Mercurial > repos > metexplore > met4j
diff tools/convert/Kegg2Sbml/Kegg2Sbml.xml @ 1:9b162ee6ff8e draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
author | metexplore |
---|---|
date | Mon, 27 Jun 2022 13:41:08 +0000 |
parents | dcd16521b969 |
children | e69a78624877 |
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--- a/tools/convert/Kegg2Sbml/Kegg2Sbml.xml Fri Jun 10 10:31:34 2022 +0000 +++ b/tools/convert/Kegg2Sbml/Kegg2Sbml.xml Mon Jun 27 13:41:08 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_Kegg2Sbml" name="Kegg2Sbml" version="0.11.0"> +<tool id="met4j_Kegg2Sbml" name="Kegg2Sbml" version="0.12.0"> <description>Build a SBML file from KEGG organism-specific pathways. Uses Kegg API.</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.11.0</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.12.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.Kegg2Sbml#if str($org): -org "$org" @@ -22,17 +22,8 @@ <outputs> <data format="sbml" name="sbml"/> </outputs> - <tests> - <!-- <test maxseconds="600"> - <param name="org" value="buc"/> - <output ftype="sbml" name="sbml"> - <assert_contents> - <is_valid_xml/> - - </assert_contents> - </output> - </test> --> - </tests> + <tests/> <help><![CDATA[Build a SBML file from KEGG organism-specific pathways. Uses Kegg API. Errors returned by this program could be due to Kegg API dysfunctions or limitations. Try later if this problem occurs.]]></help> + <citations/> </tool>