Mercurial > repos > mheinzl > fsd
annotate test-data/fsd_output1.tab @ 43:f72593bcc8ee draft
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit 033dd7b750f68e8aa68f327d7d72bd311ddbee4e-dirty
author | mheinzl |
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date | Wed, 14 Aug 2019 12:38:15 -0400 |
parents | c825a29a7d9f |
children | 6651e76baca1 |
rev | line source |
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18
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
17
diff
changeset
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1 Values from family size distribution with all datasets (tags) |
17
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
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2 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
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3 Family size fsd_data1.tab fsd_data2.tab fsd_data3.tab fsd_data4.tab |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
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4 FS=1 63 63 63 63 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
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5 FS=2 5 5 5 5 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
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6 FS=3 8 8 8 8 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
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7 FS=4 9 9 9 9 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
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8 FS=5 3 3 3 3 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
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9 FS=6 5 5 5 5 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
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10 FS=7 3 3 3 3 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
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11 FS=8 3 3 3 3 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
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12 FS=9 2 2 2 2 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
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13 FS=10 3 3 3 3 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
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changeset
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14 FS=11 1 1 1 1 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
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15 FS=12 3 3 3 3 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
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16 FS=13 3 3 3 3 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
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17 FS=14 0 0 0 0 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
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18 FS=15 0 0 0 0 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
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19 FS=16 0 0 0 0 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
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20 FS=17 0 0 0 0 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
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21 FS=18 0 0 0 0 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
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22 FS=19 0 0 0 0 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
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23 FS=20 0 0 0 0 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
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24 FS>20 1 1 1 1 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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25 sum 112 112 112 112 |
18
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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26 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
17
diff
changeset
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27 Values from family size distribution with all datasets (PE reads) |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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28 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
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29 Family size fsd_data1.tab fsd_data2.tab fsd_data3.tab fsd_data4.tab |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
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30 FS=1 63 63 63 63 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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31 FS=2 10 10 10 10 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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32 FS=3 24 24 24 24 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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33 FS=4 36 36 36 36 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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34 FS=5 15 15 15 15 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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35 FS=6 30 30 30 30 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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36 FS=7 21 21 21 21 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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37 FS=8 24 24 24 24 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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38 FS=9 18 18 18 18 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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39 FS=10 30 30 30 30 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
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40 FS=11 11 11 11 11 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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41 FS=12 36 36 36 36 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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42 FS=13 39 39 39 39 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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43 FS=14 0 0 0 0 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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44 FS=15 0 0 0 0 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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45 FS=16 0 0 0 0 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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46 FS=17 0 0 0 0 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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47 FS=18 0 0 0 0 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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48 FS=19 0 0 0 0 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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49 FS=20 0 0 0 0 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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50 FS>20 21 21 21 21 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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51 sum 378 378 378 378 |
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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52 |
17
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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53 Dataset: fsd_data1.tab |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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54 max. family size: 21 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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55 absolute frequency: 1 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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56 relative frequency: 0.009 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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57 |
43
f72593bcc8ee
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit 033dd7b750f68e8aa68f327d7d72bd311ddbee4e-dirty
mheinzl
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58 median family size: 1.0 |
f72593bcc8ee
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit 033dd7b750f68e8aa68f327d7d72bd311ddbee4e-dirty
mheinzl
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59 mean family size: 3.375 |
f72593bcc8ee
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit 033dd7b750f68e8aa68f327d7d72bd311ddbee4e-dirty
mheinzl
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60 |
18
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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61 singletons: family size > 20: length of dataset: |
17
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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62 nr. of tags rel. freq of tags rel.freq of PE reads nr. of tags rel. freq of tags nr. of PE reads rel. freq of PE reads total nr. of tags total nr. of PE reads |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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63 fsd_data1.tab 63 0.562 0.167 1 0.009 21 0.056 112 378 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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64 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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65 The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS) |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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66 Whereas the total frequencies were calculated from the whole dataset (=including the DCS). |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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67 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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68 FS >= 1 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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69 unique: total unique total: |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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70 SSCS ab 47 123 0.431 0.339 0.420 0.325 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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71 SSCS ba 59 222 0.488 0.481 0.476 0.468 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
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72 DCS (total) 3 (6) 18 (33) 0.028 0.027 (0.054) 0.050 0.048 (0.087) |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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73 total nr. of tags 109 363 109 112 363 378 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
