7-ed27-4653-9ce4-88dfebdec7d8" name="putative_hemeA_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003990</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4dff57e7-ed27-4653-9ce4-88dfebdec7d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003990"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hemeO_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hemeA_1_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_fe2_e" metaid="ff3238a4-c949-47c0-91fd-b6300ab90ff7" name="R_EX_fe2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ff3238a4-c949-47c0-91fd-b6300ab90ff7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_fe2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR120" metaid="_73a75cd3-61a7-4f57-9e50-0270d6928984" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_73a75cd3-61a7-4f57-9e50-0270d6928984"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3oddecACP_c" stoichiometry="1"/> + 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xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8f1551cd-700d-4fa8-a5ac-06562bd1596f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdtdec7eg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HIStex" metaid="d880ccde-0889-4968-9fb8-f43fb3d638f2" name="L_histidine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d880ccde-0889-4968-9fb8-f43fb3d638f2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_his_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + 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rdf:resource="http://identifiers.org/ec-code/4.2.1.44"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2ins_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dkdepiins_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL181t2pp" metaid="_4e19d812-c78a-431b-a118-69204652bfc4" name="fatty_acid_CoA_ligase__octadecenoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4e19d812-c78a-431b-a118-69204652bfc4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ocdcea_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference 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xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e3ead820-9549-47da-8f2e-b7b2d114056b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009760"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dmlz_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ribflv_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4r5au_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_ni2_e" metaid="e41c8663-235b-4f95-b953-a39c06455791" name="R_EX_ni2_e" reversible="true"> + <notes> 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name="2_C_methyl_D_erythritol_2_4_cyclodiphosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022190</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.6.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7bbec3fd-1e0b-4758-95bf-4186e227c611"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.6.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022190"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2p4c2me_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2mecdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OXOGAH" metaid="_148cbb5c-87ce-48fd-80c2-b6eb893a5bc2" name="R_OXOGAH" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005030</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 3.5.1.111</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_148cbb5c-87ce-48fd-80c2-b6eb893a5bc2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.111"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2ogm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_6PDDGLUCA" metaid="aabd4ea8-d600-4f18-98d7-23aadf0eab7f" name="6_phospho_5_dehydro_2_deoxy_D_gluconate_aldolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 4.1.2.29</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#aabd4ea8-d600-4f18-98d7-23aadf0eab7f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.29"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_6pddgluc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_msa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS181pp" metaid="_5aebb49f-ce41-48b5-abac-a2d8f4ec0c5d" name="cardiolipin_synthase__periplasmic__n_C18_1_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5aebb49f-ce41-48b5-abac-a2d8f4ec0c5d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pg181_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_clpn181_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HMBS" metaid="_464f1d0a-4d4a-4d95-95d5-4d7134b70ca8" name="hydroxymethylbilane_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018480</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.61</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_464f1d0a-4d4a-4d95-95d5-4d7134b70ca8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.61"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppbng_c" stoichiometry="4"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hmbil_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="4"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RBFSa" metaid="aefd8b19-116a-4449-8353-ad4f3ae9953a" name="riboflavin_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009780</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#aefd8b19-116a-4449-8353-ad4f3ae9953a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009780"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_db4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4r5au_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dmlz_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CU2tpp" metaid="_6e01cc85-1914-4f02-916d-8d6a5976fbb8" name="copper_transport_in_via_permease__no_H__" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6e01cc85-1914-4f02-916d-8d6a5976fbb8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cu2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cu2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LIPAabcpp" metaid="_9ca89924-0cf9-4d37-98d9-9597dc5d2f52" name="R_LIPAabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9ca89924-0cf9-4d37-98d9-9597dc5d2f52"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_kdo2lipidA_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo2lipidA_XF_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PAPSR2" metaid="_94d14f04-db64-4886-9e29-e7c1d808685f" name="R_PAPSR2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_002720 AND XFCFBP8418_012410 ) OR ( XFCFBP8418_002720 AND XFCFBP8418_013020 ) OR ( XFCFBP8418_002720 AND XFCFBP8418_021660 ) OR ( or )</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 1.8.4.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_94d14f04-db64-4886-9e29-e7c1d808685f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.4.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012410"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021660"/> + </fbc:and> + <fbc:geneProductRef fbc:geneProduct="or"/> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013020"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_paps_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pap_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_so3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HXPRT" metaid="e06109e7-8772-41b8-97c4-aad71904ef31" name="hypoxanthine_phosphoribosyltransferase__Hypoxanthine_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021340</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.4.2.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e06109e7-8772-41b8-97c4-aad71904ef31"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hxan_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MTAP" metaid="_3a4a1688-0e11-4ed9-96ac-fb9352ef8b1a" name="R_MTAP" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021330</p> + <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> + <p>EC_NUMBER: 2.4.2.28</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3a4a1688-0e11-4ed9-96ac-fb9352ef8b1a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.28"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021330"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5mta_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ade_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_5mdr1p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP161pp" metaid="ebb9f9f4-9f9d-4cbf-9dd9-d70d2bad7788" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ebb9f9f4-9f9d-4cbf-9dd9-d70d2bad7788"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp161_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg161_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OMPHHX" metaid="d1515964-e28b-41f8-9aaf-420a0992a400" name="2_octaprenyl_6_methoxyphenol_hydroxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010930</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d1515964-e28b-41f8-9aaf-420a0992a400"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2omph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="0.5"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2ombzl_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EDD" metaid="_669cb284-2f5e-4613-bf55-8d2e43585a6b" name="6_phosphogluconate_dehydratase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024710</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 4.2.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_669cb284-2f5e-4613-bf55-8d2e43585a6b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_6pgc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2ddg6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FRUptspp" metaid="_3b1cf144-0566-4f11-a09e-1c5e373c4a7a" name="D_fructose_transport_via_PEP_Pyr_PTS__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3b1cf144-0566-4f11-a09e-1c5e373c4a7a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fru_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_f1p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EDA" metaid="c0c41082-29b9-4aac-8e49-b75631a23d96" name="2_dehydro_3_deoxy_phosphogluconate_aldolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024720</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 4.1.2.