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annotate NCBO_services/get_ontology_view.java @ 20:1910c878378c

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get_ontology menu improved (Automatically generated), source added, readme improved
author Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
date Wed, 25 Jan 2012 19:49:20 +0100
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1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved
Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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1 package es.upm.fi.dia.oeg.ncbo.galaxy;
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved
Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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2
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3 import java.io.BufferedReader;
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved
Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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4 import java.io.BufferedWriter;
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved
Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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5 import java.io.IOException;
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6 import java.io.InputStream;
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved
Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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7 import java.io.InputStreamReader;
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved
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8 import java.io.OutputStreamWriter;
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved
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9
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved
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10 import org.apache.http.HttpEntity;
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved
Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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11 import org.apache.http.HttpResponse;
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved
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12 import org.apache.http.client.ClientProtocolException;
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved
Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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13 import org.apache.http.client.HttpClient;
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved
Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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14 import org.apache.http.client.methods.HttpGet;
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved
Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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15 import org.apache.http.client.methods.HttpPost;
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved
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16 import org.apache.http.impl.client.DefaultHttpClient;
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved
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18 public class get_ontology_view {
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20 /**
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21 * @param args
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22 * @throws IOException
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Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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23 * @throws ClientProtocolException
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Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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24 */
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25 public static void main(String[] args) throws ClientProtocolException, IOException {
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Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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26 // http://www.bioontology.org/wiki/index.php/BioPortal_REST_services#Download_a_specific_ontology_view_based_on_the_ontology_view_version_id
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27 // Download a specific ontology view based on the ontology view version id
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29 String api_key = args [0];
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30 String ontology_view_id = args [1];
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32 HttpClient client = new DefaultHttpClient();
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33 // http://rest.bioontology.org/bioportal/ontologies/download/43072?apikey=YourAPIKey
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Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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34 HttpGet get = new HttpGet("http://rest.bioontology.org/bioportal/ontologies/download/" + ontology_view_id + "?apikey=" + api_key);
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved
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36 HttpResponse response = client.execute(get);
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved
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37 HttpEntity entity = response.getEntity();
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38 if (entity != null) {
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39 InputStream instream = entity.getContent();
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40 InputStreamReader is=new InputStreamReader(instream);
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved
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41 BufferedReader br=new BufferedReader(is);
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved
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42 String read=br.readLine();
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43 BufferedWriter bw = new BufferedWriter(new OutputStreamWriter(System.out));
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved
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44 while(read!=null){
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45 // System.out.println(read);
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46 bw.write(read);
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47 bw.newLine();
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48 read=br.readLine();
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49 }
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50 bw.close();
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51 instream.close();
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52 }
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53 }
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54 }