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26
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1
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2
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3
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4 =============
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5 NCBO Services
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6 =============
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7
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8
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9
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10 INSTALLATION
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11 ============
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12
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13 1.- Stop Galaxy.
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14
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15 2.- Copy the .jar files to /galaxy-dist/tool-data/shared/jars/
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16
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17 3.- Create directory /galaxy-dist/tools/NCBO_services/
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18
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19 4.- Copy the .xml files to /galaxy-dist/tools/NCBO_services/
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20
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21 5.- Add the following lines to /galaxy-dist/tool_conf.xml:
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22
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23 <section name="NCBO services" id="NCBO_services">
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24 <tool file="NCBO_services/get_ontology.xml"/>
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25 <tool file="NCBO_services/extract.xml"/>
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26 <tool file="NCBO_services/get_ontology_view.xml"/>
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27 <tool file="NCBO_services/ncbo_annotator.xml"/>
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28 <tool file="NCBO_services/ncbo_recommender.xml"/>
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29 <tool file="NCBO_services/ncbo_search.xml"/>
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30 <tool file="NCBO_services/ncbo_resourceIndex.xml"/>
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31 </section>
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32
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33 6.- Start Galaxy.
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34
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35
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36
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37 USAGE
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38 =====
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39
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40 Each tool has a different functionality, but all of them need a
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41 bioportal API key. The API key can be obtained by creating an account at
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42 bioportal (http://bioportal.bioontology.org/).
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43
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44
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45
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46 CONTACT
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47 =======
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48
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49 Please send any request or comment to mikel.egana.aranguren@gmail.com or
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50 jose.minya@gmail.com.
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51
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52
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53
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54 ACKNOWLEDGEMENTS
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55 ================
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56
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57 The work on get_ontology, extract and get_ontology_view is funded by the
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58 Marie Curie Cofund program of the EU, FP7.
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59
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60
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61
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62 COPYRIGHT AND LICENSE
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63 =====================
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64
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65 get_ontology, extract and get_ontology_view are copyright of Mikel
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66 Egaña Aranguren (2012), and they are distributed under a GPL 3 license
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67 (http://www.gnu.org/licenses/)
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68
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69
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70
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71
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72
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73
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74
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75
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76
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77
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78
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79
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80
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81
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82
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