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c0c41082-29b9-4aac-8e49-b75631a23d96"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024720"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2ddg6p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM4Pt2pp" metaid="cd579a5d-365c-4fdc-8ab1-8c1302bed8f1" name="GlcNAc_anhMurNAc_tetrapeptide_transport_in_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015550</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cd579a5d-365c-4fdc-8ab1-8c1302bed8f1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROT_LesA_BioS" metaid="cbdde19f-0825-4050-8f2c-5a4159aa0680" name="R_PROT_LesA_BioS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011400</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cbdde19f-0825-4050-8f2c-5a4159aa0680"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011400"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asptrna_c" stoichiometry="23"/> + <speciesReference constant="true" species="M_glutrna_c" stoichiometry="17"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1997.72"/> + <speciesReference constant="true" species="M_asntrna_c" stoichiometry="37"/> + <speciesReference constant="true" species="M_phetrna_c" stoichiometry="22"/> + <speciesReference constant="true" species="M_glytrna_c" stoichiometry="59"/> + <speciesReference constant="true" species="M_glntrna_c" stoichiometry="34"/> + <speciesReference constant="true" species="M_cystrna_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_trptrna_c" stoichiometry="11"/> + <speciesReference constant="true" species="M_protrna_c" stoichiometry="28"/> + <speciesReference constant="true" species="M_valtrna_c" stoichiometry="25"/> + <speciesReference constant="true" species="M_sertrna_c" stoichiometry="47"/> + <speciesReference constant="true" species="M_argtrna_c" stoichiometry="21"/> + <speciesReference constant="true" species="M_thrtrna_c" stoichiometry="63"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1997.72"/> + <speciesReference constant="true" species="M_alatrna_c" stoichiometry="60"/> + <speciesReference constant="true" species="M_iletrna_c" stoichiometry="29"/> + <speciesReference constant="true" species="M_lystrna_c" stoichiometry="15"/> + <speciesReference constant="true" species="M_leutrna_c" stoichiometry="58"/> + <speciesReference constant="true" species="M_mettrna_c" stoichiometry="7"/> + <speciesReference constant="true" species="M_tyrtrna_c" stoichiometry="28"/> + <speciesReference constant="true" species="M_histrna_c" stoichiometry="14"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_trnahis_c" stoichiometry="14"/> + <speciesReference constant="true" species="M_LesA_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaile_c" stoichiometry="29"/> + <speciesReference constant="true" species="M_trnaarg_c" stoichiometry="21"/> + <speciesReference constant="true" species="M_trnathr_c" stoichiometry="63"/> + <speciesReference constant="true" species="M_trnaala_c" stoichiometry="60"/> + <speciesReference constant="true" species="M_trnapro_c" stoichiometry="28"/> + <speciesReference constant="true" species="M_trnamet_c" stoichiometry="7"/> + <speciesReference constant="true" species="M_trnaser_c" stoichiometry="47"/> + <speciesReference constant="true" species="M_trnacys_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_trnaasp_c" stoichiometry="23"/> + <speciesReference constant="true" species="M_trnatrp_c" stoichiometry="11"/> + <speciesReference constant="true" species="M_trnaasn_c" stoichiometry="37"/> + <speciesReference constant="true" species="M_trnagln_c" stoichiometry="34"/> + <speciesReference constant="true" species="M_trnaphe_c" stoichiometry="22"/> + <speciesReference constant="true" species="M_trnatyr_c" stoichiometry="28"/> + <speciesReference constant="true" species="M_trnagly_c" stoichiometry="59"/> + <speciesReference constant="true" species="M_trnaval_c" stoichiometry="25"/> + <speciesReference constant="true" species="M_trnaglu_c" stoichiometry="17"/> + <speciesReference constant="true" species="M_trnaleu_c" stoichiometry="58"/> + <speciesReference constant="true" species="M_trnalys_c" stoichiometry="15"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1997.72"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1997.72"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AMPTASECG" metaid="_9c0dc877-c529-45e2-ab06-fabb4fc1ce55" name="alanyl_aminopeptidase__cys_gly_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002800</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 3.4.11.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9c0dc877-c529-45e2-ab06-fabb4fc1ce55"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.11.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cgly_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NH4tpp" metaid="f64fe1cf-9c3a-49ec-b329-1981fc7ebfe7" name="ammonia_reversible_transport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017690</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f64fe1cf-9c3a-49ec-b329-1981fc7ebfe7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017690"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nh4_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SHCHD2" metaid="_19647eb7-b93d-447a-88e3-c64aa879bebd" name="R_SHCHD2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010970</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.3.1.76</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_19647eb7-b93d-447a-88e3-c64aa879bebd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.76"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010970"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dscl_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_scl_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CU2_bd_CopA" metaid="_14797287-fd1a-4dfc-b300-9daffa59e830" name="Copper_sequestration_by_cop_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015250</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_14797287-fd1a-4dfc-b300-9daffa59e830"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cu2_p" stoichiometry="11"/> + <speciesReference constant="true" species="M_CopA_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_11cu2s_CopA_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THBPTD" metaid="_8622fea6-35d5-4e81-9aef-5a66f3939348" name="R_THBPTD" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012500</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.96</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8622fea6-35d5-4e81-9aef-5a66f3939348"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.96"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + 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rdf:about="#_7f478a86-dcba-4b43-bdfa-bf36dbd733b1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gly_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LPSabctpp" metaid="_458e980d-70fa-448b-ac26-8d00fb518e9a" name="Oantigen_core_kdo_lipidA_Ralstonia_solanacearum_specific_LPS_transport_via_ABC_system_periplasm_to_extracellular_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_458e980d-70fa-448b-ac26-8d00fb518e9a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_OLPS_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_OLPS_XF_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EDTXS1XF" metaid="cfeb2f99-37cd-4276-ac54-5a875d5bdb62" name="R_EDTXS1XF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004060 ) OR ( XFCFBP8418_015020 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.-</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cfeb2f99-37cd-4276-ac54-5a875d5bdb62"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.-"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004060"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015020"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hddecACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo2lipid4_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_kdo2lipid4HL_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SERAT" metaid="f5fb0f47-8e33-4507-9a9b-1ff077874e4e" name="serine_O_acetyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 2.3.1.30</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f5fb0f47-8e33-4507-9a9b-1ff077874e4e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.30"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acser_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPND" metaid="ac05b5bb-aec3-4b65-899f-cd0db43b95f1" name="prephenate_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021200</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 1.3.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ac05b5bb-aec3-4b65-899f-cd0db43b95f1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021200"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pphn_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_34hpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GK1" metaid="_64b44538-0b98-4e14-9b37-8a43ee722e14" name="guanylate_kinase__GMP_ATP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002650</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_64b44538-0b98-4e14-9b37-8a43ee722e14"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LEUabcpp" metaid="_2f7463c0-9137-4d02-a616-6b7f9216f12f" name="L_leucine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2f7463c0-9137-4d02-a616-6b7f9216f12f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_leu_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_leu_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR100" metaid="_7c30b382-8242-4ab9-bd3e-8a33ee49fe78" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C10_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7c30b382-8242-4ab9-bd3e-8a33ee49fe78"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3odecACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hdecACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA120" metaid="dd342e79-834f-45bb-b41c-ea27503d1749" name="Phosphatidylglycerol_synthase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dd342e79-834f-45bb-b41c-ea27503d1749"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdddecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp120_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT181" metaid="e2a02f7a-7ed8-4efb-a6f8-c77334a40727" name="R_G3PAT181" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e2a02f7a-7ed8-4efb-a6f8-c77334a40727"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_octeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_1odec11eg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDP" metaid="a30b4cb1-c39f-485d-b604-4468b4e83d36" name="thiamin_pyrophosphatase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003250</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.6.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a30b4cb1-c39f-485d-b604-4468b4e83d36"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thmpp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thmmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE2abcpp" metaid="ee7de55c-cb84-47e5-97b0-5eb5fa96d008" name="iron__II__transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009910</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ee7de55c-cb84-47e5-97b0-5eb5fa96d008"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ABUTt2pp" metaid="_0873f427-e010-46ae-a840-180cb283a6e9" name="4_aminobutyrate_transport_in_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0873f427-e010-46ae-a840-180cb283a6e9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4abut_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4abut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADCL" metaid="_421e0e7b-eb65-4739-b2eb-75149316d48e" name="R_ADCL" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014810</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.3.38</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_421e0e7b-eb65-4739-b2eb-75149316d48e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.3.38"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4adcho_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4abz_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MSO3tex" metaid="bd3c6ae0-56d8-4f23-987a-2cb585fdf959" name="methanesulfonate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007680 ) OR ( XFCFBP8418_009840 