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author miller-lab
date Wed, 12 Sep 2012 17:10:26 -0400
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
  <head>
    <meta http-equiv="Content-type" content="text/html; charset=UTF-8" />
    <link rel="stylesheet" href="/static/style/base.css" type="text/css" />
    <title>Phylogenetic tree Galaxy Composite Dataset</title>
  </head>
  <body>
    <div class="document">
      Output completed: 2012-04-03 01:57:44 PM
      <p/>
      <div id="gd_outputs">
        Outputs
        <ul>
            <li><a href="tree.pdf">tree.pdf</a></li>
            <li><a href="phylogenetic_tree.newick">phylogenetic tree (newick)</a></li>
            <li><a href="distance_matrix.phylip">Phylip distance matrix</a></li>
            <li><a href="mega_distance_matrix.txt">Mega distance matrix</a></li>
            <li><a href="informative_snps.txt">informative SNPs</a></li>
        </ul>
      </div>
      <div id="gd_inputs">
        Inputs
        <ul>
            <li>Minimum coverage: 3</li>
            <li>Minimum quality: 30</li>
            <li>Include reference sequence: yes</li>
            <li>Data source: sequence coverage</li>
            <li>Branch type: square</li>
            <li>Draw branches to scale: yes</li>
            <li>Show branch lengths: yes</li>
            <li>Tree layout: horizontal</li>
        </ul>
      </div>
      <div id="gd_misc">
        Individuals
<ol>
<li>PB1</li>
<li>PB2</li>
<li>PB3</li>
<li>PB4</li>
<li>PB6</li>
<li>PB8</li>
</ol>
      </div>
    </div>
  </body>
</html>