Mercurial > repos > mikel-egana-aranguren > oppl
diff config_oppl_for_galaxy.sh @ 19:cc270db37d33 draft
Directories re-arranged
| author | Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> |
|---|---|
| date | Sat, 06 Oct 2012 21:50:39 +0200 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/config_oppl_for_galaxy.sh Sat Oct 06 21:50:39 2012 +0200 @@ -0,0 +1,58 @@ +#!/bin/sh + +# Remove Kate backup files +rm *~ + +# Wrapper does not work +# cp stderr_wrapper.py /home/mikel/galaxy/galaxy-dist/tools/OPPL/ + +# Local installation + +cp oppl.xml /home/mikel/galaxy/galaxy-dist/tools/OPPL/ +cp inference.xml /home/mikel/galaxy/galaxy-dist/tools/OPPL/ +cp query.xml /home/mikel/galaxy/galaxy-dist/tools/OPPL/ +cp oppl_query.xml /home/mikel/galaxy/galaxy-dist/tools/OPPL/ +cp merge.xml /home/mikel/galaxy/galaxy-dist/tools/OPPL/ + +cp oppl_galaxy.jar /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ +cp inference.jar /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ +cp query.jar /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ +cp oppl_query.jar /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ +cp merge.jar /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ + +cp -r FaCT++-linux-v1.5.2 /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ + +cp -r oppl_galaxy_lib /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ +cp -r inference_lib /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ +cp -r query_lib /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ +cp -r oppl_query_lib /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ +cp -r merge_lib /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/ + +# Copy src from Eclipse for release + +cp /home/mikel/UPM/Eclipse_Workspace/OPPL_Galaxy/src/es/upm/fi/dia/oeg/oppl/galaxy/OPPLGalaxy.java ./src/ +cp /home/mikel/UPM/Eclipse_Workspace/OPPL_Galaxy/src/es/upm/fi/dia/oeg/oppl/galaxy/GalaxyOWLAPI.java ./src/ +cp /home/mikel/UPM/Eclipse_Workspace/OPPL_Galaxy/src/es/upm/fi/dia/oeg/oppl/galaxy/InferenceGalaxy.java ./src/ +cp /home/mikel/UPM/Eclipse_Workspace/OPPL_Galaxy/src/es/upm/fi/dia/oeg/oppl/galaxy/OWLQueryGalaxy.java ./src/ +cp /home/mikel/UPM/Eclipse_Workspace/OPPL_Galaxy/src/es/upm/fi/dia/oeg/oppl/galaxy/OWLQueryGalaxy.java ./src/ +cp /home/mikel/UPM/Eclipse_Workspace/OPPL_Galaxy/src/es/upm/cbgp/opplquery/oppl/galaxy/OPPLQueryGalaxy.java ./src/ +cp /home/mikel/UPM/Eclipse_Workspace/OPPL_Galaxy/src/es/upm/cbgp/opplquery/oppl/galaxy/MergeImportedOntologies.java ./src/ + +# Copy files for google code release ('Backup' release, not open to public) + +cp *.jar /home/mikel/UPM/Paper/SWAT4LS_2011/JBS_review/oppl-galaxy.src/ +cp *.xml /home/mikel/UPM/Paper/SWAT4LS_2011/JBS_review/oppl-galaxy.src/ +cp -r *_lib /home/mikel/UPM/Paper/SWAT4LS_2011/JBS_review/oppl-galaxy.src/ +cp -r FaCT++-* /home/mikel/UPM/Paper/SWAT4LS_2011/JBS_review/oppl-galaxy.src/ +cp -r src /home/mikel/UPM/Paper/SWAT4LS_2011/JBS_review/oppl-galaxy.src/ +cp -r test-data /home/mikel/UPM/Paper/SWAT4LS_2011/JBS_review/oppl-galaxy.src/ +cp README /home/mikel/UPM/Paper/SWAT4LS_2011/JBS_review/oppl-galaxy.src/ + +# ##### NOTES + +# To kill Galaxy easily: ./run.sh --reload + +# Usual mercurial session: update, status, add, commit -m 'Changes', push + + +