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bd3c6ae0-56d8-4f23-987a-2cb585fdf959"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009840"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mso3_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mso3_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DDGLK" metaid="_5fbef3c5-b93b-4d9c-984d-f6e1c4771e76" name="2_dehydro_3_deoxygluconokinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018640</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.45</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5fbef3c5-b93b-4d9c-984d-f6e1c4771e76"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.45"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018640"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2ddglcn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2ddg6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PStex" metaid="_05abaed6-9268-45a3-a535-ae3145a6cf90" name="glycerophosphserine_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_05abaed6-9268-45a3-a535-ae3145a6cf90"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g3ps_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3ps_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DNMPPA" metaid="d68c6357-31ae-4f64-b842-d623ff70f374" name="R_DNMPPA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d68c6357-31ae-4f64-b842-d623ff70f374"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhpmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dhnpt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OCTDPS" metaid="_7b300b6d-9a30-4887-843a-eaf6b31bb960" name="Octaprenyl_pyrophosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003680</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.90</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7b300b6d-9a30-4887-843a-eaf6b31bb960"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.90"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_frdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ipdp_c" stoichiometry="5"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_octdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="5"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT180" metaid="_38af430f-3a01-4373-8d04-5804967f5bee" name="R_G3PAT180" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_38af430f-3a01-4373-8d04-5804967f5bee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ocdcaACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_1odecg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADCS" metaid="ffa3c12c-7325-455c-98a8-f7a8129c38bf" name="4_amino_4_deoxychorismate_synthase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026740 AND XFCFBP8418_026750</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.6.1.85</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ffa3c12c-7325-455c-98a8-f7a8129c38bf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.85"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026750"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026740"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_chor_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4adcho_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CAT" metaid="fa3bfb33-f625-44fa-871f-05e8405fde85" name="catalase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020430</p> + <p>SUBSYSTEM: Superoxide_radicals_degradation</p> + <p>EC_NUMBER: 1.11.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fa3bfb33-f625-44fa-871f-05e8405fde85"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.11.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020430"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDCP1pp" metaid="_6de2d860-2eac-437b-98f7-61ce1498d5ea" name="murein_D_D_carboxypeptidase__murein5px4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_018620 ) OR ( XFCFBP8418_020420 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.16.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6de2d860-2eac-437b-98f7-61ce1498d5ea"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.16.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5px4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4px4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PIabcpp" metaid="_9b5da76b-7854-44f0-bb9b-bd39c77a57b5" name="sn_glycerol_3_phosphoethanolamine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9b5da76b-7854-44f0-bb9b-bd39c77a57b5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g3pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRA2r" metaid="_20397b20-c6a8-4d60-ab1f-8c57d84dbfd5" name="R_THRA2r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 4.1.2.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_20397b20-c6a8-4d60-ab1f-8c57d84dbfd5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_athr_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acald_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA140abcpp" metaid="_73451555-2031-45ca-8d40-f38b9705fd4c" name="phosphatidate_transport_via_ABC_system__n_C14_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_73451555-2031-45ca-8d40-f38b9705fd4c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pa140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa140_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NADPPPS" metaid="_8642b33f-f57f-4f89-bf54-a52a7bba4577" name="R_NADPPPS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8642b33f-f57f-4f89-bf54-a52a7bba4577"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GF6PTAr" metaid="_55795965-f6a5-4dfd-9b76-36e12c5fb995" name="Glutamine_fructose_6_phosphate_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015350</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.6.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_55795965-f6a5-4dfd-9b76-36e12c5fb995"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015350"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gam6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE181abcpp" metaid="d46ef64c-487c-497d-8283-03e2e7a2d0ac" name="phosphatidylethanolamine_transport_via_ABC_system__n_C18_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d46ef64c-487c-497d-8283-03e2e7a2d0ac"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe181_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GALU" metaid="_544cd7d9-e0e5-4a34-b011-adef2e62a0c5" name="UTP_glucose_1_phosphate_uridylyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004800</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_544cd7d9-e0e5-4a34-b011-adef2e62a0c5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OHPHM" metaid="_4a26de74-3974-41fa-b3f6-bcec426c17ad" name="2_octaprenyl_6_hydroxyphenol_methylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005180</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.1.1.222</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4a26de74-3974-41fa-b3f6-bcec426c17ad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.222"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2ohph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2omph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ahcys_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_orn_e" metaid="_088ee4bb-574c-4b38-a9c4-209816251311" name="R_EX_orn_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_088ee4bb-574c-4b38-a9c4-209816251311"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_orn_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GMAND" metaid="de5417ed-2086-4f4b-9e9f-6c417ab0def2" name="GDP_D_mannose_dehydratase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006460</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.47</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#de5417ed-2086-4f4b-9e9f-6c417ab0def2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.47"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006460"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gdpmann_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdpddman_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_asp_L_e" metaid="_76bf29d6-ef42-4e37-92ff-f6a1d3c6af71" name="R_EX_asp_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_76bf29d6-ef42-4e37-92ff-f6a1d3c6af71"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_asp_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PFK" metaid="_06084ea6-8cc7-45f2-a738-c1a406c8b1c5" name="phosphofructokinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026080</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 2.7.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_06084ea6-8cc7-45f2-a738-c1a406c8b1c5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RZ5PP" metaid="ee88117f-9d1b-4189-a13b-519ac6453e68" name="alpha_ribazole_5_phosphate_phosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_016540</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.1.3.73</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ee88117f-9d1b-4189-a13b-519ac6453e68"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.73"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5prdmbz_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_rdmbzi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SHKK" metaid="_2d9d7940-36f9-4f52-b34a-728428042344" name="R_SHKK" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004160</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 2.7.1.71</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2d9d7940-36f9-4f52-b34a-728428042344"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.71"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004160"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_skm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_skm5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ILETRS" metaid="_7a91f907-41a1-4510-9097-94a0db7c8bd8" name="Isoleucyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004680</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7a91f907-41a1-4510-9097-94a0db7c8bd8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnaile_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ile_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iletrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OAADC" metaid="_76151d46-e9d6-4024-8dab-ff726b55cd2d" name="oxaloacetate_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024720</p> + <p>SUBSYSTEM: Pyruvate_Metabolism</p> + <p>EC_NUMBER: 4.1.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_76151d46-e9d6-4024-8dab-ff726b55cd2d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024720"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA180" metaid="_111dd9ad-2aa2-4381-b911-a711ed7d11c7" name="Phosphatidylglycerol_synthase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_111dd9ad-2aa2-4381-b911-a711ed7d11c7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference 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xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d2e24363-f133-494a-a677-1b18d8215636"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.3.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_cpppg3_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pppg9_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SELGTHR3" metaid="_107a69f9-5d98-4b62-a714-dc37ee6216be" name="R_SELGTHR3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_107a69f9-5d98-4b62-a714-dc37ee6216be"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gslnt_c" stoichiometry="1"/> + 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</annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_D_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_alaala_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LEUTA" metaid="_05f67c70-fa33-411d-9a41-34703156a6c2" name="leucine_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014480</p> + <p>SUBSYSTEM: 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stoichiometry="1"/> + <speciesReference constant="true" species="M_dhor_S_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_orot_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DALAt2pp" metaid="_1ff9f0b8-ce7a-42a1-90f1-aeae01fbd231" name="D_alanine_transport_in_via_proton_symport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1ff9f0b8-ce7a-42a1-90f1-aeae01fbd231"> + <bqbiol:is> + <rdf:Bag> + 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<p>GENE_ASSOCIATION: XFCFBP8418_019130</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_11a1a22d-37be-440a-a711-ec0fe67162bb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdodec11eg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR80x" metaid="_72f99711-8e3b-4cc9-9323-c8aad8721e38" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C8_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_72f99711-8e3b-4cc9-9323-c8aad8721e38"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_toct2eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ocACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AHC" metaid="_0b7de0b5-f401-4d97-8a9f-8eb9522dddab" name="adenosylhomocysteinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024950</p> + <p>SUBSYSTEM: Cystein_Metabolism</p> + <p>EC_NUMBER: 3.3.