Mercurial > repos > miller-lab > genome_diversity

comparison add_fst_column.xml @ 10:9b92372de9f6

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rename snp to gsSnp, sap to gdSap
author Richard Burhans <burhans@bx.psu.edu>
date Tue, 04 Sep 2012 12:49:53 -0400
parents e29f4d801bb0
children
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9:22fe0154fa54 10:9b92372de9f6
8 "$arg" 8 "$arg"
9 #end for 9 #end for
10 </command> 10 </command>
11 11
12 <inputs> 12 <inputs>
13 <param name="input" type="data" format="snp" label="SNP table" /> 13 <param name="input" type="data" format="gdSnp" label="SNP table" />
14 <param name="p1_input" type="data" format="ind" label="Population 1 individuals" /> 14 <param name="p1_input" type="data" format="ind" label="Population 1 individuals" />
15 <param name="p2_input" type="data" format="ind" label="Population 2 individuals" /> 15 <param name="p2_input" type="data" format="ind" label="Population 2 individuals" />
16 16
17 <param name="data_source" type="select" format="integer" label="Data source"> 17 <param name="data_source" type="select" format="integer" label="Data source">
18 <option value="0" selected="true">sequence coverage</option> 18 <option value="0" selected="true">sequence coverage</option>
38 </param> 38 </param>
39 39
40 </inputs> 40 </inputs>
41 41
42 <outputs> 42 <outputs>
43 <data name="output" format="snp" metadata_source="input" /> 43 <data name="output" format="gdSnp" metadata_source="input" />
44 </outputs> 44 </outputs>
45 45
46 <tests> 46 <tests>
47 <test> 47 <test>
48 <param name="input" value="test_in/sample.snp" ftype="snp" /> 48 <param name="input" value="test_in/sample.gdSnp" ftype="gdSnp" />
49 <param name="p1_input" value="test_in/a.ind" ftype="ind" /> 49 <param name="p1_input" value="test_in/a.ind" ftype="ind" />
50 <param name="p2_input" value="test_in/b.ind" ftype="ind" /> 50 <param name="p2_input" value="test_in/b.ind" ftype="ind" />
51 <param name="data_source" value="0" /> 51 <param name="data_source" value="0" />
52 <param name="min_reads" value="3" /> 52 <param name="min_reads" value="3" />
53 <param name="min_qual" value="0" /> 53 <param name="min_qual" value="0" />
54 <param name="retain" value="0" /> 54 <param name="retain" value="0" />
55 <param name="discard_fixed" value="1" /> 55 <param name="discard_fixed" value="1" />
56 <param name="biased" value="0" /> 56 <param name="biased" value="0" />
57 <output name="output" file="test_out/add_fst_column/add_fst_column.snp" /> 57 <output name="output" file="test_out/add_fst_column/add_fst_column.gdSnp" />
58 </test> 58 </test>
59 </tests> 59 </tests>
60 60
61 <help> 61 <help>
62 **What it does** 62 **What it does**