Mercurial > repos > miller-lab > genome_diversity

diff add_fst_column.xml @ 10:9b92372de9f6

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rename snp to gsSnp, sap to gdSap
author Richard Burhans <burhans@bx.psu.edu>
date Tue, 04 Sep 2012 12:49:53 -0400
parents e29f4d801bb0
children
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line diff
--- a/add_fst_column.xml	Tue Jul 10 11:41:22 2012 -0400
+++ b/add_fst_column.xml	Tue Sep 04 12:49:53 2012 -0400
@@ -10,7 +10,7 @@
   </command>
 
   <inputs>
-    <param name="input" type="data" format="snp" label="SNP table" />
+    <param name="input" type="data" format="gdSnp" label="SNP table" />
     <param name="p1_input" type="data" format="ind" label="Population 1 individuals" />
     <param name="p2_input" type="data" format="ind" label="Population 2 individuals" />
 
@@ -40,12 +40,12 @@
   </inputs>
 
   <outputs>
-    <data name="output" format="snp" metadata_source="input" />
+    <data name="output" format="gdSnp" metadata_source="input" />
   </outputs>
 
   <tests>
     <test>
-      <param name="input" value="test_in/sample.snp" ftype="snp" />
+      <param name="input" value="test_in/sample.gdSnp" ftype="gdSnp" />
       <param name="p1_input" value="test_in/a.ind" ftype="ind" />
       <param name="p2_input" value="test_in/b.ind" ftype="ind" />
       <param name="data_source" value="0" />
@@ -54,7 +54,7 @@
       <param name="retain" value="0" />
       <param name="discard_fixed" value="1" />
       <param name="biased" value="0" />
-      <output name="output" file="test_out/add_fst_column/add_fst_column.snp" />
+      <output name="output" file="test_out/add_fst_column/add_fst_column.gdSnp" />
     </test>
   </tests>