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0b7de0b5-f401-4d97-8a9f-8eb9522dddab"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.3.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ahcys_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hcys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_cu2_e" metaid="b7507095-bd33-4161-93c4-eaca0ae599dd" name="R_EX_cu2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b7507095-bd33-4161-93c4-eaca0ae599dd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_cu2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA160abcpp" metaid="_9b0428b8-556c-4454-8bc3-b94c8ff0ea25" name="phosphatidate_transport_via_ABC_system__n_C16_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9b0428b8-556c-4454-8bc3-b94c8ff0ea25"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa160_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DTARTD" metaid="_0fb060a3-26e6-4409-8280-0c3cefaeaa6e" name="R_DTARTD" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_016890</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 4.2.1.81</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0fb060a3-26e6-4409-8280-0c3cefaeaa6e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.81"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tartr_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK140" metaid="cc7f6070-3430-47ce-93f0-9c6d4b2f457b" name="diacylglycerol_kinase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.1.107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cc7f6070-3430-47ce-93f0-9c6d4b2f457b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GAMptspp" metaid="e0d5d1a3-ddc8-41b4-856f-377ddf310888" name="R_GAMptspp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e0d5d1a3-ddc8-41b4-856f-377ddf310888"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gam_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gam6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_cl_e" metaid="f8f49550-bbf1-40a3-a701-6d7344888a6b" name="R_EX_cl_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f8f49550-bbf1-40a3-a701-6d7344888a6b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_cl_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ICDHyr2" metaid="f8884270-c678-4594-b521-5da61fd3b43f" name="R_ICDHyr2" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_012420 ) OR ( XFCFBP8418_013290 )</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 1.1.1.42</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f8884270-c678-4594-b521-5da61fd3b43f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.42"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013290"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012420"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_icit_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_osucc_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ICDHyr1" metaid="_3a6f37a3-e30d-4a3b-8d44-13b859c82de6" name="R_ICDHyr1" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012420 AND XFCFBP8418_013290</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 1.1.1.42</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3a6f37a3-e30d-4a3b-8d44-13b859c82de6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.42"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013290"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012420"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_osucc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SULRi" metaid="_9f7fedea-e778-446b-bc21-34963625af49" name="sulfite_reductase__NADPH2_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002700 AND XFCFBP8418_002710</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 1.8.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9f7fedea-e778-446b-bc21-34963625af49"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002710"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002700"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="5"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_so3_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_h2s_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GUAtex" metaid="d24cd184-9dfb-47d8-b10d-348f4fd24257" name="R_GUAtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d24cd184-9dfb-47d8-b10d-348f4fd24257"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gua_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gua_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AP4AHr" metaid="_8d72706a-895d-42d5-a37e-40cccdc2ab26" name="Ap4A_hydrolase__reversible" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019500</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8d72706a-895d-42d5-a37e-40cccdc2ab26"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019500"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ap4a_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TPI" metaid="_125ccb2b-525a-42f5-81b7-02d29f5fb24f" name="triose_phosphate_isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025760</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 5.3.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_125ccb2b-525a-42f5-81b7-02d29f5fb24f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025760"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_gal_e" metaid="ba58e059-2307-4b18-8399-109a35fb43ae" name="R_EX_gal_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ba58e059-2307-4b18-8399-109a35fb43ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_gal_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G1SAT" metaid="_9d7a712e-8036-4241-b97e-2a49121b73fb" name="glutamate_1_semialdehyde_aminotransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019220</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 5.4.3.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9d7a712e-8036-4241-b97e-2a49121b73fb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.3.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019220"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu1sa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5aop_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MALDt2_2pp" metaid="_9d80ccee-607d-48c9-8ca3-0257333fd2c2" name="R_MALDt2_2pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025480</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9d80ccee-607d-48c9-8ca3-0257333fd2c2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mal_D_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_mal_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSCVT" metaid="f2421df1-2a4a-40c2-91e7-b4b36d3cdb64" name="R_PSCVT" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021080</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 2.5.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f2421df1-2a4a-40c2-91e7-b4b36d3cdb64"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_skm5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3psme_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK141" metaid="_97f73aaa-f158-4c0e-aec5-f92f1805f78f" name="diacylglycerol_kinase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.1.107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_97f73aaa-f158-4c0e-aec5-f92f1805f78f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_his_L_e" metaid="_85b6e06f-04c1-444b-ad7e-ed6799502f98" name="R_EX_his_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_85b6e06f-04c1-444b-ad7e-ed6799502f98"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_his_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AIRC3" metaid="ecbfc67d-3b62-4c1b-9c28-271f7d2c6306" name="phosphoribosylaminoimidazole_carboxylase__mutase_rxn_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013040</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 5.44.99.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ecbfc67d-3b62-4c1b-9c28-271f7d2c6306"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.44.99.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013040"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5aizc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5caiz_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA160" metaid="e83a89d6-60a6-4fdf-af63-c21ef4f53c8b" name="Phosphatidylglycerol_synthase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e83a89d6-60a6-4fdf-af63-c21ef4f53c8b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdhdecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp160_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLtex" metaid="_29c0101f-cf5a-4dbb-bfd3-56c9a20ff991" name="chloride__Cl_1__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_29c0101f-cf5a-4dbb-bfd3-56c9a20ff991"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cl_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cl_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA161" metaid="af2c3417-84b9-4d18-b71e-5b21a9c40fbd" name="Phosphatidylglycerol_synthase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#af2c3417-84b9-4d18-b71e-5b21a9c40fbd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdhdec9eg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp161_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADPRDP" metaid="_3dd0ab87-7f08-4cbc-b1eb-776e8b53e3d6" name="ADPribose_diphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015820</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3dd0ab87-7f08-4cbc-b1eb-776e8b53e3d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adprib_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CITt3pp" metaid="_3b77a00f-04d5-425a-b636-33691ff010bf" name="R_CITt3pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3b77a00f-04d5-425a-b636-33691ff010bf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cit_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cit_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK160" metaid="e579cbe8-097c-441e-a6ee-baef4eade8aa" name="diacylglycerol_kinase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.1.107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e579cbe8-097c-441e-a6ee-baef4eade8aa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_12dgr160_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGM" metaid="fdb69f82-0373-429f-807b-f88bbdc5decf" name="phosphoglycerate_mutase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_016460 ) OR ( XFCFBP8418_016540 ) OR ( XFCFBP8418_027800 )</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 5.4.2.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fdb69f82-0373-429f-807b-f88bbdc5decf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016460"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027800"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016540"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2pg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3pg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK161" metaid="_57b3c827-2fa6-4e81-bdb0-6de5f1ef6e6d" name="diacylglycerol_kinase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.1.107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_57b3c827-2fa6-4e81-bdb0-6de5f1ef6e6d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa161_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGL" metaid="_812b8f84-9415-4423-bf06-846d2009b538" name="6_phosphogluconolactonase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024700</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 3.1.1.31</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_812b8f84-9415-4423-bf06-846d2009b538"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.1.