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view tools/tool_conf.xml @ 8:1274e2a62479 draft default tip

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planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit e34acf0f51cafcf6ae7c97b4feb3188a39f17c32
author metexplore
date Wed, 26 Jul 2023 15:33:45 +0000
parents 1436e9cde9c9
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<?xml version="1.0" encoding="UTF-8"?>
<toolbox monitor="true">
  <label id="met4j" text="MET4J"/>
  <section id="met4j_attributes" name="Met4J - attributes"/>
  <tool file="met4j/attributes/DecomposeSBML/DecomposeSBML.xml"/>
  <tool file="met4j/attributes/ExtractPathways/ExtractPathways.xml"/>
  <tool file="met4j/attributes/ExtractSbmlAnnot/ExtractSbmlAnnot.xml"/>
  <tool file="met4j/attributes/GetGenesFromReactions/GetGenesFromReactions.xml"/>
  <tool file="met4j/attributes/GetReactantsFromReactions/GetReactantsFromReactions.xml"/>
  <tool file="met4j/attributes/SbmlSetChargesFromFile/SbmlSetChargesFromFile.xml"/>
  <tool file="met4j/attributes/SbmlSetEcsFromFile/SbmlSetEcsFromFile.xml"/>
  <tool file="met4j/attributes/SbmlSetFormulasFromFile/SbmlSetFormulasFromFile.xml"/>
  <tool file="met4j/attributes/SbmlSetGprsFromFile/SbmlSetGprsFromFile.xml"/>
  <tool file="met4j/attributes/SbmlSetIdsFromFile/SbmlSetIdsFromFile.xml"/>
  <tool file="met4j/attributes/SbmlSetNamesFromFile/SbmlSetNamesFromFile.xml"/>
  <tool file="met4j/attributes/SbmlSetPathwaysFromFile/SbmlSetPathwaysFromFile.xml"/>
  <tool file="met4j/attributes/SbmlSetRefsFromFile/SbmlSetRefsFromFile.xml"/>
  <tool file="met4j/attributes/SbmlToMetaboliteTable/SbmlToMetaboliteTable.xml"/>
  <section id="met4j_bigg" name="Met4J - bigg"/>
  <tool file="met4j/bigg/GetModelProteome/GetModelProteome.xml"/>
  <section id="met4j_convert" name="Met4J - convert"/>
  <tool file="met4j/convert/FbcToNotes/FbcToNotes.xml"/>
  <tool file="met4j/convert/Kegg2Sbml/Kegg2Sbml.xml"/>
  <tool file="met4j/convert/SBMLwizard/SBMLwizard.xml"/>
  <tool file="met4j/convert/Sbml2Graph/Sbml2Graph.xml"/>
  <tool file="met4j/convert/Sbml2Tab/Sbml2Tab.xml"/>
  <tool file="met4j/convert/Tab2Sbml/Tab2Sbml.xml"/>
  <section id="met4j_mapping" name="Met4J - mapping"/>
  <tool file="met4j/mapping/NameMatcher/NameMatcher.xml"/>
  <tool file="met4j/mapping/ORApathwayEnrichment/ORApathwayEnrichment.xml"/>
  <section id="met4j_networkanalysis" name="Met4J - networkAnalysis"/>
  <tool file="met4j/networkAnalysis/BipartiteDistanceMatrix/BipartiteDistanceMatrix.xml"/>
  <tool file="met4j/networkAnalysis/CarbonSkeletonNet/CarbonSkeletonNet.xml"/>
  <tool file="met4j/networkAnalysis/ChemSimilarityWeighting/ChemSimilarityWeighting.xml"/>
  <tool file="met4j/networkAnalysis/ChokePoint/ChokePoint.xml"/>
  <tool file="met4j/networkAnalysis/CompoundNet/CompoundNet.xml"/>
  <tool file="met4j/networkAnalysis/DegreeWeighting/DegreeWeighting.xml"/>
  <tool file="met4j/networkAnalysis/DistanceMatrix/DistanceMatrix.xml"/>
  <tool file="met4j/networkAnalysis/ExtractSubBipNetwork/ExtractSubBipNetwork.xml"/>
  <tool file="met4j/networkAnalysis/ExtractSubNetwork/ExtractSubNetwork.xml"/>
  <tool file="met4j/networkAnalysis/ExtractSubReactionNetwork/ExtractSubReactionNetwork.xml"/>
  <tool file="met4j/networkAnalysis/LoadPoint/LoadPoint.xml"/>
  <tool file="met4j/networkAnalysis/MetaboRank/MetaboRank.xml"/>
  <tool file="met4j/networkAnalysis/NetworkSummary/NetworkSummary.xml"/>
  <tool file="met4j/networkAnalysis/PathwayNet/PathwayNet.xml"/>
  <tool file="met4j/networkAnalysis/PrecursorNetwork/PrecursorNetwork.xml"/>
  <tool file="met4j/networkAnalysis/ReactionDistanceMatrix/ReactionDistanceMatrix.xml"/>
  <tool file="met4j/networkAnalysis/ScopeNetwork/ScopeNetwork.xml"/>
  <tool file="met4j/networkAnalysis/SeedsAndTargets/SeedsAndTargets.xml"/>
  <tool file="met4j/networkAnalysis/SideCompoundsScan/SideCompoundsScan.xml"/>
  <tool file="met4j/networkAnalysis/TopologicalPathwayAnalysis/TopologicalPathwayAnalysis.xml"/>
  <section id="met4j_reconstruction" name="Met4J - reconstruction"/>
  <tool file="met4j/reconstruction/SbmlCheckBalance/SbmlCheckBalance.xml"/>
</toolbox>