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comparison NCBO_services/get_ontology.xml @ 1:d0cff9cccc25

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Second version
author Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
date Sat, 31 Dec 2011 16:20:38 +0100
parents e25b2c00fffd
children 86a5e3f4f32f
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0:e25b2c00fffd 1:d0cff9cccc25
1 <tool id="get_ontology" name="Get ontology by id" version="1.0.0"> 1 <tool id="get_ontology" name="Get ontology by id" version="1.0.1">
2 <description>Retrieves an ontology from bioportal using its id</description> 2 <description>Retrieves an ontology from bioportal using its id</description>
3 <command>java -jar ${__tool_data_path__}/shared/jars/ncbo_galaxy.jar $api_key $ontology_id > $output </command> 3 <command>java -jar ${__tool_data_path__}/shared/jars/ncbo_galaxy.jar $api_key $ontology_id > $output </command>
4 <inputs> 4 <inputs>
5 <param name="api_key" type="text" size="100" label="BioPortal API key" /> 5 <param name="api_key" type="text" size="100" label="BioPortal API key" />
6 <param name="ontology_id" type="text" size="100" label="Ontology ID from bioportal" /> 6 <param name="ontology_id" type="text" size="100" label="Ontology ID from bioportal" />
21 Enter bioportal API key and ontology id (e.g. 1522 for BioPAX), and the ontology will be retrieved. 21 Enter bioportal API key and ontology id (e.g. 1522 for BioPAX), and the ontology will be retrieved.
22 22
23 **Contact** 23 **Contact**
24 24
25 Please send any request or comment to mikel.egana.aranguren@gmail.com. 25 Please send any request or comment to mikel.egana.aranguren@gmail.com.
26
27 **More information**
28
29 http://bioportal.bioontology.org
26 30
27 </help> 31 </help>
28 32
29 </tool> 33 </tool>