Mercurial > repos > miller-lab > package_quicktree_1_1

changeset 0:dae77031fa2f draft

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Initial version
author miller-lab
date Mon, 09 Sep 2013 13:45:01 -0400
parents
children eaefaec9b8c9
files tool_dependencies.xml
diffstat 1 files changed, 22 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Sep 09 13:45:01 2013 -0400
@@ -0,0 +1,22 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="quicktree" version="1.1">
+    <install version="1.0">
+      <actions>
+        <!-- Download source code -->
+        <action type="download_by_url" target_filename="quicktree_1.1.tar.gz">ftp://ftp.sanger.ac.uk/pub4/resources/software/quicktree/quicktree.tar.gz</action>
+
+        <!-- Build quicktree -->
+        <action type="shell_command">make quicktree</action>
+
+        <!-- Install quicktree -->
+        <action type="shell_command">cp -R bin $INSTALL_DIR</action>
+
+        <!-- Set environment for dependent repositories -->
+        <action type="set_environment">
+          <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+        </action>
+      </actions>
+    </install>
+  </package>
+</tool_dependency>