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comparison NCBO_services/README @ 26:354aa87772e0

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author jose-minyarro
date Mon, 19 Mar 2012 08:25:59 -0400
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4 =============
5 NCBO Services
6 =============
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10 INSTALLATION
11 ============
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13 1.- Stop Galaxy.
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15 2.- Copy the .jar files to /galaxy-dist/tool-data/shared/jars/
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17 3.- Create directory /galaxy-dist/tools/NCBO_services/
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19 4.- Copy the .xml files to /galaxy-dist/tools/NCBO_services/
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21 5.- Add the following lines to /galaxy-dist/tool_conf.xml:
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23 <section name="NCBO services" id="NCBO_services">
24 <tool file="NCBO_services/get_ontology.xml"/>
25 <tool file="NCBO_services/extract.xml"/>
26 <tool file="NCBO_services/get_ontology_view.xml"/>
27 <tool file="NCBO_services/ncbo_annotator.xml"/>
28 <tool file="NCBO_services/ncbo_recommender.xml"/>
29 <tool file="NCBO_services/ncbo_search.xml"/>
30 <tool file="NCBO_services/ncbo_resourceIndex.xml"/>
31 </section>
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33 6.- Start Galaxy.
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37 USAGE
38 =====
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40 Each tool has a different functionality, but all of them need a
41 bioportal API key. The API key can be obtained by creating an account at
42 bioportal (http://bioportal.bioontology.org/).
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46 CONTACT
47 =======
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49 Please send any request or comment to mikel.egana.aranguren@gmail.com or
50 jose.minya@gmail.com.
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54 ACKNOWLEDGEMENTS
55 ================
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57 The work on get_ontology, extract and get_ontology_view is funded by the
58 Marie Curie Cofund program of the EU, FP7.
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62 COPYRIGHT AND LICENSE
63 =====================
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65 get_ontology, extract and get_ontology_view are copyright of Mikel
66 Egaña Aranguren (2012), and they are distributed under a GPL 3 license
67 (http://www.gnu.org/licenses/)
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