Mercurial > repos > mikel-egana-aranguren > sparql_galaxy

annotate galaxy-dist/tools/sparql_galaxy/SPARQLGalaxy.xml @ 3:24ad2706526c draft

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Reimplemented in Python, using RDFLib
author mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
date Fri, 25 Apr 2014 15:42:31 +0200
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children 6501986529b0
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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1 <tool id="SPARQLGalaxy" name="Execute an SPARQL query against an RDF file" version="1.0.1">
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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2 <description>It executes an SPARQL query against the input RDF file and generates an HTML file with the variables and bound entities</description>
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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3 <command interpreter="python">
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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4 sparql.py $ontology "$pasted_query" > $output 2>/dev/null
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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5 </command>
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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6 <inputs>
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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7 <param name="ontology" type="data" format="rdf" label="Input RDF file"/>
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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8 <param name="pasted_query" type="text" area="True" size="10x50" label="SPARQL Query" value="SELECT * WHERE { ?s ?p ?o }">
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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9 <sanitizer sanitize="False"/>
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10 </param>
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11 </inputs>
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12 <outputs>
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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13 <data format="html" name="output" />
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14 </outputs>
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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15 <help>
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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16
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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17 **Important note**
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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19 RDFLib must be installed on the system (http://github.com/RDFLib/rdflib).
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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20
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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21 **Usage**
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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23 An RDF file (in any format that RDFLib can accept) and a SPARQL query are needed. See bundle for examples.
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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24
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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25 **More information**
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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27 Galaxy public instance with SPARQL-Galaxy pre-installed:
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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29 http://biordf.org:8983/
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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31 RDF:
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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33 http://www.w3.org/standards/techs/rdf
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34
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35 SPARQL:
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37 http://www.w3.org/standards/techs/sparql
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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38
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39 **Contact**
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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40
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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41 Please send any request or comment to mikel.egana.aranguren@gmail.com.
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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43 </help>
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45 </tool>