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024700"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_6pgl_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_6pgc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FLDR2" metaid="_2953c195-068f-432b-93b0-4f1799543fe8" name="R_FLDR2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_016500 AND XFCFBP9418_023100 ) OR ( XFCFBP8418_027840 AND XFCFBP9418_023100 )</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2953c195-068f-432b-93b0-4f1799543fe8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP9418_023100"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027840"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP9418_023100"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_flxso_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_flxr_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGK" metaid="_949a5780-a027-4b9b-b6cc-7989c5178314" name="phosphoglycerate_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011060</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 2.7.2.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_949a5780-a027-4b9b-b6cc-7989c5178314"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.2.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011060"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3pg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_13dpg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLCt2" metaid="_1faff6b2-1f14-4c76-802e-e8c49a977d16" name="R_GLCt2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018650</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1faff6b2-1f14-4c76-802e-e8c49a977d16"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_glc_D_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glc_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGI" metaid="_26382bd4-e92e-48aa-9edc-9d7820f1cb06" name="glucose_6_phosphate_isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026530</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 5.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_26382bd4-e92e-48aa-9edc-9d7820f1cb06"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026530"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g6p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACALDtex" metaid="d2ea4b50-f902-4a7b-95c2-550da0ba9fa8" name="R_ACALDtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d2ea4b50-f902-4a7b-95c2-550da0ba9fa8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acald_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acald_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FMNAT" metaid="_2bdf44c5-2cb6-4296-9c5d-5dac7b98b1cf" name="FMN_adenylyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004690</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2bdf44c5-2cb6-4296-9c5d-5dac7b98b1cf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004690"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fmn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DDPA" metaid="a2fb8836-002f-4c28-8bc6-8cf23e5bdac7" name="3_deoxy_D_arabino_heptulosonate_7_phosphate_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014390</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 2.5.1.54</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a2fb8836-002f-4c28-8bc6-8cf23e5bdac7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.54"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_e4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2dda7p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGSL" metaid="_73e88ab8-feb4-43b9-8bbf-485162c2718d" name="argininosuccinate_lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025240</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 4.3.2.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_73e88ab8-feb4-43b9-8bbf-485162c2718d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_argsuc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PYRt2rtex" metaid="_068a01f8-c04d-4345-b5f5-d8bf4d8d4c07" name="R_PYRt2rtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_068a01f8-c04d-4345-b5f5-d8bf4d8d4c07"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pyr_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_QUINDH" metaid="aa2efde8-2998-4ec0-9559-7a9ca2a9663c" name="Quinate_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006320</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.282</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#aa2efde8-2998-4ec0-9559-7a9ca2a9663c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.282"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006320"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_quin_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_3dhq_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HSDy" metaid="db1afa15-7d63-44d6-983a-300bb048428d" name="homoserine_dehydrogenase__NADPH_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020380</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#db1afa15-7d63-44d6-983a-300bb048428d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020380"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hom_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_aspsa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGSSr" metaid="_9a2533a8-f05d-4605-871e-87af7ee80f95" name="argininosuccinate_synthase__reversible" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025280</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 6.3.4.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a2533a8-f05d-4605-871e-87af7ee80f95"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025280"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_citr_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_argsuc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDSR2" metaid="c375b01a-4888-4059-b1a1-e8c71408675b" name="R_TDSR2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_006350</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c375b01a-4888-4059-b1a1-e8c71408675b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006350"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dsbgox_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbdrd_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dsbdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbgrd_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PTRCtex" metaid="_5db91d6a-04ad-40cb-b1b5-2848ea4e3112" name="putrescine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5db91d6a-04ad-40cb-b1b5-2848ea4e3112"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ptrc_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ptrc_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_glyc_e" metaid="_303676b7-c2e0-4189-9634-db8aa9abc05b" name="R_EX_glyc_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_303676b7-c2e0-4189-9634-db8aa9abc05b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUSy" metaid="_946e491d-30ef-4d22-a21c-f94daf2b1f67" name="glutamate_synthase__NADPH_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013350 AND XFCFBP8418_013360</p> + <p>SUBSYSTEM: Glutamate_Metabolism_</p> + <p>EC_NUMBER: 1.4.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_946e491d-30ef-4d22-a21c-f94daf2b1f67"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.4.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013360"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013350"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDSR1" metaid="f7f2d2f9-df08-44da-9732-c9e15a1a2499" name="thiol_disulfide_reductase__DsbC_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003390 AND XFCFBP8418_006350</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f7f2d2f9-df08-44da-9732-c9e15a1a2499"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006350"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003390"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dsbcox_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbdrd_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dsbcrd_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbdox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYC2Ptex" metaid="_6abfaec7-5d82-4094-807e-05351db886a4" name="sn_Glycerol_2_phosphate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6abfaec7-5d82-4094-807e-05351db886a4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc2p_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc2p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METtex" metaid="e0857c6d-dcd9-4cf5-b3eb-c3ee4d21708b" name="L_methionine_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e0857c6d-dcd9-4cf5-b3eb-c3ee4d21708b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_met_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_met_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LEUTRS" metaid="_01e8e603-05fa-4f85-aace-eada9cdc28e4" name="Leucyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019710</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01e8e603-05fa-4f85-aace-eada9cdc28e4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnaleu_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_leu_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_leutrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MEOHtrpp" metaid="_9a3cb379-45c8-4d8e-bd23-8f379fc7ff68" name="Methanol_reversible_transport_via_diffusion__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a3cb379-45c8-4d8e-bd23-8f379fc7ff68"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_meoh_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_meoh_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MANtex" metaid="_96653a75-107b-4a14-bcf3-12e782efb8b2" name="R_MANtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_96653a75-107b-4a14-bcf3-12e782efb8b2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_man_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_man_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOX1abcpp" metaid="b96939fb-79ad-441c-a13b-77a4dea207dd" name="R_METSOX1abcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b96939fb-79ad-441c-a13b-77a4dea207dd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_metsox_S_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_metsox_S_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOX2tex" metaid="_5f779722-a885-4f0e-a40c-1f4eb862d134" name="R_METSOX2tex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f779722-a885-4f0e-a40c-1f4eb862d134"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_metsox_R_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_metsox_R_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PEabcpp" metaid="c63ec343-9b0f-4bd1-acdd-4cf5c0d9da79" name="sn_glycerol_3_phosphoethanolamine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c63ec343-9b0f-4bd1-acdd-4cf5c0d9da79"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3pe_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3pe_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR60x" metaid="f98904b1-2fec-4b9d-8d23-1ed5d71a8fff" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C6_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f98904b1-2fec-4b9d-8d23-1ed5d71a8fff"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thex2eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hexACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NI2t3tex" metaid="_0fcc3404-73b7-408c-9516-cf5711a5b2d8" name="R_NI2t3tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0fcc3404-73b7-408c-9516-cf5711a5b2d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ni2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ni2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOPG" metaid="_6c1b1e0c-1214-43dc-ae88-48c6e32c6574" name="R_MOPG" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6c1b1e0c-1214-43dc-ae88-48c6e32c6574"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3c4mop_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4mop_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACS" metaid="f82a531b-3cfb-4432-a2a9-fc2b1ea7a29b" name="acetyl_CoA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020630</p> + <p>SUBSYSTEM: Pyruvate_Metabolism</p> + <p>EC_NUMBER: 6.2.