Mercurial > repos > mheinzl > variant_analyzer2

diff read2mut.py @ 20:ac07ff15dcfd draft

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planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8
author mheinzl
date Mon, 22 Feb 2021 15:05:26 +0000
parents 858ca8b7ad43
children b67d4c7da780
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line diff
--- a/read2mut.py	Mon Feb 22 15:02:21 2021 +0000
+++ b/read2mut.py	Mon Feb 22 15:05:26 2021 +0000
@@ -101,8 +101,10 @@
         sys.exit("Error: thresh is '{}', but only non-negative integers allowed".format(thresh))
     if phred_score < 0:
         sys.exit("Error: phred is '{}', but only non-negative integers allowed".format(phred_score))
-    if trim < 0:
-        sys.exit("Error: trim is '{}', but only non-negative integers allowed".format(thresh))
+    if trim5 < 0:
+        sys.exit("Error: trim5 is '{}', but only non-negative integers allowed".format(trim5))
+    if trim3 < 0:
+        sys.exit("Error: trim3 is '{}', but only non-negative integers allowed".format(trim3))
 
     # load dicts
     with open(json_file, "r") as f: