Mercurial > repos > miller-lab > genome_diversity

diff coverage_distributions.xml @ 10:9b92372de9f6

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rename snp to gsSnp, sap to gdSap
author Richard Burhans <burhans@bx.psu.edu>
date Tue, 04 Sep 2012 12:49:53 -0400
parents e29f4d801bb0
children
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--- a/coverage_distributions.xml	Tue Jul 10 11:41:22 2012 -0400
+++ b/coverage_distributions.xml	Tue Sep 04 12:49:53 2012 -0400
@@ -21,7 +21,7 @@
   </command>
 
   <inputs>
-    <param name="input" type="data" format="snp" label="SNP table" />
+    <param name="input" type="data" format="gdSnp" label="SNP table" />
 
     <conditional name="individuals">
       <param name="choice" type="select" label="Individuals">
@@ -54,7 +54,7 @@
 
   <tests>
     <test>
-      <param name="input" value="test_in/sample.snp" ftype="snp" />
+      <param name="input" value="test_in/sample.gdSnp" ftype="gdSnp" />
       <param name="choice" value="0" />
       <output name="output" file="test_out/coverage_distributions/coverage.html" ftype="html" compare="diff" lines_diff="2">
         <extra_files type="file" name="coverage.pdf" value="test_out/coverage_distributions/coverage.pdf" compare="sim_size" delta = "1000"/>