Mercurial > repos > mikel-egana-aranguren > oppl
comparison config_oppl_for_galaxy.sh @ 19:cc270db37d33 draft
Directories re-arranged
| author | Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> |
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| date | Sat, 06 Oct 2012 21:50:39 +0200 |
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| 18:d3616fac4ca5 | 19:cc270db37d33 |
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| 1 #!/bin/sh | |
| 2 | |
| 3 # Remove Kate backup files | |
| 4 rm *~ | |
| 5 | |
| 6 # Wrapper does not work | |
| 7 # cp stderr_wrapper.py /home/mikel/galaxy/galaxy-dist/tools/OPPL/ | |
| 8 | |
| 9 # Local installation | |
| 10 | |
| 11 cp oppl.xml /home/mikel/galaxy/galaxy-dist/tools/OPPL/ | |
| 12 cp inference.xml /home/mikel/galaxy/galaxy-dist/tools/OPPL/ | |
| 13 cp query.xml /home/mikel/galaxy/galaxy-dist/tools/OPPL/ | |
| 14 cp oppl_query.xml /home/mikel/galaxy/galaxy-dist/tools/OPPL/ | |
| 15 cp merge.xml /home/mikel/galaxy/galaxy-dist/tools/OPPL/ | |
| 16 | |
| 17 cp oppl_galaxy.jar /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ | |
| 18 cp inference.jar /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ | |
| 19 cp query.jar /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ | |
| 20 cp oppl_query.jar /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ | |
| 21 cp merge.jar /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ | |
| 22 | |
| 23 cp -r FaCT++-linux-v1.5.2 /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ | |
| 24 | |
| 25 cp -r oppl_galaxy_lib /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ | |
| 26 cp -r inference_lib /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ | |
| 27 cp -r query_lib /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ | |
| 28 cp -r oppl_query_lib /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ | |
| 29 cp -r merge_lib /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ | |
| 30 | |
| 31 # Copy src from Eclipse for release | |
| 32 | |
| 33 cp /home/mikel/UPM/Eclipse_Workspace/OPPL_Galaxy/src/es/upm/fi/dia/oeg/oppl/galaxy/OPPLGalaxy.java ./src/ | |
| 34 cp /home/mikel/UPM/Eclipse_Workspace/OPPL_Galaxy/src/es/upm/fi/dia/oeg/oppl/galaxy/GalaxyOWLAPI.java ./src/ | |
| 35 cp /home/mikel/UPM/Eclipse_Workspace/OPPL_Galaxy/src/es/upm/fi/dia/oeg/oppl/galaxy/InferenceGalaxy.java ./src/ | |
| 36 cp /home/mikel/UPM/Eclipse_Workspace/OPPL_Galaxy/src/es/upm/fi/dia/oeg/oppl/galaxy/OWLQueryGalaxy.java ./src/ | |
| 37 cp /home/mikel/UPM/Eclipse_Workspace/OPPL_Galaxy/src/es/upm/fi/dia/oeg/oppl/galaxy/OWLQueryGalaxy.java ./src/ | |
| 38 cp /home/mikel/UPM/Eclipse_Workspace/OPPL_Galaxy/src/es/upm/cbgp/opplquery/oppl/galaxy/OPPLQueryGalaxy.java ./src/ | |
| 39 cp /home/mikel/UPM/Eclipse_Workspace/OPPL_Galaxy/src/es/upm/cbgp/opplquery/oppl/galaxy/MergeImportedOntologies.java ./src/ | |
| 40 | |
| 41 # Copy files for google code release ('Backup' release, not open to public) | |
| 42 | |
| 43 cp *.jar /home/mikel/UPM/Paper/SWAT4LS_2011/JBS_review/oppl-galaxy.src/ | |
| 44 cp *.xml /home/mikel/UPM/Paper/SWAT4LS_2011/JBS_review/oppl-galaxy.src/ | |
| 45 cp -r *_lib /home/mikel/UPM/Paper/SWAT4LS_2011/JBS_review/oppl-galaxy.src/ | |
| 46 cp -r FaCT++-* /home/mikel/UPM/Paper/SWAT4LS_2011/JBS_review/oppl-galaxy.src/ | |
| 47 cp -r src /home/mikel/UPM/Paper/SWAT4LS_2011/JBS_review/oppl-galaxy.src/ | |
| 48 cp -r test-data /home/mikel/UPM/Paper/SWAT4LS_2011/JBS_review/oppl-galaxy.src/ | |
| 49 cp README /home/mikel/UPM/Paper/SWAT4LS_2011/JBS_review/oppl-galaxy.src/ | |
| 50 | |
| 51 # ##### NOTES | |
| 52 | |
| 53 # To kill Galaxy easily: ./run.sh --reload | |
| 54 | |
| 55 # Usual mercurial session: update, status, add, commit -m 'Changes', push | |
| 56 | |
| 57 | |
| 58 |