Mercurial > repos > metexplore > met4j

diff tools/tool_conf.xml @ 0:dcd16521b969 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 5dab0a2d83a1fdd7a1878a50ba0f24e752505393
author metexplore
date Fri, 10 Jun 2022 10:31:34 +0000
parents
children 9b162ee6ff8e
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/tool_conf.xml	Fri Jun 10 10:31:34 2022 +0000
@@ -0,0 +1,37 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<toolbox monitor="true">
+  <section id="met4j" name="met4j apps">
+    <label id="attributes" text="met4j attributes" version=""/>
+    <tool file="met4j/attributes/ExtractPathways/ExtractPathways.xml"/>
+    <tool file="met4j/attributes/ExtractSbmlAnnot/ExtractSbmlAnnot.xml"/>
+    <tool file="met4j/attributes/SbmlSetChargesFromFile/SbmlSetChargesFromFile.xml"/>
+    <tool file="met4j/attributes/SbmlSetEcsFromFile/SbmlSetEcsFromFile.xml"/>
+    <tool file="met4j/attributes/SbmlSetFormulasFromFile/SbmlSetFormulasFromFile.xml"/>
+    <tool file="met4j/attributes/SbmlSetGprsFromFile/SbmlSetGprsFromFile.xml"/>
+    <tool file="met4j/attributes/SbmlSetNamesFromFile/SbmlSetNamesFromFile.xml"/>
+    <tool file="met4j/attributes/SbmlSetPathwaysFromFile/SbmlSetPathwaysFromFile.xml"/>
+    <tool file="met4j/attributes/SbmlSetRefsFromFile/SbmlSetRefsFromFile.xml"/>
+    <tool file="met4j/attributes/SbmlToMetaboliteTable/SbmlToMetaboliteTable.xml"/>
+    <label id="bigg" text="met4j bigg" version=""/>
+    <tool file="met4j/bigg/GetModelProteome/GetModelProteome.xml"/>
+    <label id="convert" text="met4j convert" version=""/>
+    <tool file="met4j/convert/FbcToNotes/FbcToNotes.xml"/>
+    <tool file="met4j/convert/Kegg2Sbml/Kegg2Sbml.xml"/>
+    <tool file="met4j/convert/Sbml2Graph/Sbml2Graph.xml"/>
+    <tool file="met4j/convert/Sbml2Tab/Sbml2Tab.xml"/>
+    <tool file="met4j/convert/Tab2Sbml/Tab2Sbml.xml"/>
+    <label id="networkAnalysis" text="met4j networkAnalysis" version=""/>
+    <tool file="met4j/networkAnalysis/CarbonSkeletonNet/CarbonSkeletonNet.xml"/>
+    <tool file="met4j/networkAnalysis/ChokePoint/ChokePoint.xml"/>
+    <tool file="met4j/networkAnalysis/CompoundNet/CompoundNet.xml"/>
+    <tool file="met4j/networkAnalysis/DistanceMatrix/DistanceMatrix.xml"/>
+    <tool file="met4j/networkAnalysis/ExtractSubNetwork/ExtractSubNetwork.xml"/>
+    <tool file="met4j/networkAnalysis/ExtractSubReactionNetwork/ExtractSubReactionNetwork.xml"/>
+    <tool file="met4j/networkAnalysis/LoadPoint/LoadPoint.xml"/>
+    <tool file="met4j/networkAnalysis/MetaboRank/MetaboRank.xml"/>
+    <tool file="met4j/networkAnalysis/NetworkSummary/NetworkSummary.xml"/>
+    <tool file="met4j/networkAnalysis/PrecursorNetwork/PrecursorNetwork.xml"/>
+    <tool file="met4j/networkAnalysis/ScopeNetwork/ScopeNetwork.xml"/>
+    <tool file="met4j/networkAnalysis/SideCompoundsScan/SideCompoundsScan.xml"/>
+  </section>
+</toolbox>