Mercurial > repos > miller-lab > genome_diversity

comparison add_fst_column.xml @ 22:95a05c1ef5d5

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update to devshed revision aaece207bd01
author Richard Burhans <burhans@bx.psu.edu>
date Mon, 11 Mar 2013 11:28:06 -0400
parents d6b961721037
children 248b06e86022
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21:d6b961721037 22:95a05c1ef5d5
13 <param name="input" type="data" format="gd_snp" label="SNP dataset" /> 13 <param name="input" type="data" format="gd_snp" label="SNP dataset" />
14 <param name="p1_input" type="data" format="gd_indivs" label="Population 1 individuals" /> 14 <param name="p1_input" type="data" format="gd_indivs" label="Population 1 individuals" />
15 <param name="p2_input" type="data" format="gd_indivs" label="Population 2 individuals" /> 15 <param name="p2_input" type="data" format="gd_indivs" label="Population 2 individuals" />
16 16
17 <param name="data_source" type="select" format="integer" label="Frequency metric"> 17 <param name="data_source" type="select" format="integer" label="Frequency metric">
18 <option value="0" selected="true">sequence coverage</option> 18 <option value="0">sequence coverage</option>
19 <option value="1">estimated genotype</option> 19 <option value="1" selected="true">estimated genotype</option>
20 </param> 20 </param>
21 21
22 <param name="min_reads" type="integer" min="0" value="0" label="Minimum total read count for a population" /> 22 <param name="min_reads" type="integer" min="0" value="0" label="Minimum total read count for a population" />
23 <param name="min_qual" type="integer" min="0" value="0" label="Minimum individual genotype quality" /> 23 <param name="min_qual" type="integer" min="0" value="0" label="Minimum individual genotype quality" />
24 24
31 <option value="0">retain</option> 31 <option value="0">retain</option>
32 <option value="1" selected="true">delete</option> 32 <option value="1" selected="true">delete</option>
33 </param> 33 </param>
34 34
35 <param name="biased" type="select" label="FST estimator"> 35 <param name="biased" type="select" label="FST estimator">
36 <option value="0" selected="true">Wright's original definition</option> 36 <option value="0">Wright's original definition</option>
37 <option value="1">the Weir-Cockerham estimator</option> 37 <option value="1">the Weir-Cockerham estimator</option>
38 <option value="2">the Reich-Patterson estimator</option> 38 <option value="2" selected="true">the Reich-Patterson estimator</option>
39 </param> 39 </param>
40 40
41 </inputs> 41 </inputs>
42 42
43 <outputs> 43 <outputs>