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f82a531b-3cfb-4432-a2a9-fc2b1ea7a29b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE60" metaid="f3b291e6-d971-4169-8526-c6cc47f9af28" name="R_FACOAE60" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f3b291e6-d971-4169-8526-c6cc47f9af28"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hxcoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hxa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TKT2" metaid="a875eaae-aebe-409c-bfb2-26d163f234fb" name="transketolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000640</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 2.2.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a875eaae-aebe-409c-bfb2-26d163f234fb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.2.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000640"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_xu5p_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_e4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHDPS" metaid="b5cb189a-d585-442f-bd55-649ff74e2a26" name="dihydrodipicolinate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009670</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 4.3.3.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b5cb189a-d585-442f-bd55-649ff74e2a26"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.3.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009670"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_aspsa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_23dhdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TKT1" metaid="e836e051-ab3f-4c80-bc79-1cc08254d046" name="transketolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000640</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 2.2.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e836e051-ab3f-4c80-bc79-1cc08254d046"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.2.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000640"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_xu5p_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_s7p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PHETA1" metaid="_87ac1595-703b-4256-851b-cbf43c1556dd" name="phenylalanine_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014480</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.58</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_87ac1595-703b-4256-851b-cbf43c1556dd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.58"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phe_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phpyr_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE100" metaid="_6b0eb87a-7795-4f00-b3ef-190b2a0ad83c" name="R_FACOAE100" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6b0eb87a-7795-4f00-b3ef-190b2a0ad83c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dcacoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dca_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_4PEPTabcpp" metaid="_3d8f4895-48d4-4116-bfd5-088e7038a524" name="tetrapeptide__LalaDgluMdapDala__transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004070 ) OR ( XFCFBP8418_004550 ) OR ( XFCFBP8418_007680 ) OR ( XFCFBP8418_010500 ) OR ( XFCFBP8418_013240 ) OR ( XFCFBP8418_019450 ) OR ( XFCFBP8418_022120 ) OR ( XFCFBP8418_024570 ) OR ( XFCFBP8418_024670 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d8f4895-48d4-4116-bfd5-088e7038a524"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019450"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024570"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013240"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdapDala_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdapDala_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HMPK1" metaid="ef3008e2-953d-4543-82a4-ec97725519db" name="hydroxymethylpyrimidine_kinase__ATP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006340</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.1.49</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ef3008e2-953d-4543-82a4-ec97725519db"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.49"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4ahmmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4ampm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DKMPPD" metaid="ccd90c3a-41ed-419a-a0bb-2b355bea1754" name="R_DKMPPD" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ccd90c3a-41ed-419a-a0bb-2b355bea1754"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dkmpp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2kmb_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PSabcpp" metaid="e0e6c33a-04e0-41d4-83a0-8545aa8b6f66" name="sn_glycerol_3_phosphoserine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e0e6c33a-04e0-41d4-83a0-8545aa8b6f66"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3ps_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3ps_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HDCAtex" metaid="_5ccf13a2-dbfe-4669-80a1-7789fd33b591" name="Hexadecanoate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ccf13a2-dbfe-4669-80a1-7789fd33b591"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hdca_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hdca_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_VALTA" metaid="ab3fe1bd-a74c-4e17-bb7d-2b5c861e2a13" name="valine_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001240</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.42</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ab3fe1bd-a74c-4e17-bb7d-2b5c861e2a13"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.42"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_val_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3mob_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPCDC" metaid="ed9df163-5291-41cb-ac95-96c5bba691c7" name="phosphopantothenoylcysteine_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015430</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.1.36</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ed9df163-5291-41cb-ac95-96c5bba691c7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.36"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015430"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4ppcys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pan4p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYCLTt4pp" metaid="c88ac52f-c624-4690-8e64-f51c7cf6aabe" name="glycolate_transport_via_sodium_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020610</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c88ac52f-c624-4690-8e64-f51c7cf6aabe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020610"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyclt_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_na1_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_na1_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyclt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NI2t3pp" metaid="_1e4068e5-51d7-4fd8-a4f4-8dd61624331a" name="nickle__Ni_2__transport_out_via_proton_antiport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010570</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1e4068e5-51d7-4fd8-a4f4-8dd61624331a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ni2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ni2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2O2tpp" metaid="_00f62093-9dbf-428f-bb5f-36cc0c95c0c9" name="hydrogen_peroxide_transport_via_diffusion__periplasm_to_cytoplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_00f62093-9dbf-428f-bb5f-36cc0c95c0c9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PDH" metaid="_89f5fa23-9fb3-4857-9262-2dff6e554c93" name="pyruvate_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005940 AND XFCFBP8418_010550 AND XFCFBP8418_010560</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_89f5fa23-9fb3-4857-9262-2dff6e554c93"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010550"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010560"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TYRTA" metaid="_1a0f1f58-e6e3-42cf-8c76-5029730e45d4" name="tyrosine_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_014480 ) OR ( XFCFBP8418_020310 )</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.57</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1a0f1f58-e6e3-42cf-8c76-5029730e45d4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.57"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020310"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014480"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tyr_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_34hpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTHP" metaid="ed1c2ad2-b573-4550-aaa1-556818013dc1" name="glutathione_peroxidase__c_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010100</p> + <p>SUBSYSTEM: Superoxide_radicals_degradation</p> + <p>EC_NUMBER: 1.11.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ed1c2ad2-b573-4550-aaa1-556818013dc1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.11.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gthox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTHS" metaid="_2f3ecbc8-470c-4eb7-9768-26bab3a42633" name="glutathione_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000840</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2f3ecbc8-470c-4eb7-9768-26bab3a42633"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glucys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR180" metaid="_68542414-bf2e-46a6-944f-0ee32746eb97" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_68542414-bf2e-46a6-944f-0ee32746eb97"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3ooctdACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hoctaACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR181" metaid="_5f0f1a76-1f64-4e0f-a45f-242afa43424e" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f0f1a76-1f64-4e0f-a45f-242afa43424e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ocvac11eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hcvac11eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_E4PD" metaid="_89a7a200-7abe-4471-bcd7-a5c482b3e7d8" name="Erythrose_4_phosphate_dehydrogenase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007260</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.2.1.72</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_89a7a200-7abe-4471-bcd7-a5c482b3e7d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.72"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007260"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_e4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_4per_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALKP" metaid="_50f0e00d-d655-43c6-82c6-dcd4a2ea5411" name="R_ALKP" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006010</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.1.3.