Mercurial > repos > mikel-egana-aranguren > sparql_galaxy

annotate README @ 2:b8bf1af83841 draft

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Paste query added, query engine improved, examples added
author Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
date Wed, 04 Dec 2013 08:17:00 +0100
parents 117a4b4c002d
children 24ad2706526c
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1 INSTALLATION VIA TOOL-SHED
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2 ==========================
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4 1.- Install through Admin >> Search and browse tool sheds
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6 2.- Copy SPARQLGalaxy.jar and SPARQLGalaxy_TEXT.jar to galaxy-dist/tool-data/shared/jars/
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9 INSTALLATION VIA MERCURIAL
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10 ==========================
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12 1.- Stop Galaxy.
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14 2.- Move to galaxy-dist/tools/
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16 3.- Clone the SPARQL-Galaxy repository with mercurial:
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18 hg clone http://mikel-egana-aranguren@toolshed.g2.bx.psu.edu/repos/mikel-egana-aranguren/sparql_galaxy
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20 4.- Move to galaxy-dist/tools/sparql_galaxy and copy SPARQLGalaxy.jar and SPARQLGalaxy_TEXT.jar to galaxy-dist/tool-data/shared/jars/
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22 5.- Add the following lines to /galaxy-dist/tool_conf.xml:
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24 <section name="SPARQL-Galaxy" id="SPARQLGalaxy">
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25 <tool file="sparql_galaxy/SPARQLGalaxy.xml"/>
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26 </section>
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28 6.- Start Galaxy.
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30 For updates:
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32 1.- Stop Galaxy.
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34 2.- Move to galaxy-dist/tools/sparql_galaxy/
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36 3.- Pull changes and update working copy with mercurial:
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38 hg pull
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39 hg update
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41 4.- Copy SPARQLGalaxy.jar to galaxy-dist/tool-data/shared/jars/
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43 5.- Only edit galaxy-dist/tool_conf.xml in case a tool (an XML file) has been added/removed.
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45 6.- Start Galaxy.
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49 MANUAL INSTALLATION (DIRECT DOWNLOAD)
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50 =====================================
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52 Download and uncompress anywhere you like, and then:
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54 1.- Stop Galaxy.
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56 2.- Copy SPARQLGalaxy.jar and SPARQLGalaxy_TEXT.jar to galaxy-dist/tool-data/shared/jars/
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58 3.- Create directory galaxy-dist/tools/sparql_galaxy/
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60 4.- Copy SPARQLGalaxy.xml to galaxy-dist/tools/sparql_galaxy/
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62 5.- Add the following lines to /galaxy-dist/tool_conf.xml:
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64 <section name="SPARQL-Galaxy" id="SPARQLGalaxy">
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65 <tool file="sparql_galaxy/SPARQLGalaxy.xml"/>
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66 </section>
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68 6.- Start Galaxy.
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72 CONTACT
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73 =======
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75 Please send any request or comment to mikel.egana.aranguren@gmail.com.
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79 ACKNOWLEDGEMENTS
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80 ================
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82 This work is funded by the Marie Curie Cofund program of the EU, FP7,
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83 and the Isaac Peral Program.
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87 COPYRIGHT AND LICENSE
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88 =====================
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90 Copyright (c) 2011 Mikel Egaña Aranguren, Alejandro Rodriguez Gonzalez
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92 SPARQL-Galaxy is free software: you can redistribute it and/or modify it under the
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93 terms of the GNU General Public License as published by the Free
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94 Software Foundation, either version 3 of the License, or (at your
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95 option) any later version.
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97 This program is distributed in the hope that it will be useful,
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98 but WITHOUT ANY WARRANTY; without even the implied warranty of
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99 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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100 GNU General Public License for more details.
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102 You should have received a copy of the GNU General Public License
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103 along with this program. If not, see <http://www.gnu.org/licenses/>.
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105 JENA has its own license.
117a4b4c002d Added README but installation procedure not tested yet, pushed for backup
Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
diff changeset
106
117a4b4c002d Added README but installation procedure not tested yet, pushed for backup
Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
diff changeset
107