Mercurial > repos > mingchen0919 > aurora_star

diff expose-outputs-to-galaxy-history.sh @ 0:25602263cff0 draft default tip

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planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
author mingchen0919
date Sun, 30 Dec 2018 13:11:48 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/expose-outputs-to-galaxy-history.sh	Sun Dec 30 13:11:48 2018 -0500
@@ -0,0 +1,13 @@
+# change directory to tool outputs directory
+cd ${REPORT_FILES_PATH}
+
+# copy outputs from tool outputs directory to corresponding galaxy output path
+if [ -e "rmarkdown_report.html" ]; then
+  cp rmarkdown_report.html ${REPORT}
+fi
+
+if [ -e "index.html" ]; then
+  cp index.html ${REPORT}
+fi
+
+cp Aligned.out.sorted.bam ${X_S}
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