Mercurial > repos > mingchen0919 > aurora_htseq_site

annotate index.Rmd @ 0:dcf65671e56a draft

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planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
author mingchen0919
date Sun, 30 Dec 2018 12:52:51 -0500
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3 ```{css, echo=FALSE}
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4 pre code, pre, code {
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5 white-space: pre !important;
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6 overflow-x: scroll !important;
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7 word-break: keep-all !important;
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8 word-wrap: initial !important;
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9 }
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10 ```
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12 ```{r, echo=FALSE}
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13 # to make the css theme to work, <link></link> tags cannot be added directly
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14 # as <script></script> tags as below.
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15 # it has to be added using a code chunk with the htmltool functions!!!
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16 css_link = tags$link()
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17 css_link$attribs = list(rel="stylesheet", href="vakata-jstree-3.3.5/dist/themes/default/style.min.css")
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18 css_link
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19 ```
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21 ```{r, eval=FALSE, echo=FALSE}
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22 # this code chunk is purely for adding comments
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23 # below is to add jQuery and jstree javascripts
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24 ```
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26 <script src="vakata-jstree-3.3.5/dist/jstree.min.js"></script>
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29 ```{r, eval=FALSE, echo=FALSE}
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30 # this code chunk is purely for adding comments
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31 # javascript code below is to build the file tree interface
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32 # see this for how to implement opening hyperlink: https://stackoverflow.com/questions/18611317/how-to-get-i-get-leaf-nodes-in-jstree-to-open-their-hyperlink-when-clicked-when
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33 ```
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34 <script>
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35 jQuery(function () {
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36 // create an instance when the DOM is ready
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37 jQuery('#jstree').jstree().bind("select_node.jstree", function (e, data) {
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38 window.open( data.node.a_attr.href, data.node.a_attr.target )
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39 });
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40 });
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41 </script>
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42
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43 ## Outputs
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45 ```{r, echo=FALSE}
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46 # create a div container to store the file tree interface
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47 library(htmltools)
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48 tags$div(
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49 id="jstree",
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50 file_tree(Sys.getenv('REPORT_FILES_PATH'))
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51 )
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52 ```