Mercurial > repos > miller-lab > genome_diversity
comparison restore_attributes.xml @ 26:91e835060ad2
Updates to Admixture, Aggregate Individuals, and Restore Attributes to support gd_genotype
author | Richard Burhans <burhans@bx.psu.edu> |
---|---|
date | Mon, 03 Jun 2013 12:29:29 -0400 |
parents | 95a05c1ef5d5 |
children |
comparison
equal
deleted
inserted
replaced
25:cba0d7a63b82 | 26:91e835060ad2 |
---|---|
1 <tool id="gd_restore_attributes" name="Restore Attributes" version="1.0.0"> | 1 <tool id="gd_restore_attributes" name="Restore Attributes" version="1.1.0"> |
2 <description>: Fill in missing properties for a gd_snp dataset</description> | 2 <description>: Fill in missing properties for a gd_snp or gd_genotype dataset</description> |
3 | 3 |
4 <command interpreter="python"> | 4 <command interpreter="python"> |
5 cp.py "$dst" "$output" | 5 cp.py "$dst" "$output" |
6 </command> | 6 </command> |
7 | 7 |
8 <inputs> | 8 <inputs> |
9 <param name="src" type="data" format="gd_snp" label="SNP dataset to copy attributes from" /> | 9 <conditional name="input_type"> |
10 <param name="dst" type="data" format="gd_snp" label="SNP dataset to receive attributes" /> | 10 <param name="choice" type="select" format="integer" label="Input format"> |
11 <option value="0" selected="true">gd_snp</option> | |
12 <option value="1">gd_genotype</option> | |
13 </param> | |
14 | |
15 <when value="0"> | |
16 <param name="input" type="data" format="gd_snp" label="SNP dataset to copy attributes from" /> | |
17 <param name="dst" type="data" format="gd_snp" label="SNP dataset to receive attributes" /> | |
18 </when> | |
19 <when value="1"> | |
20 <param name="input" type="data" format="gd_genotype" label="Genotype dataset to copy attributes from" /> | |
21 <param name="dst" type="data" format="gd_genotype" label="Genotype dataset to receive attributes" /> | |
22 </when> | |
23 </conditional> | |
11 </inputs> | 24 </inputs> |
12 | 25 |
13 <outputs> | 26 <outputs> |
14 <data name="output" format="gd_snp" metadata_source="src" /> | 27 <data name="output" format="input" format_source="input" metadata_source="input" /> |
15 </outputs> | 28 </outputs> |
16 | 29 |
17 <help> | 30 <help> |
18 | 31 |
19 **Dataset formats** | 32 **Dataset formats** |
20 | 33 |
21 All of the input and output datasets are in gd_snp_ format. (`Dataset missing?`_) | 34 All of the input and output datasets are in gd_snp_ or gd_genotype_ format. (`Dataset missing?`_) |
22 | 35 |
23 .. _gd_snp: ./static/formatHelp.html#gd_snp | 36 .. _gd_snp: ./static/formatHelp.html#gd_snp |
37 .. _gd_genotype: ./static/formatHelp.html#gd_genotype | |
24 .. _Dataset missing?: ./static/formatHelp.html | 38 .. _Dataset missing?: ./static/formatHelp.html |
25 | 39 |
26 ----- | 40 ----- |
27 | 41 |
28 **What it does** | 42 **What it does** |