Mercurial > repos > mheinzl > fsd
changeset 48:e51fe3083b16 draft
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit 9bae9043a53f1e07b502acd1082450adcb6d9e31-dirty
| author | mheinzl |
|---|---|
| date | Wed, 16 Oct 2019 10:06:13 -0400 |
| parents | 1ed4a127c41a |
| children | 6d0281f8d0dc |
| files | fsd.py test-data/fsd_output1.pdf test-data/fsd_output1.tab test-data/fsd_output2.pdf test-data/fsd_output2.tab |
| diffstat | 5 files changed, 21 insertions(+), 22 deletions(-) [+] |
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--- a/fsd.py Wed Aug 28 17:36:28 2019 -0400 +++ b/fsd.py Wed Oct 16 10:06:13 2019 -0400 @@ -735,8 +735,7 @@ sep, sep, sep, sep, sep, sep, sep, sep, sep)) output_file.write("{}{}{}{}{:.3f}{}{:.3f}{}{}{}{:.3f}{}{}{}{:.3f}{}{}{}{}\n\n".format( name_file, sep, singl, sep, float(singl) / len(data), sep, float(singl) / sum(data_o), sep, - last, sep, float(last) / len(data), sep, sum(data_o[data_o > 20]), sep, - float(sum(data_o[data_o > 20])) / sum(data_o), sep, len(data), + last, sep, float(last) / len(data), sep, sum(data_o[data_o > 20]), sep, float(sum(data_o[data_o > 20])) / sum(data_o), sep, len(data), sep, sum(data_o))) # information for FS >= 1 @@ -751,14 +750,14 @@ output_file.write("SSCS ab{}{}{}{}{}{:.3f}{}{:.3f}{}{:.3f}{}{:.3f}\n".format( sep, len(dataAB), sep, sum(dataAB_o), sep, float(len(dataAB)) / (len(dataAB) + len(dataBA) + len(duplTags)), - sep, float(sum(dataAB_o)) / (sum(dataAB_o) + sum(dataBA_o) + sum(duplTags_o)), sep, - float(len(dataAB)) / (len(ab) + len(ba)), sep, float(sum(dataAB_o)) / (sum(ab_o) + sum(ba_o)))) + sep, float(len(dataAB)) / (len(ab) + len(ba)), sep, float(sum(dataAB_o)) / (sum(dataAB_o) + sum(dataBA_o) + sum(duplTags_o)), + sep, float(sum(dataAB_o)) / (sum(ab_o) + sum(ba_o)))) output_file.write("SSCS ba{}{}{}{}{}{:.3f}{}{:.3f}{}{:.3f}{}{:.3f}\n".format( sep, len(dataBA), sep, sum(dataBA_o), sep, - float(len(dataBA)) / (len(dataBA) + len(dataBA) + len(duplTags)), - sep, float(sum(dataBA_o)) / (sum(dataBA_o) + sum(dataBA_o) + sum(duplTags_o)), sep, - float(len(dataBA)) / (len(ba) + len(ba)), - sep, float(sum(dataBA_o)) / (sum(ba_o) + sum(ba_o)))) + float(len(dataBA)) / (len(dataAB) + len(dataBA) + len(duplTags)), + sep, float(len(dataBA)) / (len(ab) + len(ba)), sep, + float(sum(dataBA_o)) / (sum(dataAB_o) + sum(dataBA_o) + sum(duplTags_o)), + sep, float(sum(dataBA_o)) / (sum(ab_o) + sum(ba_o)))) output_file.write( "DCS (total){}{} ({}){}{} ({}){}{:.3f}{}{:.3f} ({:.3f}){}{:.3f}{}{:.3f} ({:.3f})\n".format( sep, len(duplTags), len(duplTags_double), sep, sum(duplTags_o), sum(duplTags_double_o), sep,
