Mercurial > repos > miller-lab > genome_diversity

comparison coverage_distributions.xml @ 10:9b92372de9f6

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rename snp to gsSnp, sap to gdSap
author Richard Burhans <burhans@bx.psu.edu>
date Tue, 04 Sep 2012 12:49:53 -0400
parents e29f4d801bb0
children
comparison
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9:22fe0154fa54 10:9b92372de9f6
19 "$individual_arg" 19 "$individual_arg"
20 #end for 20 #end for
21 </command> 21 </command>
22 22
23 <inputs> 23 <inputs>
24 <param name="input" type="data" format="snp" label="SNP table" /> 24 <param name="input" type="data" format="gdSnp" label="SNP table" />
25 25
26 <conditional name="individuals"> 26 <conditional name="individuals">
27 <param name="choice" type="select" label="Individuals"> 27 <param name="choice" type="select" label="Individuals">
28 <option value="0" selected="true">All</option> 28 <option value="0" selected="true">All</option>
29 <option value="1">Individuals in a population</option> 29 <option value="1">Individuals in a population</option>
52 <data name="output" format="html" /> 52 <data name="output" format="html" />
53 </outputs> 53 </outputs>
54 54
55 <tests> 55 <tests>
56 <test> 56 <test>
57 <param name="input" value="test_in/sample.snp" ftype="snp" /> 57 <param name="input" value="test_in/sample.gdSnp" ftype="gdSnp" />
58 <param name="choice" value="0" /> 58 <param name="choice" value="0" />
59 <output name="output" file="test_out/coverage_distributions/coverage.html" ftype="html" compare="diff" lines_diff="2"> 59 <output name="output" file="test_out/coverage_distributions/coverage.html" ftype="html" compare="diff" lines_diff="2">
60 <extra_files type="file" name="coverage.pdf" value="test_out/coverage_distributions/coverage.pdf" compare="sim_size" delta = "1000"/> 60 <extra_files type="file" name="coverage.pdf" value="test_out/coverage_distributions/coverage.pdf" compare="sim_size" delta = "1000"/>
61 <extra_files type="file" name="coverage.txt" value="test_out/coverage_distributions/coverage.txt" /> 61 <extra_files type="file" name="coverage.txt" value="test_out/coverage_distributions/coverage.txt" />
62 </output> 62 </output>