--- a/10_adapter_content.Rmd	Tue Feb 27 10:40:20 2018 -0500
+++ b/10_adapter_content.Rmd	Sun Dec 30 12:48:14 2018 -0500
@@ -3,14 +3,11 @@
 ---
 
 ```{r setup, include=FALSE, warning=FALSE, message=FALSE}
-knitr::opts_chunk$set(
-  echo = as.logical(opt$X_e),
-  error = TRUE,
-  eval = TRUE
-)
+knitr::opts_knit$set(progress = FALSE)
+knitr::opts_chunk$set(error = TRUE, echo = FALSE)
 ```
 
-# Adapter Content
+### Adapter Content
 
 ```{r 'Adapter Content', fig.width=10}
 ## reads 1
@@ -36,6 +33,10 @@
   xlim(min(comb_ac$id), max(comb_ac$id)) + 
   ylim(0, 1) +
   xlab('Position in read (bp)') +
-  ylab('')
+  ylab('') +
+  scale_color_discrete(name = '') +
+  theme(axis.text.x = element_text(size = 5),
+        panel.background = element_rect(fill = NA),
+        axis.line = element_line())
 ggplotly(p)
-```
\ No newline at end of file
+```