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_50f0e00d-d655-43c6-82c6-dcd4a2ea5411"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006010"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dha_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UM4PCP" metaid="_82ef8cdc-f8b5-4c23-b88d-60c94ea708d2" name="UDP_N_acetylmuramoyl_L_alanyl_D_gamma_glutamyl_meso_2_6_diaminopimelate_D_alanine_L_D_carboxypeptidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.17.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_82ef8cdc-f8b5-4c23-b88d-60c94ea708d2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_um4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ugmd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AKGDH" metaid="_7c11985a-84f0-4221-bf6f-e2d48fdb05e1" name="2_Oxoglutarate_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002140 AND XFCFBP8418_002150 AND XFCFBP8418_010560</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7c11985a-84f0-4221-bf6f-e2d48fdb05e1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002150"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002140"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010560"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Htex" metaid="_87f9ed1c-6979-4b1d-b0f5-ba4aa7d809be" name="proton_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_87f9ed1c-6979-4b1d-b0f5-ba4aa7d809be"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE80" metaid="a6fe5fae-c98c-4143-83a3-fa6cc92188e8" name="R_FACOAE80" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a6fe5fae-c98c-4143-83a3-fa6cc92188e8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_occoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_octa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RIBabcpp" metaid="b282077a-1401-46fa-b1d7-a9dd3b808eaa" name="R_RIBabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b282077a-1401-46fa-b1d7-a9dd3b808eaa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_rib_D_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_rib_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HISabcpp" metaid="ba31d6cb-e824-4706-9e51-539ef32f482a" name="L_histidine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004750 ) OR ( XFCFBP8418_022890 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.21</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ba31d6cb-e824-4706-9e51-539ef32f482a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.21"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_his_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_his_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPt2_2tex" metaid="d7e34678-04d4-4e7a-8de6-cc6b0eb0f51e" name="R_ASPt2_2tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d7e34678-04d4-4e7a-8de6-cc6b0eb0f51e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_asp_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IZPN" metaid="_5f616904-a689-4932-ac44-22ad74389bd9" name="imidazolonepropionase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 3.5.2.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f616904-a689-4932-ac44-22ad74389bd9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.2.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4izp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_forglu_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ENO" metaid="_179a44bc-7464-4c08-a043-29d4c2ba14ef" name="enolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022220</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 4.2.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_179a44bc-7464-4c08-a043-29d4c2ba14ef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022220"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2pg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CO2tex" metaid="_809d6c35-a3db-4775-a2fd-48eafb45eb30" name="CO2_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_809d6c35-a3db-4775-a2fd-48eafb45eb30"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_co2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PERD" metaid="_76242408-fe56-48c6-ba35-5e36fd9d74d9" name="Erythronate_4_phosphate__4per__dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.290</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_76242408-fe56-48c6-ba35-5e36fd9d74d9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.290"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4per_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ohpb_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDPXYLS" metaid="_9b1ab803-476c-47f6-b5d0-6bab0d1c3d9d" name="UDP_xylose_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020820</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.1.1.35</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9b1ab803-476c-47f6-b5d0-6bab0d1c3d9d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.35"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp4kp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpxyl_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSTGL" metaid="c92731bb-f621-47fa-b53b-f050ea82b7b7" name="R_CYSTGL" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010590</p> + <p>SUBSYSTEM: Cystein_Metabolism</p> + <p>EC_NUMBER: 4.4.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c92731bb-f621-47fa-b53b-f050ea82b7b7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.4.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cyst_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2obut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUCtpp" metaid="_34363cfc-fa7f-4df4-a073-49f5befcdf50" name="R_FUCtpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018650</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_34363cfc-fa7f-4df4-a073-49f5befcdf50"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_fuc_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fuc_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE120" metaid="_2691931b-9cfe-40d9-95d9-13e4ed057413" name="R_FACOAE120" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2691931b-9cfe-40d9-95d9-13e4ed057413"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ddcacoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ddca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + </listOfReactions> + </model> +</sbml>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/attributes/GetReactantsFromReactions/test-data/XF_network_R_Seed.tab Fri Jul 29 13:23:40 2022 +0000 @@ -0,0 +1,2 @@ +R_ACGS +R_GLUN
--- a/tools/attributes/SbmlSetChargesFromFile/SbmlSetChargesFromFile.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/attributes/SbmlSetChargesFromFile/SbmlSetChargesFromFile.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_SbmlSetChargesFromFile" name="SbmlSetChargesFromFile" version="1.0.1"> +<tool id="met4j_SbmlSetChargesFromFile" name="SbmlSetChargesFromFile" version="1.1.0"> <description>Set charge to network metabolites from a tabulated file containing the metabolite ids and the formulas</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.SbmlSetChargesFromFile#if str($colcharge) != 'nan': -cc "$colcharge"
--- a/tools/attributes/SbmlSetEcsFromFile/SbmlSetEcsFromFile.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/attributes/SbmlSetEcsFromFile/SbmlSetEcsFromFile.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_SbmlSetEcsFromFile" name="SbmlSetEcsFromFile" version="1.0.1"> +<tool id="met4j_SbmlSetEcsFromFile" name="SbmlSetEcsFromFile" version="1.1.0"> <description>Set EC numbers to reactions from a tabulated file containing the reaction ids and the EC</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.SbmlSetEcsFromFile#if str($colec) != 'nan': -cec "$colec"
--- a/tools/attributes/SbmlSetFormulasFromFile/SbmlSetFormulasFromFile.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/attributes/SbmlSetFormulasFromFile/SbmlSetFormulasFromFile.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_SbmlSetFormulasFromFile" name="SbmlSetFormulasFromFile" version="1.0.1"> +<tool id="met4j_SbmlSetFormulasFromFile" name="SbmlSetFormulasFromFile" version="1.1.0"> <description>Set Formula to network metabolites from a tabulated file containing the metabolite ids and the formulas</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.SbmlSetFormulasFromFile#if str($colformula) != 'nan': -cf "$colformula"
--- a/tools/attributes/SbmlSetGprsFromFile/SbmlSetGprsFromFile.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/attributes/SbmlSetGprsFromFile/SbmlSetGprsFromFile.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_SbmlSetGprsFromFile" name="SbmlSetGprsFromFile" version="1.0.1"> +<tool id="met4j_SbmlSetGprsFromFile" name="SbmlSetGprsFromFile" version="1.1.0"> <description>Create a new SBML file from an original sbml file and a tabulated file containing reaction ids and Gene association written in a cobra way</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.SbmlSetGprsFromFile#if str($colgpr) != 'nan': -cgpr "$colgpr"
--- a/tools/attributes/SbmlSetNamesFromFile/SbmlSetNamesFromFile.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/attributes/SbmlSetNamesFromFile/SbmlSetNamesFromFile.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_SbmlSetNamesFromFile" name="SbmlSetNamesFromFile" version="1.0.1"> +<tool id="met4j_SbmlSetNamesFromFile" name="SbmlSetNamesFromFile" version="1.1.0"> <description>Set names to network objects from a tabulated file containing the object ids and the names</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.SbmlSetNamesFromFile#if str($colname) != 'nan': -cname "$colname"
--- a/tools/attributes/SbmlSetPathwaysFromFile/SbmlSetPathwaysFromFile.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/attributes/SbmlSetPathwaysFromFile/SbmlSetPathwaysFromFile.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_SbmlSetPathwaysFromFile" name="SbmlSetPathwaysFromFile" version="1.0.1"> +<tool id="met4j_SbmlSetPathwaysFromFile" name="SbmlSetPathwaysFromFile" version="1.1.0"> <description>Set pathway to reactions in a network from a tabulated file containing the reaction ids and the pathways</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.SbmlSetPathwaysFromFile#if str($colp) != 'nan': -cp "$colp"
--- a/tools/attributes/SbmlSetRefsFromFile/SbmlSetRefsFromFile.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/attributes/SbmlSetRefsFromFile/SbmlSetRefsFromFile.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_SbmlSetRefsFromFile" name="SbmlSetRefsFromFile" version="1.0.1"> +<tool id="met4j_SbmlSetRefsFromFile" name="SbmlSetRefsFromFile" version="1.1.0"> <description>Add refs to network objects from a tabulated file containing the metabolite ids and the formulas</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.SbmlSetRefsFromFile#if str($colRef) != 'nan': -cr "$colRef"
--- a/tools/attributes/SbmlToMetaboliteTable/SbmlToMetaboliteTable.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/attributes/SbmlToMetaboliteTable/SbmlToMetaboliteTable.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_SbmlToMetaboliteTable" name="SbmlToMetaboliteTable" version="1.0.1"> +<tool id="met4j_SbmlToMetaboliteTable" name="SbmlToMetaboliteTable" version="1.1.0"> <description>Create a tabulated file with metabolite attributes from a SBML file</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.SbmlToMetaboliteTable -s "$sbml" -o "$outputFile"
