Mercurial > repos > mingchen0919 > aurora_star
comparison expose-outputs-to-galaxy-history.sh @ 0:25602263cff0 draft default tip
planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
| author | mingchen0919 |
|---|---|
| date | Sun, 30 Dec 2018 13:11:48 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:25602263cff0 |
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| 1 # change directory to tool outputs directory | |
| 2 cd ${REPORT_FILES_PATH} | |
| 3 | |
| 4 # copy outputs from tool outputs directory to corresponding galaxy output path | |
| 5 if [ -e "rmarkdown_report.html" ]; then | |
| 6 cp rmarkdown_report.html ${REPORT} | |
| 7 fi | |
| 8 | |
| 9 if [ -e "index.html" ]; then | |
| 10 cp index.html ${REPORT} | |
| 11 fi | |
| 12 | |
| 13 cp Aligned.out.sorted.bam ${X_S} |