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annotate NCBO_services/get_ontology.xml @ 1:d0cff9cccc25

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Second version
author Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
date Sat, 31 Dec 2011 16:20:38 +0100
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children 86a5e3f4f32f
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Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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1 <tool id="get_ontology" name="Get ontology by id" version="1.0.1">
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2 <description>Retrieves an ontology from bioportal using its id</description>
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3 <command>java -jar ${__tool_data_path__}/shared/jars/ncbo_galaxy.jar $api_key $ontology_id > $output </command>
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4 <inputs>
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5 <param name="api_key" type="text" size="100" label="BioPortal API key" />
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6 <param name="ontology_id" type="text" size="100" label="Ontology ID from bioportal" />
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7 </inputs>
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8 <outputs>
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9 <data format="text" name="output" />
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10 </outputs>
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11 <tests>
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12 <test>
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13 <param name="api_key" value="74c12fc6-9423-455a-a619-b94f47d1951b"/>
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14 <param name="ontology_id" value="1522"/>
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15 </test>
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16 </tests>
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17 <help>
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18
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19 **Usage**
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20
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21 Enter bioportal API key and ontology id (e.g. 1522 for BioPAX), and the ontology will be retrieved.
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22
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23 **Contact**
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24
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25 Please send any request or comment to mikel.egana.aranguren@gmail.com.
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Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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27 **More information**
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Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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29 http://bioportal.bioontology.org
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30
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31 </help>
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32
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33 </tool>