Mercurial > repos > mingchen0919 > aurora_fastqc

annotate expose-outputs-to-galaxy-history.sh @ 0:0aeed70b3bc5 draft default tip

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planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
author mingchen0919
date Fri, 14 Dec 2018 00:38:44 -0500
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0aeed70b3bc5 planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
parents:
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1 # change directory to tool outputs directory
0aeed70b3bc5 planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
parents:
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2 cd ${REPORT_FILES_PATH}
0aeed70b3bc5 planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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3
0aeed70b3bc5 planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
parents:
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4 # copy outputs from tool outputs directory to corresponding galaxy output path
0aeed70b3bc5 planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
parents:
diff changeset
5 if [ -e "rmarkdown_report.html" ]; then
0aeed70b3bc5 planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
parents:
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6 cp rmarkdown_report.html ${REPORT}
0aeed70b3bc5 planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
parents:
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7 fi
0aeed70b3bc5 planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
parents:
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8
0aeed70b3bc5 planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
parents:
diff changeset
9 if [ -e "index.html" ]; then
0aeed70b3bc5 planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
parents:
diff changeset
10 cp index.html ${REPORT}
0aeed70b3bc5 planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
parents:
diff changeset
11 fi