Mercurial > repos > mingchen0919 > aurora_star_site

diff expose-outputs-to-galaxy-history.sh @ 0:c12e291895ff draft

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planemo upload commit 104ae24ee30761a0099eeb91362ed1e3e13aba4b
author mingchen0919
date Tue, 01 May 2018 10:45:22 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/expose-outputs-to-galaxy-history.sh	Tue May 01 10:45:22 2018 -0400
@@ -0,0 +1,13 @@
+# change directory to tool outputs directory
+cd ${REPORT_FILES_PATH}
+
+# copy outputs from tool outputs directory to corresponding galaxy output path
+if [ -e "rmarkdown_report.html" ]; then
+  cp rmarkdown_report.html ${REPORT}
+fi
+
+if [ -e "index.html" ]; then
+  cp index.html ${REPORT}
+fi
+
+cp Aligned.out.sorted.bam ${X_S}
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