Mercurial > repos > mingchen0919 > rmarkdown_collection_builder
comparison collection_paired.Rmd @ 6:a0c8b2b25774 draft
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit 88ca36a41aa577ba888cee39cf81b176bf7e68db
| author | mingchen0919 |
|---|---|
| date | Tue, 26 Sep 2017 13:33:22 -0400 |
| parents | |
| children | abf9cbd7578f |
comparison
equal
deleted
inserted
replaced
| 5:66022ba24ac7 | 6:a0c8b2b25774 |
|---|---|
| 1 --- | |
| 2 title: 'Build collection: a paired datasets' | |
| 3 output: | |
| 4 html_document: | |
| 5 number_sections: true | |
| 6 toc: true | |
| 7 theme: cosmo | |
| 8 highlight: tango | |
| 9 --- | |
| 10 | |
| 11 ```{r setup, include=FALSE, warning=FALSE, message=FALSE} | |
| 12 knitr::opts_chunk$set( | |
| 13 echo = ECHO | |
| 14 ) | |
| 15 ``` | |
| 16 | |
| 17 # Command line arguments | |
| 18 | |
| 19 ```{r 'command line arguments'} | |
| 20 str(opt) | |
| 21 ``` | |
| 22 | |
| 23 # Rename files | |
| 24 | |
| 25 ```{r} | |
| 26 file.copy("FORWARD_INPUT", './OUTPUT_DIR/forward.FORMAT') | |
| 27 file.copy("REVERSE_INPUT", './OUTPUT_DIR/reverse.FORMAT') | |
| 28 ``` | |
| 29 |