Mercurial > repos > mingchen0919 > rmarkdown_deseq2

comparison DESeq_visualization.Rmd @ 2:a0d37b034e45 draft

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planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_deseq2 commit 9285c2b8ad41a486dde2a87600a6b8267841c8b5-dirty
author mingchen0919
date Tue, 08 Aug 2017 10:56:49 -0400
parents 7231d7e8d3ed
children
comparison
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1:312e9bcc02f1 2:a0d37b034e45
104 geom_point(size = 3) + coord_fixed() 104 geom_point(size = 3) + coord_fixed()
105 ``` 105 ```
106 106
107 ### Using the *Poisson Distance* 107 ### Using the *Poisson Distance*
108 108
109 ```{r} 109 ```{r eval=FALSE}
110 mdsPois <- as.data.frame(colData(dds)) %>% 110 mdsPois <- as.data.frame(colData(dds)) %>%
111 cbind(cmdscale(samplePoisDistMatrix)) 111 cbind(cmdscale(samplePoisDistMatrix))
112 ggplot(mdsPois, aes(x = `1`, y = `2`, col = time)) + 112 ggplot(mdsPois, aes(x = `1`, y = `2`, col = time)) +
113 geom_point(size = 3) + coord_fixed() 113 geom_point(size = 3) + coord_fixed()
114 ``` 114 ```