annotate commits.log @ 18:f04f40a36cc8

Latest changes from Belinda and Cathy. Webb's updates to the Fst tools.
author Richard Burhans <burhans@bx.psu.edu>
date Tue, 23 Oct 2012 12:41:52 -0400
parents fdb4240fb565
children d6b961721037
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
18
f04f40a36cc8 Latest changes from Belinda and Cathy. Webb's updates to the Fst tools.
Richard Burhans <burhans@bx.psu.edu>
parents: 13
diff changeset
1
f04f40a36cc8 Latest changes from Belinda and Cathy. Webb's updates to the Fst tools.
Richard Burhans <burhans@bx.psu.edu>
parents: 13
diff changeset
2 :8703e16fca01
f04f40a36cc8 Latest changes from Belinda and Cathy. Webb's updates to the Fst tools.
Richard Burhans <burhans@bx.psu.edu>
parents: 13
diff changeset
3 cathy 2012-10-04 11:42
f04f40a36cc8 Latest changes from Belinda and Cathy. Webb's updates to the Fst tools.
Richard Burhans <burhans@bx.psu.edu>
parents: 13
diff changeset
4 More changes by Cathy, mostly in Phylogenetic Tree and Prepare Input,
f04f40a36cc8 Latest changes from Belinda and Cathy. Webb's updates to the Fst tools.
Richard Burhans <burhans@bx.psu.edu>
parents: 13
diff changeset
5 including some UI adjustments.
13
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
6
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
7 :7b775e5b68b4
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
8 cathy 2012-09-28 00:55
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
9 Galaxy didn't like my RST syntax. :-/
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
10
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
11 :9b5b4f73bd98
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
12 cathy 2012-09-28 00:08
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
13 Tweaks by Cathy, e.g. adjusting text where renamed tools are mentioned.
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
14 Also riemerized through first section, "Initial Analysis".
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
15
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
16 :93eeef51be96
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
17 cathy 2012-09-27 14:03
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
18 Fixed datatype bugs in the Filter SNPs and Aggregate Individuals tools.
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
19
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
20 :119e1e904cc4
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
21 cathy 2012-09-26 15:38
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
22 Restored modify_snp_table.py from the archive, since it's still used by the
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
23 Filter SNPs and Aggregate Individuals tools.
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
24
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
25 :cc508d55cc9d
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
26 cathy 2012-09-26 15:16
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
27 Tweaked description for the Prepare Input tool.
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
28
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
29 :cdb8430b1659
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
30 cathy 2012-09-26 15:10
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
31 Added ": " at the beginning of each description to separate it from the name.
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
32
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
33 :3286bdea6b3d
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
34 cathy 2012-09-26 13:01
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
35 Clarified tool names and descriptions.
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
36
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
37 :8a9bdfc0d31f
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
38 cathy 2012-09-19 17:15
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
39 Edited docs in aggregate_gd_indivs.xml: clarified "What it does", reformatted
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
40 example data.
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
41
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
42 :f7c6a18af605
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
43 cathy 2012-09-19 11:31
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
44 Edited docs in specify.xml: clarified "What it does", reformatted example data.
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
45