--- a/tools/bigg/GetModelProteome/GetModelProteome.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/bigg/GetModelProteome/GetModelProteome.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_GetModelProteome" name="GetModelProteome" version="1.0.1"> +<tool id="met4j_GetModelProteome" name="GetModelProteome" version="1.1.0"> <description>Get proteome in fasta format of a model present in BIGG</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh bigg.GetModelProteome -m "$modelId" -o "$outputFile"
--- a/tools/convert/FbcToNotes/FbcToNotes.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/convert/FbcToNotes/FbcToNotes.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_FbcToNotes" name="FbcToNotes" version="1.0.1"> +<tool id="met4j_FbcToNotes" name="FbcToNotes" version="1.1.0"> <description>Convert FBC package annotations to sbml notes</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.FbcToNotes -i "$inputPath" -o "$outputPath"
--- a/tools/convert/Kegg2Sbml/Kegg2Sbml.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/convert/Kegg2Sbml/Kegg2Sbml.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_Kegg2Sbml" name="Kegg2Sbml" version="1.0.1"> +<tool id="met4j_Kegg2Sbml" name="Kegg2Sbml" version="1.1.0"> <description>Build a SBML file from KEGG organism-specific pathways. Uses Kegg API.</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.Kegg2Sbml#if str($org): -org "$org"
--- a/tools/convert/Sbml2Graph/Sbml2Graph.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/convert/Sbml2Graph/Sbml2Graph.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_Sbml2Graph" name="Sbml2Graph" version="1.0.1"> +<tool id="met4j_Sbml2Graph" name="Sbml2Graph" version="1.1.0"> <description>Create a graph representation of a SBML file content, and export it in graph file format.</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.Sbml2Graph -i "$inputPath" $bipartite
--- a/tools/convert/Sbml2Tab/Sbml2Tab.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/convert/Sbml2Tab/Sbml2Tab.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_Sbml2Tab" name="Sbml2Tab" version="1.0.1"> +<tool id="met4j_Sbml2Tab" name="Sbml2Tab" version="1.1.0"> <description>Create a tabulated file from a SBML file</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.Sbml2Tab#if str($i): -i "$i"
--- a/tools/convert/Tab2Sbml/Tab2Sbml.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/convert/Tab2Sbml/Tab2Sbml.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_Tab2Sbml" name="Tab2Sbml" version="1.0.1"> +<tool id="met4j_Tab2Sbml" name="Tab2Sbml" version="1.1.0"> <description>Create a Sbml File from a tabulated file that contains the reaction ids and the formulas</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.Tab2Sbml#if str($colid) != 'nan': -ci "$colid"
--- a/tools/met4j.yml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/met4j.yml Fri Jul 29 13:23:40 2022 +0000 @@ -3,12 +3,21 @@ install_resolver_dependencies: true install_tool_dependencies: false tools: + - name: DecomposeSBML + owner: metexplore + tool_panel_section_id: met4j_attributes - name: ExtractPathways owner: metexplore tool_panel_section_id: met4j_attributes - name: ExtractSbmlAnnot owner: metexplore tool_panel_section_id: met4j_attributes + - name: GetGenesFromReactions + owner: metexplore + tool_panel_section_id: met4j_attributes + - name: GetReactantsFromReactions + owner: metexplore + tool_panel_section_id: met4j_attributes - name: SbmlSetChargesFromFile owner: metexplore tool_panel_section_id: met4j_attributes
--- a/tools/networkAnalysis/CarbonSkeletonNet/CarbonSkeletonNet.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/networkAnalysis/CarbonSkeletonNet/CarbonSkeletonNet.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_CarbonSkeletonNet" name="CarbonSkeletonNet" version="1.0.1"> +<tool id="met4j_CarbonSkeletonNet" name="CarbonSkeletonNet" version="1.1.0"> <description>Create a carbon skeleton graph representation of a SBML file content, using GSAM atom-mapping file (see https://forgemia.inra.fr/metexplore/gsam)</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.CarbonSkeletonNet -s "$inputPath" -g "$inputAAM"
--- a/tools/networkAnalysis/ChokePoint/ChokePoint.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/networkAnalysis/ChokePoint/ChokePoint.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_ChokePoint" name="ChokePoint" version="1.0.1"> +<tool id="met4j_ChokePoint" name="ChokePoint" version="1.1.0"> <description>Compute the Choke points of a metabolic network.</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.ChokePoint -i "$inputPath" #if str($sideCompoundFile) != 'None':
--- a/tools/networkAnalysis/CompoundNet/CompoundNet.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/networkAnalysis/CompoundNet/CompoundNet.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_CompoundNet" name="CompoundNet" version="1.0.1"> +<tool id="met4j_CompoundNet" name="CompoundNet" version="1.1.0"> <description>Advanced creation of a compound graph representation of a SBML file content</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.CompoundNet -s "$inputPath" #if str($inputSide) != 'None':
--- a/tools/networkAnalysis/DistanceMatrix/DistanceMatrix.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/networkAnalysis/DistanceMatrix/DistanceMatrix.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_DistanceMatrix" name="DistanceMatrix" version="1.0.1"> +<tool id="met4j_DistanceMatrix" name="DistanceMatrix" version="1.1.0"> <description>Create a compound to compound distance matrix.</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.DistanceMatrix -i "$inputPath" #if str($sideCompoundFile) != 'None':
--- a/tools/networkAnalysis/ExtractSubBipNetwork/ExtractSubBipNetwork.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/networkAnalysis/ExtractSubBipNetwork/ExtractSubBipNetwork.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_ExtractSubBipNetwork" name="ExtractSubBipNetwork" version="1.0.1"> +<tool id="met4j_ExtractSubBipNetwork" name="ExtractSubBipNetwork" version="1.1.0"> <description>Create a subnetwork from a GSMN in SBML format, and two files containing lists of compounds and/or reactions of interests ids, one per row, plus one file of the same format containing side compounds ids.</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.ExtractSubBipNetwork -i "$inputPath" -s "$sourcePath"
--- a/tools/networkAnalysis/ExtractSubNetwork/ExtractSubNetwork.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/networkAnalysis/ExtractSubNetwork/ExtractSubNetwork.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_ExtractSubNetwork" name="ExtractSubNetwork" version="1.0.1"> +<tool id="met4j_ExtractSubNetwork" name="ExtractSubNetwork" version="1.1.0"> <description>Create a subnetwork from a GSMN in SBML format, and two files containing lists of compounds of interests ids, one per row.</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.ExtractSubNetwork -i "$inputPath" -s "$sourcePath"
--- a/tools/networkAnalysis/ExtractSubReactionNetwork/ExtractSubReactionNetwork.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/networkAnalysis/ExtractSubReactionNetwork/ExtractSubReactionNetwork.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_ExtractSubReactionNetwork" name="ExtractSubReactionNetwork" version="1.0.1"> +<tool id="met4j_ExtractSubReactionNetwork" name="ExtractSubReactionNetwork" version="1.1.0"> <description>Create a subnetwork from a GSMN in SBML format, and two files containing lists of reactions of interests ids, one per row, plus one file of the same format containing side compounds ids.</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.ExtractSubReactionNetwork -i "$inputPath" -s "$sourcePath"
--- a/tools/networkAnalysis/LoadPoint/LoadPoint.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/networkAnalysis/LoadPoint/LoadPoint.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_LoadPoint" name="LoadPoint" version="1.0.1"> +<tool id="met4j_LoadPoint" name="LoadPoint" version="1.1.0"> <description>Compute the Load points of a metabolic network. Load points constitute an indicator of lethality and can help identifying drug target.</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.LoadPoint -i "$inputPath" #if str($sideCompoundFile) != 'None':
--- a/tools/networkAnalysis/MetaboRank/MetaboRank.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/networkAnalysis/MetaboRank/MetaboRank.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_MetaboRank" name="MetaboRank" version="1.0.1"> +<tool id="met4j_MetaboRank" name="MetaboRank" version="1.1.0"> <description>Compute the MetaboRank, a custom personalized PageRank for metabolic network.</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.MetaboRank -i "$sbmlFilePath" -s "$seedsFilePath"
--- a/tools/networkAnalysis/NetworkSummary/NetworkSummary.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/networkAnalysis/NetworkSummary/NetworkSummary.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_NetworkSummary" name="NetworkSummary" version="1.0.1"> +<tool id="met4j_NetworkSummary" name="NetworkSummary" version="1.1.0"> <description>Create a report summarizing several graph measures characterising the structure of the network.</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.NetworkSummary -i "$inputPath" #if str($sideCompoundFile) != 'None':
--- a/tools/networkAnalysis/PrecursorNetwork/PrecursorNetwork.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/networkAnalysis/PrecursorNetwork/PrecursorNetwork.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_PrecursorNetwork" name="PrecursorNetwork" version="1.0.1"> +<tool id="met4j_PrecursorNetwork" name="PrecursorNetwork" version="1.1.0"> <description>Perform a network expansion from a set of compound targets to create a precursor network.</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.PrecursorNetwork -i "$sbmlFilePath" -t "$targetsFilePath"
--- a/tools/networkAnalysis/ScopeNetwork/ScopeNetwork.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/networkAnalysis/ScopeNetwork/ScopeNetwork.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_ScopeNetwork" name="ScopeNetwork" version="1.0.1"> +<tool id="met4j_ScopeNetwork" name="ScopeNetwork" version="1.1.0"> <description>Perform a network expansion from a set of compound seeds to create a scope network</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.ScopeNetwork -i "$sbmlFilePath" -s "$seedsFilePath"
--- a/tools/networkAnalysis/SideCompoundsScan/SideCompoundsScan.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/networkAnalysis/SideCompoundsScan/SideCompoundsScan.xml Fri Jul 29 13:23:40 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_SideCompoundsScan" name="SideCompoundsScan" version="1.0.1"> +<tool id="met4j_SideCompoundsScan" name="SideCompoundsScan" version="1.1.0"> <description>Scan a network to identify side-compounds.</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.SideCompoundsScan -i "$inputPath" $sideOnly
--- a/tools/tool_conf.xml Tue Jul 19 14:20:07 2022 +0000 +++ b/tools/tool_conf.xml Fri Jul 29 13:23:40 2022 +0000 @@ -2,8 +2,11 @@ <toolbox monitor="true"> <label id="met4j" text="MET4J"/> <section id="met4j_attributes" name="Met4J - attributes"/> + <tool file="met4j/attributes/DecomposeSBML/DecomposeSBML.xml"/> <tool file="met4j/attributes/ExtractPathways/ExtractPathways.xml"/> <tool file="met4j/attributes/ExtractSbmlAnnot/ExtractSbmlAnnot.xml"/> + <tool file="met4j/attributes/GetGenesFromReactions/GetGenesFromReactions.xml"/> + <tool file="met4j/attributes/GetReactantsFromReactions/GetReactantsFromReactions.xml"/> <tool file="met4j/attributes/SbmlSetChargesFromFile/SbmlSetChargesFromFile.xml"/> <tool file="met4j/attributes/SbmlSetEcsFromFile/SbmlSetEcsFromFile.xml"/> <tool file="met4j/attributes/SbmlSetFormulasFromFile/SbmlSetFormulasFromFile.xml"/>