--- a/test-data/fsd_output1.tab Wed Aug 28 17:36:28 2019 -0400 +++ b/test-data/fsd_output1.tab Wed Oct 16 10:06:13 2019 -0400 @@ -67,8 +67,8 @@ FS >= 1 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: unique: total unique total: -SSCS ab 47 123 0.431 0.339 0.420 0.325 -SSCS ba 59 222 0.488 0.481 0.476 0.468 +SSCS ab 47 123 0.431 0.420 0.339 0.325 +SSCS ba 59 222 0.541 0.527 0.612 0.587 DCS (total) 3 (6) 18 (33) 0.028 0.027 (0.054) 0.050 0.048 (0.087) total nr. of tags 109 363 109 112 363 378 @@ -146,8 +146,8 @@ FS >= 1 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: unique: total unique total: -SSCS ab 47 123 0.431 0.339 0.420 0.325 -SSCS ba 59 222 0.488 0.481 0.476 0.468 +SSCS ab 47 123 0.431 0.420 0.339 0.325 +SSCS ba 59 222 0.541 0.527 0.612 0.587 DCS (total) 3 (6) 18 (33) 0.028 0.027 (0.054) 0.050 0.048 (0.087) total nr. of tags 109 363 109 112 363 378 @@ -225,8 +225,8 @@ FS >= 1 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: unique: total unique total: -SSCS ab 47 123 0.431 0.339 0.420 0.325 -SSCS ba 59 222 0.488 0.481 0.476 0.468 +SSCS ab 47 123 0.431 0.420 0.339 0.325 +SSCS ba 59 222 0.541 0.527 0.612 0.587 DCS (total) 3 (6) 18 (33) 0.028 0.027 (0.054) 0.050 0.048 (0.087) total nr. of tags 109 363 109 112 363 378 @@ -304,8 +304,8 @@ FS >= 1 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: unique: total unique total: -SSCS ab 47 123 0.431 0.339 0.420 0.325 -SSCS ba 59 222 0.488 0.481 0.476 0.468 +SSCS ab 47 123 0.431 0.420 0.339 0.325 +SSCS ba 59 222 0.541 0.527 0.612 0.587 DCS (total) 3 (6) 18 (33) 0.028 0.027 (0.054) 0.050 0.048 (0.087) total nr. of tags 109 363 109 112 363 378
--- a/test-data/fsd_output2.tab Wed Aug 28 17:36:28 2019 -0400 +++ b/test-data/fsd_output2.tab Wed Oct 16 10:06:13 2019 -0400 @@ -67,8 +67,8 @@ FS >= 1 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: unique: total unique total: -SSCS ab 47 123 0.431 0.339 0.420 0.325 -SSCS ba 59 222 0.488 0.481 0.476 0.468 +SSCS ab 47 123 0.431 0.420 0.339 0.325 +SSCS ba 59 222 0.541 0.527 0.612 0.587 DCS (total) 3 (6) 18 (33) 0.028 0.027 (0.054) 0.050 0.048 (0.087) total nr. of tags 109 363 109 112 363 378 @@ -146,8 +146,8 @@ FS >= 1 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: unique: total unique total: -SSCS ab 47 123 0.431 0.339 0.420 0.325 -SSCS ba 59 222 0.488 0.481 0.476 0.468 +SSCS ab 47 123 0.431 0.420 0.339 0.325 +SSCS ba 59 222 0.541 0.527 0.612 0.587 DCS (total) 3 (6) 18 (33) 0.028 0.027 (0.054) 0.050 0.048 (0.087) total nr. of tags 109 363 109 112 363 378 @@ -225,8 +225,8 @@ FS >= 1 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: unique: total unique total: -SSCS ab 47 123 0.431 0.339 0.420 0.325 -SSCS ba 59 222 0.488 0.481 0.476 0.468 +SSCS ab 47 123 0.431 0.420 0.339 0.325 +SSCS ba 59 222 0.541 0.527 0.612 0.587 DCS (total) 3 (6) 18 (33) 0.028 0.027 (0.054) 0.050 0.048 (0.087) total nr. of tags 109 363 109 112 363 378