74 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
75 FS >= 3 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
76 unique: total unique total: |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
77 SSCS ab 14 87 0.341 0.259 0.313 0.224 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
78 SSCS ba 26 187 0.491 0.481 0.495 0.482 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
79 DCS (total) 1 (2) 4 (14) 0.024 0.024 (0.048) 0.014 0.014 (0.049) |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
80 total nr. of tags 41 278 41 42 278 288 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
81 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
82 Values from family size distribution |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
83 duplex ab ba sum |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
84 FS=1 2 30 31 63 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
85 FS=2 0 3 2 5 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
86 FS=3 0 3 5 8 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
87 FS=4 2 3 4 9 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
88 FS=5 0 2 1 3 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
89 FS=6 0 1 4 5 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
90 FS=7 0 1 2 3 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
91 FS=8 0 1 2 3 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
92 FS=9 0 0 2 2 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
93 FS=10 1 1 1 3 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
94 FS=11 0 0 1 1 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
95 FS=12 0 1 2 3 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
96 FS=13 1 1 1 3 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
97 FS=14 0 0 0 0 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
98 FS=15 0 0 0 0 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
99 FS=16 0 0 0 0 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
100 FS=17 0 0 0 0 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
101 FS=18 0 0 0 0 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
102 FS=19 0 0 0 0 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
103 FS=20 0 0 0 0 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
104 FS>20 0 0 1 1 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
105 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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diff
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|
106 Dataset: fsd_data2.tab |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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|
107 max. family size: 21 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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|
108 absolute frequency: 1 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
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|
109 relative frequency: 0.009 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
110 |
43
f72593bcc8ee
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit 033dd7b750f68e8aa68f327d7d72bd311ddbee4e-dirty
mheinzl
parents:
18
diff
changeset
|
111 median family size: 1.0 |
f72593bcc8ee
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit 033dd7b750f68e8aa68f327d7d72bd311ddbee4e-dirty
mheinzl
parents:
18
diff
changeset
|
112 mean family size: 3.375 |
f72593bcc8ee
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit 033dd7b750f68e8aa68f327d7d72bd311ddbee4e-dirty
mheinzl
parents:
18
diff
changeset
|
113 |
18
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
17
diff
changeset
|
114 singletons: family size > 20: length of dataset: |
17
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
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|
115 nr. of tags rel. freq of tags rel.freq of PE reads nr. of tags rel. freq of tags nr. of PE reads rel. freq of PE reads total nr. of tags total nr. of PE reads |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
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|
116 fsd_data2.tab 63 0.562 0.167 1 0.009 21 0.056 112 378 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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parents:
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|
117 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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parents:
diff
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|
118 The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS) |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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|
119 Whereas the total frequencies were calculated from the whole dataset (=including the DCS). |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
120 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
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|
121 FS >= 1 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
122 unique: total unique total: |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
123 SSCS ab 47 123 0.431 0.339 0.420 0.325 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
124 SSCS ba 59 222 0.488 0.481 0.476 0.468 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
125 DCS (total) 3 (6) 18 (33) 0.028 0.027 (0.054) 0.050 0.048 (0.087) |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
126 total nr. of tags 109 363 109 112 363 378 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
127 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
128 FS >= 3 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
129 unique: total unique total: |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
130 SSCS ab 14 87 0.341 0.259 0.313 0.224 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
131 SSCS ba 26 187 0.491 0.481 0.495 0.482 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
132 DCS (total) 1 (2) 4 (14) 0.024 0.024 (0.048) 0.014 0.014 (0.049) |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
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|
133 total nr. of tags 41 278 41 42 278 288 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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parents:
diff
changeset
|
134 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
135 Values from family size distribution |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
136 duplex ab ba sum |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
137 FS=1 2 30 31 63 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
138 FS=2 0 3 2 5 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
139 FS=3 0 3 5 8 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
140 FS=4 2 3 4 9 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
141 FS=5 0 2 1 3 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
142 FS=6 0 1 4 5 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
143 FS=7 0 1 2 3 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
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|
144 FS=8 0 1 2 3 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
changeset
|
145 FS=9 0 0 2 2 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff
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|
146 FS=10 1 1 1 3 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
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147 FS=11 0 0 1 1 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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148 FS=12 0 1 2 3 |
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149 FS=13 1 1 1 3 |
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150 FS=14 0 0 0 0 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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151 FS=15 0 0 0 0 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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152 FS=16 0 0 0 0 |
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153 FS=17 0 0 0 0 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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154 FS=18 0 0 0 0 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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155 FS=19 0 0 0 0 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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156 FS=20 0 0 0 0 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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157 FS>20 0 0 1 1 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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158 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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159 Dataset: fsd_data3.tab |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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160 max. family size: 21 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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161 absolute frequency: 1 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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162 relative frequency: 0.009 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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163 |
43
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164 median family size: 1.0 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit 033dd7b750f68e8aa68f327d7d72bd311ddbee4e-dirty
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165 mean family size: 3.375 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit 033dd7b750f68e8aa68f327d7d72bd311ddbee4e-dirty
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166 |
18
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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167 singletons: family size > 20: length of dataset: |
17
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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168 nr. of tags rel. freq of tags rel.freq of PE reads nr. of tags rel. freq of tags nr. of PE reads rel. freq of PE reads total nr. of tags total nr. of PE reads |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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169 fsd_data3.tab 63 0.562 0.167 1 0.009 21 0.056 112 378 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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170 |
