Mercurial > repos > miller-lab > package_eigensoft_5_0_1

changeset 0:02f04f3579b5 draft default tip

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Initial version
author miller-lab
date Mon, 09 Sep 2013 13:34:30 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 25 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Sep 09 13:34:30 2013 -0400
@@ -0,0 +1,25 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="eigensoft" version="5.0.1">
+    <install version="1.0">
+      <actions>
+        <!-- Download source code -->
+        <action type="download_by_url">http://www.bx.psu.edu/miller_lab/redist/EIG5.0.1.tar.gz</action>
+
+        <!-- Build eigensoft -->
+        <action type="change_directory">src</action>
+        <action type="shell_command">make clobber</action>
+        <action type="shell_command">make install</action>
+        <action type="change_directory">..</action>
+
+        <!-- Install eigensoft -->
+        <action type="shell_command">cp -R bin $INSTALL_DIR</action>
+
+        <!-- Set environment for dependent repositories -->
+        <action type="set_environment">
+          <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+        </action>
+      </actions>
+    </install>
+  </package>
+</tool_dependency>