Mercurial > repos > miller-lab > genome_diversity

comparison prepare_population_structure.xml @ 10:9b92372de9f6

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rename snp to gsSnp, sap to gdSap
author Richard Burhans <burhans@bx.psu.edu>
date Tue, 04 Sep 2012 12:49:53 -0400
parents e29f4d801bb0
children
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9:22fe0154fa54 10:9b92372de9f6
16 "$arg" 16 "$arg"
17 #end for 17 #end for
18 </command> 18 </command>
19 19
20 <inputs> 20 <inputs>
21 <param name="input" type="data" format="snp" label="SNP table" /> 21 <param name="input" type="data" format="gdSnp" label="SNP table" />
22 <param name="min_reads" type="integer" min="0" value="0" label="Minimum reads covering a SNP, per individual" /> 22 <param name="min_reads" type="integer" min="0" value="0" label="Minimum reads covering a SNP, per individual" />
23 <param name="min_qual" type="integer" min="0" value="0" label="Minimum quality value, per individual" /> 23 <param name="min_qual" type="integer" min="0" value="0" label="Minimum quality value, per individual" />
24 <param name="min_spacing" type="integer" min="0" value="0" label="Minimum spacing between SNPs on the same scaffold" /> 24 <param name="min_spacing" type="integer" min="0" value="0" label="Minimum spacing between SNPs on the same scaffold" />
25 <conditional name="individuals"> 25 <conditional name="individuals">
26 <param name="choice" type="select" label="Individuals"> 26 <param name="choice" type="select" label="Individuals">
44 </data> 44 </data>
45 </outputs> 45 </outputs>
46 46
47 <tests> 47 <tests>
48 <test> 48 <test>
49 <param name="input" value="test_in/sample.snp" ftype="snp" /> 49 <param name="input" value="test_in/sample.gdSnp" ftype="gdSnp" />
50 <param name="min_reads" value="3" /> 50 <param name="min_reads" value="3" />
51 <param name="min_qual" value="30" /> 51 <param name="min_qual" value="30" />
52 <param name="min_spacing" value="0" /> 52 <param name="min_spacing" value="0" />
53 <param name="choice" value="0" /> 53 <param name="choice" value="0" />
54 <output name="output" file="test_out/prepare_population_structure/prepare_population_structure.html" ftype="html" compare="diff" lines_diff="2"> 54 <output name="output" file="test_out/prepare_population_structure/prepare_population_structure.html" ftype="html" compare="diff" lines_diff="2">