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171 The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS) |
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172 Whereas the total frequencies were calculated from the whole dataset (=including the DCS). |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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173 |
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174 FS >= 1 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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175 unique: total unique total: |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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176 SSCS ab 47 123 0.431 0.339 0.420 0.325 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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177 SSCS ba 59 222 0.488 0.481 0.476 0.468 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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178 DCS (total) 3 (6) 18 (33) 0.028 0.027 (0.054) 0.050 0.048 (0.087) |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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179 total nr. of tags 109 363 109 112 363 378 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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180 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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181 FS >= 3 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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182 unique: total unique total: |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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183 SSCS ab 14 87 0.341 0.259 0.313 0.224 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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184 SSCS ba 26 187 0.491 0.481 0.495 0.482 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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185 DCS (total) 1 (2) 4 (14) 0.024 0.024 (0.048) 0.014 0.014 (0.049) |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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186 total nr. of tags 41 278 41 42 278 288 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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187 |
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188 Values from family size distribution |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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189 duplex ab ba sum |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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190 FS=1 2 30 31 63 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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191 FS=2 0 3 2 5 |
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192 FS=3 0 3 5 8 |
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193 FS=4 2 3 4 9 |
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194 FS=5 0 2 1 3 |
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195 FS=6 0 1 4 5 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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196 FS=7 0 1 2 3 |
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197 FS=8 0 1 2 3 |
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198 FS=9 0 0 2 2 |
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199 FS=10 1 1 1 3 |
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200 FS=11 0 0 1 1 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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201 FS=12 0 1 2 3 |
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202 FS=13 1 1 1 3 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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203 FS=14 0 0 0 0 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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204 FS=15 0 0 0 0 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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205 FS=16 0 0 0 0 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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206 FS=17 0 0 0 0 |
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207 FS=18 0 0 0 0 |
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208 FS=19 0 0 0 0 |
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209 FS=20 0 0 0 0 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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210 FS>20 0 0 1 1 |
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211 |
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212 Dataset: fsd_data4.tab |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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213 max. family size: 21 |
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214 absolute frequency: 1 |
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215 relative frequency: 0.009 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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216 |
43
f72593bcc8ee
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit 033dd7b750f68e8aa68f327d7d72bd311ddbee4e-dirty
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diff
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217 median family size: 1.0 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit 033dd7b750f68e8aa68f327d7d72bd311ddbee4e-dirty
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218 mean family size: 3.375 |
f72593bcc8ee
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit 033dd7b750f68e8aa68f327d7d72bd311ddbee4e-dirty
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219 |
18
c825a29a7d9f
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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220 singletons: family size > 20: length of dataset: |
17
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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221 nr. of tags rel. freq of tags rel.freq of PE reads nr. of tags rel. freq of tags nr. of PE reads rel. freq of PE reads total nr. of tags total nr. of PE reads |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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222 fsd_data4.tab 63 0.562 0.167 1 0.009 21 0.056 112 378 |
2e517a54eedc
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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223 |
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224 The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS) |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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225 Whereas the total frequencies were calculated from the whole dataset (=including the DCS). |
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226 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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227 FS >= 1 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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228 unique: total unique total: |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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229 SSCS ab 47 123 0.431 0.339 0.420 0.325 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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230 SSCS ba 59 222 0.488 0.481 0.476 0.468 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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231 DCS (total) 3 (6) 18 (33) 0.028 0.027 (0.054) 0.050 0.048 (0.087) |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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232 total nr. of tags 109 363 109 112 363 378 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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233 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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234 FS >= 3 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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235 unique: total unique total: |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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236 SSCS ab 14 87 0.341 0.259 0.313 0.224 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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237 SSCS ba 26 187 0.491 0.481 0.495 0.482 |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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238 DCS (total) 1 (2) 4 (14) 0.024 0.024 (0.048) 0.014 0.014 (0.049) |
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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
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239 total nr. of tags 41 278 41 42 278 288 |
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240 |
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241 Values from family size distribution |
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242 duplex ab ba sum |
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243 FS=1 2 30 31 63 |
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244 FS=2 0 3 2 5 |
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245 FS=3 0 3 5 8 |
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246 FS=4 2 3 4 9 |
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247 FS=5 0 2 1 3 |
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248 FS=6 0 1 4 5 |
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249 FS=7 0 1 2 3 |
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250 FS=8 0 1 2 3 |
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251 FS=9 0 0 2 2 |
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252 FS=10 1 1 1 3 |
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253 FS=11 0 0 1 1 |
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254 FS=12 0 1 2 3 |
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255 FS=13 1 1 1 3 |
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256 FS=14 0 0 0 0 |
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257 FS=15 0 0 0 0 |
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258 FS=16 0 0 0 0 |
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259 FS=17 0 0 0 0 |
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260 FS=18 0 0 0 0 |
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261 FS=19 0 0 0 0 |
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262 FS=20 0 0 0 0 |
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263 FS>20 0 0 1 1 |