Mercurial > repos > metexplore > met4j

comparison tools/convert/Kegg2Sbml/Kegg2Sbml.xml @ 1:9b162ee6ff8e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
author metexplore
date Mon, 27 Jun 2022 13:41:08 +0000
parents dcd16521b969
children e69a78624877
comparison
equal deleted inserted replaced
0:dcd16521b969 1:9b162ee6ff8e
1 <?xml version="1.0" encoding="UTF-8"?> 1 <?xml version="1.0" encoding="UTF-8"?>
2 <tool id="met4j_Kegg2Sbml" name="Kegg2Sbml" version="0.11.0"> 2 <tool id="met4j_Kegg2Sbml" name="Kegg2Sbml" version="0.12.0">
3 <description>Build a SBML file from KEGG organism-specific pathways. Uses Kegg API.</description> 3 <description>Build a SBML file from KEGG organism-specific pathways. Uses Kegg API.</description>
4 <xrefs> 4 <xrefs>
5 <xref type="bio.tools">met4j</xref> 5 <xref type="bio.tools">met4j</xref>
6 </xrefs> 6 </xrefs>
7 <requirements> 7 <requirements>
8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.11.0</container> 8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.12.0</container>
9 </requirements> 9 </requirements>
10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.Kegg2Sbml#if str($org): 10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.Kegg2Sbml#if str($org):
11 -org "$org" 11 -org "$org"
12 #end if 12 #end if
13 -sbml "$sbml" 13 -sbml "$sbml"
20 </param> 20 </param>
21 </inputs> 21 </inputs>
22 <outputs> 22 <outputs>
23 <data format="sbml" name="sbml"/> 23 <data format="sbml" name="sbml"/>
24 </outputs> 24 </outputs>
25 <tests> 25 <tests/>
26 <!-- <test maxseconds="600">
27 <param name="org" value="buc"/>
28 <output ftype="sbml" name="sbml">
29 <assert_contents>
30 <is_valid_xml/>
31
32 </assert_contents>
33 </output>
34 </test> -->
35 </tests>
36 <help><![CDATA[Build a SBML file from KEGG organism-specific pathways. Uses Kegg API. 26 <help><![CDATA[Build a SBML file from KEGG organism-specific pathways. Uses Kegg API.
37 Errors returned by this program could be due to Kegg API dysfunctions or limitations. Try later if this problem occurs.]]></help> 27 Errors returned by this program could be due to Kegg API dysfunctions or limitations. Try later if this problem occurs.]]></help>
28 <citations/>
38 </tool> 29 </tool>